RNA–Protein interactions for RNA: ENST00000561268.5

SPG11-224, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 4

Gene SPG11, Length 530 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-224ENST00000561268 C16orf86Q6ZW13 317 aa8.29□□□□□ -1.08
SPG11-224ENST00000561268 ANKRD13CQ8N6S4 541 aa8.29□□□□□ -1.08
SPG11-224ENST00000561268 EXOC6Q8TAG9 804 aa8.29□□□□□ -1.08
SPG11-224ENST00000561268 USP6NLQ92738 828 aa8.29□□□□□ -1.08
SPG11-224ENST00000561268 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.29□□□□□ -1.086e-6■■■□□ 19.2
SPG11-224ENST00000561268 TXNRD2Q9NNW7 524 aa8.29□□□□□ -1.08
SPG11-224ENST00000561268 ECHDC1Q9NTX5 307 aa8.29□□□□□ -1.08
SPG11-224ENST00000561268 SWAP70Q9UH65 585 aa8.29□□□□□ -1.08
SPG11-224ENST00000561268 PCDHB8Q9UN66 801 aa8.29□□□□□ -1.08
SPG11-224ENST00000561268 TRIOBPQ9H2D6 2365 aa8.29□□□□□ -1.08
SPG11-224ENST00000561268 APBB1O00213 710 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 TNPO2O14787 897 aaKnown RBP8.28□□□□□ -1.08
SPG11-224ENST00000561268 SMARCA5O60264 1052 aaPredicted RBP8.28□□□□□ -1.08
SPG11-224ENST00000561268 CNMDO75829 334 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 FMNL1O95466 1100 aaPredicted RBP8.28□□□□□ -1.08
SPG11-224ENST00000561268 USP14P54578 494 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 ERVK-9P63128 1117 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 ERVK-24P63145 666 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 IRX3P78415 501 aaPredicted RBP8.28□□□□□ -1.08
SPG11-224ENST00000561268 ABCB5Q2M3G0 1257 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 SLC4A8Q2Y0W8 1093 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 SLFNL1Q499Z3 407 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 CERKLQ49MI3 558 aaPredicted RBP8.28□□□□□ -1.08
SPG11-224ENST00000561268 MAP3K21Q5TCX8 1036 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 GIMAP6Q6P9H5 292 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 USP17L2Q6R6M4 530 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 TMEM179Q6ZVK1 233 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 SLC44A5Q8NCS7 719 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 RAET1EQ8TD07 263 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 SOCS4Q8WXH5 440 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 APPBP2Q92624 585 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 TRIM34Q9BYJ4 488 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 CRISPLD2Q9H0B8 497 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 PUS7LQ9H0K6 701 aaKnown RBP8.28□□□□□ -1.08
SPG11-224ENST00000561268 ARMT1Q9H993 441 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 EPB41L4AQ9HCS5 686 aaPredicted RBP8.28□□□□□ -1.08
SPG11-224ENST00000561268 MCM9Q9NXL9 1143 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 TMOD4Q9NZQ9 345 aa8.28□□□□□ -1.08
SPG11-224ENST00000561268 ARPP21Q9UBL0 812 aaPredicted RBP8.28□□□□□ -1.08
SPG11-224ENST00000561268 A0A1W2PRG0 241 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 SPDYE16A6NNV3 312 aaPredicted RBP8.27□□□□□ -1.09
SPG11-224ENST00000561268 SMIM22K7EJ46 135 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 PRKAB2O43741 272 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 ADCY3O60266 1144 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 HMGCRP04035 888 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 INHAP05111 366 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 CYP2D6P10635 497 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 XRCC5P13010 732 aaKnown RBP8.27□□□□□ -1.09
SPG11-224ENST00000561268 CCL5P13501 91 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 UBXN2AP68543 259 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 HDAC1Q13547 482 aaPredicted RBP8.27□□□□□ -1.09
SPG11-224ENST00000561268 SEPT2Q15019 361 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 SBK1Q52WX2 424 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 MORN1Q5T089 497 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 ZSCAN25Q6NSZ9 544 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 CATSPERGQ6ZRH7 1159 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 NKX2-3Q8TAU0 364 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 ACER1Q8TDN7 264 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 COA7Q96BR5 231 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 CCDC17Q96LX7 622 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 P2RX7Q99572 595 aaKnown RBP8.27□□□□□ -1.09
SPG11-224ENST00000561268 RBPJLQ9UBG7 517 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 RABGAP1Q9Y3P9 1069 aa8.27□□□□□ -1.09
SPG11-224ENST00000561268 GSG1L2A8MUP6 293 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 USP17L15C9J2P7 530 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 USP17L13C9JLJ4 530 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 USP17L11C9JVI0 530 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 USP17L18D6R9N7 530 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 USP17L22D6RA61 530 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 USP17L17D6RBQ6 530 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 USP17L19D6RCP7 530 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 USP17L20D6RJB6 530 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 FOXP2O15409 715 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 ZFYP08048 801 aaPredicted RBP8.26□□□□□ -1.09
SPG11-224ENST00000561268 HOXC6P09630 235 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 ELNP15502 786 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 MAPK4P31152 587 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 USP17L24Q0WX57 530 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 SIAH1Q8IUQ4 282 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 U2AF1L4Q8WU68 220 aaKnown RBP8.26□□□□□ -1.09
SPG11-224ENST00000561268 TRIB2Q92519 343 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 LPAR1Q92633 364 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 OSBP2Q969R2 916 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 GPATCH3Q96I76 525 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 STRBPQ96SI9 672 aaKnown RBP8.26□□□□□ -1.09
SPG11-224ENST00000561268 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.26□□□□□ -1.09
SPG11-224ENST00000561268 UNC93B1Q9H1C4 597 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 PORCNQ9H237 461 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 TMX2Q9Y320 296 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 KIAA1217Q5T5P2 1943 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 ZMYM6O95789 1325 aa8.26□□□□□ -1.09
SPG11-224ENST00000561268 IGKV6D-41A0A0C4DH26 115 aa8.25□□□□□ -1.09
SPG11-224ENST00000561268 USP17L12C9JPN9 530 aa8.25□□□□□ -1.09
SPG11-224ENST00000561268 USP17L21D6R901 530 aa8.25□□□□□ -1.09
SPG11-224ENST00000561268 GPAA1O43292 621 aa8.25□□□□□ -1.09
SPG11-224ENST00000561268 GLRX3O76003 335 aaKnown RBP8.25□□□□□ -1.09
SPG11-224ENST00000561268 POLR3DP05423 398 aaPredicted RBP8.25□□□□□ -1.09
SPG11-224ENST00000561268 AKR1B1P15121 316 aa8.25□□□□□ -1.09
SPG11-224ENST00000561268 MX1P20591 662 aa8.25□□□□□ -1.09
SPG11-224ENST00000561268 CDK8P49336 464 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms