RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 PCDHA5Q9Y5H7 936 aa1.57□□□□□ -2.16
VPS35-212ENST00000640313 NRDCO43847 1150 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 FZD7O75084 574 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 GADD45BO75293 160 aaPredicted RBP1.56□□□□□ -2.16
VPS35-212ENST00000640313 EFEMP2O95967 443 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 PNLIPP16233 465 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 ETV3P41162 512 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 GALK1P51570 392 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 FCGRTP55899 365 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 ERVFRD-1P60508 538 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 PURAQ00577 322 aaKnown RBP1.56□□□□□ -2.16
VPS35-212ENST00000640313 TEKQ02763 1124 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 NT5DC1Q5TFE4 455 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 USP51Q70EK9 711 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 CDH24Q86UP0 819 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 ZNF575Q86XF7 245 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 GRIN3AQ8TCU5 1115 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 ELMO3Q96BJ8 720 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 G6PC3Q9BUM1 346 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 CBX8Q9HC52 389 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 USP40Q9NVE5 1235 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 PCDHA4Q9UN74 947 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 SAMM50Q9Y512 469 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 PCDHA11Q9Y5I1 949 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 SNCAIPQ9Y6H5 919 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 IRS2Q9Y4H2 1338 aa1.56□□□□□ -2.16
VPS35-212ENST00000640313 SH3D21A4FU49 640 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 RBAK-RBAKDNI3L0D1 243 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 NOBOXO60393 691 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 BUB1BO60566 1050 aaPredicted RBP1.55□□□□□ -2.16
VPS35-212ENST00000640313 MPOP05164 745 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 FBLN1P23142 703 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 IGFBP6P24592 240 aaPredicted RBP1.55□□□□□ -2.16
VPS35-212ENST00000640313 LTKP29376 864 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 KIR2DL1P43626 348 aaPredicted RBP1.55□□□□□ -2.16
VPS35-212ENST00000640313 KIR2DL2P43627 348 aaPredicted RBP1.55□□□□□ -2.16
VPS35-212ENST00000640313 ORC1Q13415 861 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 INPP5AQ14642 412 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 CBX2Q14781 532 aaPredicted RBP1.55□□□□□ -2.16
VPS35-212ENST00000640313 LRRC14Q15048 493 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 VWA3BQ502W6 1294 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 PRAMEF13Q5VWM6 474 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 LRFN4Q6PJG9 635 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 LIPIQ6XZB0 460 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 HDXQ7Z353 690 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 SIRT2Q8IXJ6 389 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 DNAJB8Q8NHS0 232 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 DVL3Q92997 716 aaPredicted RBP1.55□□□□□ -2.16
VPS35-212ENST00000640313 C8orf49Q96NF6 230 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 LNPKQ9C0E8 428 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 KLHL14Q9P2G3 628 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 CYP8B1Q9UNU6 501 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 CEP131Q9UPN4 1083 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 TACC3Q9Y6A5 838 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 DUSP10Q9Y6W6 482 aa1.55□□□□□ -2.16
VPS35-212ENST00000640313 RBM47A0AV96 593 aaKnown RBP1.54□□□□□ -2.16
VPS35-212ENST00000640313 PRAMEF27A3QJZ7 478 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 EIF1AYO14602 144 aaKnown RBP1.54□□□□□ -2.16
VPS35-212ENST00000640313 SSFA2P28290 1259 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 CNR2P34972 360 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 ETF1P62495 437 aaKnown RBP1.54□□□□□ -2.16
VPS35-212ENST00000640313 TMEM62Q0P6H9 643 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 PDE3BQ13370 1112 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 SMN1Q16637 294 aaKnown RBP1.54□□□□□ -2.16
VPS35-212ENST00000640313 SLC6A19Q695T7 634 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.54□□□□□ -2.16
VPS35-212ENST00000640313 LLGL2Q6P1M3 1020 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 SPRED1Q7Z699 444 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 SAPCD2Q86UD0 394 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 MRPL41Q8IXM3 137 aaKnown RBP1.54□□□□□ -2.16
VPS35-212ENST00000640313 DTWD2Q8NBA8 298 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 EPS8L3Q8TE67 593 aaKnown RBP1.54□□□□□ -2.16
VPS35-212ENST00000640313 ANKRD24Q8TF21 1146 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 LOXL4Q96JB6 756 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 CITED4Q96RK1 184 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 FAM129BQ96TA1 746 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 ZNF747Q9BV97 191 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 CEP44Q9C0F1 390 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 KCNH3Q9ULD8 1083 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 AKAP2Q9Y2D5 859 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 TSC22D4Q9Y3Q8 395 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 TNFRSF18Q9Y5U5 241 aa1.54□□□□□ -2.16
VPS35-212ENST00000640313 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP1.53□□□□□ -2.16
VPS35-212ENST00000640313 ENC1O14682 589 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 PAGE1O75459 146 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 PLATP00750 562 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 PFKLP17858 780 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 SDHBP21912 280 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 GRK4P32298 578 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 HTRA3P83110 453 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 LAPTM5Q13571 262 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 CDSNQ15517 529 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 SLC14A2Q15849 920 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 RASIP1Q5U651 963 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 RNF111Q6ZNA4 994 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 TMC6Q7Z403 805 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 C3orf58Q8NDZ4 430 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 SH3RF3Q8TEJ3 882 aaPredicted RBP1.53□□□□□ -2.16
VPS35-212ENST00000640313 FNIP1Q8TF40 1166 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 XAGE3Q8WTP9 111 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms