RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 TTLL1O95922 423 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 MCM4P33991 863 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 RESTQ13127 1097 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 SEPT2Q15019 361 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 PKN1Q16512 942 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 ABCB5Q2M3G0 1257 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 PPP4R3BQ5MIZ7 849 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 ANGEL2Q5VTE6 544 aaKnown RBP13.14□□□□□ -0.31
SNX1-212ENST00000560861 RASGRP2Q7LDG7 609 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 APOBEC3FQ8IUX4 373 aaKnown RBP13.14□□□□□ -0.31
SNX1-212ENST00000560861 SRBD1Q8N5C6 995 aaKnown RBP13.14□□□□□ -0.31
SNX1-212ENST00000560861 FAM184AQ8NB25 1140 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 CTCFLQ8NI51 663 aaPredicted RBP13.14□□□□□ -0.31
SNX1-212ENST00000560861 AIFM3Q96NN9 605 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 DEFB129Q9H1M3 183 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 ADARB2Q9NS39 739 aaKnown RBP13.14□□□□□ -0.31
SNX1-212ENST00000560861 KIF3AQ9Y496 699 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 PRPF3O43395 683 aaKnown RBP13.13□□□□□ -0.31
SNX1-212ENST00000560861 GDF11O95390 407 aa13.13□□□□□ -0.31
SNX1-212ENST00000560861 SSRP1Q08945 709 aaKnown RBP13.13□□□□□ -0.31
SNX1-212ENST00000560861 CMTR1Q8N1G2 835 aaKnown RBP13.13□□□□□ -0.31
SNX1-212ENST00000560861 STAG2Q8N3U4 1231 aa13.13□□□□□ -0.31
SNX1-212ENST00000560861 FBXO18Q8NFZ0 1043 aa13.13□□□□□ -0.31
SNX1-212ENST00000560861 SHISA4Q96DD7 197 aa13.13□□□□□ -0.31
SNX1-212ENST00000560861 CHAMP1Q96JM3 812 aa13.13□□□□□ -0.31
SNX1-212ENST00000560861 TRIM34Q9BYJ4 488 aa13.13□□□□□ -0.31
SNX1-212ENST00000560861 KANSL2Q9H9L4 492 aa13.13□□□□□ -0.31
SNX1-212ENST00000560861 GGA3Q9NZ52 723 aa13.13□□□□□ -0.31
SNX1-212ENST00000560861 SYNPO2Q9UMS6 1093 aa13.13□□□□□ -0.31
SNX1-212ENST00000560861 SCAF8Q9UPN6 1271 aaKnown RBP13.13□□□□□ -0.31
SNX1-212ENST00000560861 VPS37CA5D8V6 355 aaPredicted RBP13.12□□□□□ -0.31
SNX1-212ENST00000560861 GH2P01242 217 aa13.12□□□□□ -0.31
SNX1-212ENST00000560861 PDHBP11177 359 aa13.12□□□□□ -0.31
SNX1-212ENST00000560861 EEF2P13639 858 aaKnown RBP13.12□□□□□ -0.31
SNX1-212ENST00000560861 SMARCA1P28370 1054 aa13.12□□□□□ -0.31
SNX1-212ENST00000560861 KIF5BP33176 963 aa13.12□□□□□ -0.31
SNX1-212ENST00000560861 NBPF12Q5TAG4 269 aaPredicted RBP13.12□□□□□ -0.31
SNX1-212ENST00000560861 FOXD4L5Q5VV16 416 aaPredicted RBP13.12□□□□□ -0.31
SNX1-212ENST00000560861 LRRC47Q8N1G4 583 aaKnown RBP13.12□□□□□ -0.31
SNX1-212ENST00000560861 FOXD4L4Q8WXT5 416 aaPredicted RBP13.12□□□□□ -0.31
SNX1-212ENST00000560861 ALG1Q9BT22 464 aa13.12□□□□□ -0.31
SNX1-212ENST00000560861 SLC26A6Q9BXS9 759 aa13.12□□□□□ -0.31
SNX1-212ENST00000560861 GJB4Q9NTQ9 266 aa13.12□□□□□ -0.31
SNX1-212ENST00000560861 CLIP2Q9UDT6 1046 aa13.12□□□□□ -0.31
SNX1-212ENST00000560861 ZBTB21Q9ULJ3 1066 aa13.12□□□□□ -0.31
SNX1-212ENST00000560861 PPP2R3BQ9Y5P8 575 aa13.12□□□□□ -0.31
SNX1-212ENST00000560861 PHIPQ8WWQ0 1821 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 GLTPD2A6NH11 291 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 USP17L5A8MUK1 530 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 POTECB2RU33 542 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 MPHOSPH10O00566 681 aaKnown RBP13.11□□□□□ -0.31
SNX1-212ENST00000560861 CYTH3O43739 400 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 DEXIO95424 95 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 LMOD1P29536 600 aaPredicted RBP13.11□□□□□ -0.31
SNX1-212ENST00000560861 CAP2P40123 477 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 GNAQP50148 359 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 C1QTNF8P60827 252 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 OTUD7BQ6GQQ9 843 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 MIGA2Q7L4E1 593 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 C8orf76Q96K31 380 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 GBP4Q96PP9 640 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 LZTS2Q9BRK4 669 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 SPZ1Q9BXG8 430 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 ZNF112Q9UJU3 913 aa13.11□□□□□ -0.31
SNX1-212ENST00000560861 A0A1W2PRG0 241 aa13.1□□□□□ -0.31
SNX1-212ENST00000560861 ICA1Q05084 483 aa13.1□□□□□ -0.31
SNX1-212ENST00000560861 ZNF543Q08ER8 600 aa13.1□□□□□ -0.31
SNX1-212ENST00000560861 KRT40Q6A162 431 aa13.1□□□□□ -0.31
SNX1-212ENST00000560861 DPY19L2Q6NUT2 758 aa13.1□□□□□ -0.31
SNX1-212ENST00000560861 USP17L2Q6R6M4 530 aa13.1□□□□□ -0.31
SNX1-212ENST00000560861 TRIM22Q8IYM9 498 aa13.1□□□□□ -0.31
SNX1-212ENST00000560861 GMCL1P1Q8NEA9 526 aa13.1□□□□□ -0.31
SNX1-212ENST00000560861 WASF1Q92558 559 aa13.1□□□□□ -0.31
SNX1-212ENST00000560861 GINM1Q9NU53 330 aa13.1□□□□□ -0.31
SNX1-212ENST00000560861 OTOFQ9HC10 1997 aa13.1□□□□□ -0.31
SNX1-212ENST00000560861 KLRF2D3W0D1 207 aa13.09□□□□□ -0.31
SNX1-212ENST00000560861 PARP1P09874 1014 aaKnown RBP13.09□□□□□ -0.31
SNX1-212ENST00000560861 FOSBP53539 338 aa13.09□□□□□ -0.31
SNX1-212ENST00000560861 GUCY1B3Q02153 619 aa13.09□□□□□ -0.31
SNX1-212ENST00000560861 KIF23Q02241 960 aaPredicted RBP13.09□□□□□ -0.31
SNX1-212ENST00000560861 ASPRV1Q53RT3 343 aa13.09□□□□□ -0.31
SNX1-212ENST00000560861 USP50Q70EL3 339 aaPredicted RBP13.09□□□□□ -0.31
SNX1-212ENST00000560861 FERMT3Q86UX7 667 aa13.09□□□□□ -0.31
SNX1-212ENST00000560861 CCDC82Q8N4S0 544 aa13.09□□□□□ -0.31
SNX1-212ENST00000560861 RIOX1Q9H6W3 641 aa13.09□□□□□ -0.31
SNX1-212ENST00000560861 CABP5Q9NP86 173 aa13.09□□□□□ -0.31
SNX1-212ENST00000560861 TMX2Q9Y320 296 aa13.09□□□□□ -0.31
SNX1-212ENST00000560861 V9GY48 417 aaPredicted RBP13.09□□□□□ -0.31
SNX1-212ENST00000560861 KIF28PB7ZC32 967 aa13.08□□□□□ -0.32
SNX1-212ENST00000560861 H3BQV1 296 aa13.08□□□□□ -0.32
SNX1-212ENST00000560861 GOLGA8HP0CJ92 632 aa13.08□□□□□ -0.32
SNX1-212ENST00000560861 VEGFAP15692 232 aaPredicted RBP13.08□□□□□ -0.32
SNX1-212ENST00000560861 EPHX2P34913 555 aa13.08□□□□□ -0.32
SNX1-212ENST00000560861 NPY5RQ15761 445 aa13.08□□□□□ -0.32
SNX1-212ENST00000560861 PFKFB3Q16875 520 aaPredicted RBP13.08□□□□□ -0.32
SNX1-212ENST00000560861 IFFO2Q5TF58 517 aa13.08□□□□□ -0.32
SNX1-212ENST00000560861 TMEM87AQ8NBN3 555 aa13.08□□□□□ -0.32
SNX1-212ENST00000560861 ACER1Q8TDN7 264 aa13.08□□□□□ -0.32
SNX1-212ENST00000560861 ZC3H15Q8WU90 426 aaKnown RBP13.08□□□□□ -0.32
SNX1-212ENST00000560861 DCAF4Q8WV16 495 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms