RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 IRX3P78415 501 aaPredicted RBP15.36■□□□□ 0.05
NEDD8-208ENST00000560427 USP17L24Q0WX57 530 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 ZYXQ15942 572 aaKnown RBP15.36■□□□□ 0.05
NEDD8-208ENST00000560427 CCDC178Q5BJE1 867 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 FAM47AQ5JRC9 791 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 CLEC10AQ8IUN9 316 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 RBM8AQ9Y5S9 174 aaKnown RBP15.36■□□□□ 0.05
NEDD8-208ENST00000560427 TACC3Q9Y6A5 838 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 NEDD4P46934 1319 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 EPB41L2O43491 1005 aaKnown RBP15.35■□□□□ 0.05
NEDD8-208ENST00000560427 CYP2C8P10632 490 aa15.35■□□□□ 0.05
NEDD8-208ENST00000560427 ATP2B2Q01814 1243 aa15.35■□□□□ 0.05
NEDD8-208ENST00000560427 TRDNQ13061 729 aa15.35■□□□□ 0.05
NEDD8-208ENST00000560427 DGKZQ13574 1117 aa15.35■□□□□ 0.05
NEDD8-208ENST00000560427 RRP12Q5JTH9 1297 aaKnown RBP15.35■□□□□ 0.05
NEDD8-208ENST00000560427 C17orf99Q6UX52 265 aa15.35■□□□□ 0.05
NEDD8-208ENST00000560427 GMCL1P1Q8NEA9 526 aa15.35■□□□□ 0.05
NEDD8-208ENST00000560427 ZNF296Q8WUU4 475 aaPredicted RBP15.35■□□□□ 0.05
NEDD8-208ENST00000560427 ERO1AQ96HE7 468 aa15.35■□□□□ 0.05
NEDD8-208ENST00000560427 TTC14Q96N46 770 aa15.35■□□□□ 0.05
NEDD8-208ENST00000560427 ASCC2Q9H1I8 757 aaPredicted RBP15.35■□□□□ 0.05
NEDD8-208ENST00000560427 MYPNQ86TC9 1320 aa15.35■□□□□ 0.05
NEDD8-208ENST00000560427 EIF5BO60841 1220 aaKnown RBP15.34■□□□□ 0.05
NEDD8-208ENST00000560427 REC8O95072 547 aa15.34■□□□□ 0.05
NEDD8-208ENST00000560427 SP3Q02447 781 aa15.34■□□□□ 0.05
NEDD8-208ENST00000560427 ARHGEF6Q15052 776 aa15.34■□□□□ 0.05
NEDD8-208ENST00000560427 RNF20Q5VTR2 975 aa15.34■□□□□ 0.05
NEDD8-208ENST00000560427 CATSPERGQ6ZRH7 1159 aa15.34■□□□□ 0.05
NEDD8-208ENST00000560427 IQCA1Q86XH1 822 aa15.34■□□□□ 0.05
NEDD8-208ENST00000560427 R3HDMLQ9H3Y0 253 aa15.34■□□□□ 0.05
NEDD8-208ENST00000560427 RPAP3Q9H6T3 665 aaPredicted RBP15.34■□□□□ 0.05
NEDD8-208ENST00000560427 INCENPQ9NQS7 918 aa15.34■□□□□ 0.05
NEDD8-208ENST00000560427 CLIP2Q9UDT6 1046 aa15.34■□□□□ 0.05
NEDD8-208ENST00000560427 STX8Q9UNK0 236 aa15.34■□□□□ 0.05
NEDD8-208ENST00000560427 BCRP11274 1271 aa15.33■□□□□ 0.04
NEDD8-208ENST00000560427 NECTIN1Q15223 517 aa15.33■□□□□ 0.04
NEDD8-208ENST00000560427 FAM110CQ1W6H9 321 aa15.33■□□□□ 0.04
NEDD8-208ENST00000560427 LBX2Q6XYB7 198 aa15.33■□□□□ 0.04
NEDD8-208ENST00000560427 DGKHQ86XP1 1220 aa15.33■□□□□ 0.04
NEDD8-208ENST00000560427 IL17RBQ9NRM6 502 aa15.33■□□□□ 0.04
NEDD8-208ENST00000560427 F5H6K3 240 aa15.32■□□□□ 0.04
NEDD8-208ENST00000560427 KDM4AO75164 1064 aa15.32■□□□□ 0.04
NEDD8-208ENST00000560427 TOP1P11387 765 aaKnown RBP15.32■□□□□ 0.04
NEDD8-208ENST00000560427 HERVK_113P62684 666 aa15.32■□□□□ 0.04
NEDD8-208ENST00000560427 KLRC3Q07444 240 aa15.32■□□□□ 0.04
NEDD8-208ENST00000560427 KIF22Q14807 665 aa15.32■□□□□ 0.04
NEDD8-208ENST00000560427 RALYLQ86SE5 291 aaKnown RBP15.32■□□□□ 0.04
NEDD8-208ENST00000560427 LRRC47Q8N1G4 583 aaKnown RBP15.32■□□□□ 0.04
NEDD8-208ENST00000560427 NCOA7Q8NI08 942 aa15.32■□□□□ 0.04
NEDD8-208ENST00000560427 TANGO6Q9C0B7 1094 aa15.32■□□□□ 0.04
NEDD8-208ENST00000560427 MORF4L1Q9UBU8 362 aa15.32■□□□□ 0.04
NEDD8-208ENST00000560427 CPA4Q9UI42 421 aa15.32■□□□□ 0.04
NEDD8-208ENST00000560427 B4E1Z4 1266 aa15.31■□□□□ 0.04
NEDD8-208ENST00000560427 E7EWF7 191 aa15.31■□□□□ 0.04
NEDD8-208ENST00000560427 NDUFB10O96000 172 aa15.31■□□□□ 0.04
NEDD8-208ENST00000560427 GNRH1P01148 92 aa15.31■□□□□ 0.04
NEDD8-208ENST00000560427 LACTBP83111 547 aaPredicted RBP15.31■□□□□ 0.04
NEDD8-208ENST00000560427 COG2Q14746 738 aa15.31■□□□□ 0.04
NEDD8-208ENST00000560427 CREB3L3Q68CJ9 461 aa15.31■□□□□ 0.04
NEDD8-208ENST00000560427 SPICE1Q8N0Z3 855 aa15.31■□□□□ 0.04
NEDD8-208ENST00000560427 MB21D1Q8N884 522 aa15.31■□□□□ 0.04
NEDD8-208ENST00000560427 ANKS1AQ92625 1134 aa15.31■□□□□ 0.04
NEDD8-208ENST00000560427 GMCL1Q96IK5 515 aa15.31■□□□□ 0.04
NEDD8-208ENST00000560427 P2RX7Q99572 595 aaKnown RBP15.31■□□□□ 0.04
NEDD8-208ENST00000560427 UBAC1Q9BSL1 405 aa15.31■□□□□ 0.04
NEDD8-208ENST00000560427 HOXC10Q9NYD6 342 aa15.31■□□□□ 0.04
NEDD8-208ENST00000560427 SPDYE16A6NNV3 312 aaPredicted RBP15.3■□□□□ 0.04
NEDD8-208ENST00000560427 SLC27A2O14975 620 aa15.3■□□□□ 0.04
NEDD8-208ENST00000560427 NMT2O60551 498 aa15.3■□□□□ 0.04
NEDD8-208ENST00000560427 ZKSCAN1P17029 563 aaPredicted RBP15.3■□□□□ 0.04
NEDD8-208ENST00000560427 KIAA1755Q5JYT7 1200 aa15.3■□□□□ 0.04
NEDD8-208ENST00000560427 SLFN13Q68D06 897 aa15.3■□□□□ 0.04
NEDD8-208ENST00000560427 CTU1Q7Z7A3 348 aaKnown RBP15.3■□□□□ 0.04
NEDD8-208ENST00000560427 ZSCAN10Q96SZ4 725 aaPredicted RBP15.3■□□□□ 0.04
NEDD8-208ENST00000560427 MTA3Q9BTC8 594 aa15.3■□□□□ 0.04
NEDD8-208ENST00000560427 ZSWIM5Q9P217 1185 aa15.3■□□□□ 0.04
NEDD8-208ENST00000560427 RABGAP1Q9Y3P9 1069 aa15.3■□□□□ 0.04
NEDD8-208ENST00000560427 MYH4Q9Y623 1939 aa15.29■□□□□ 0.04
NEDD8-208ENST00000560427 A0A0G2JMZ2 1700 aa15.29■□□□□ 0.04
NEDD8-208ENST00000560427 TNKSO95271 1327 aa15.29■□□□□ 0.04
NEDD8-208ENST00000560427 RAD21O60216 631 aa15.29■□□□□ 0.04
NEDD8-208ENST00000560427 FLOT1O75955 427 aa15.29■□□□□ 0.04
NEDD8-208ENST00000560427 PKN2Q16513 984 aaKnown RBP15.29■□□□□ 0.04
NEDD8-208ENST00000560427 TSGA10IPQ3SY00 556 aa15.29■□□□□ 0.04
NEDD8-208ENST00000560427 FAM83BQ5T0W9 1011 aa15.29■□□□□ 0.04
NEDD8-208ENST00000560427 RCSD1Q6JBY9 416 aa15.29■□□□□ 0.04
NEDD8-208ENST00000560427 TMEM47Q9BQJ4 181 aa15.29■□□□□ 0.04
NEDD8-208ENST00000560427 BMP3P12645 472 aa15.28■□□□□ 0.04
NEDD8-208ENST00000560427 DSG3P32926 999 aa15.28■□□□□ 0.04
NEDD8-208ENST00000560427 SLC1A4P43007 532 aa15.28■□□□□ 0.04
NEDD8-208ENST00000560427 PRMT2P55345 433 aa15.28■□□□□ 0.04
NEDD8-208ENST00000560427 FCGRTP55899 365 aa15.28■□□□□ 0.04
NEDD8-208ENST00000560427 KRT32Q14532 448 aa15.28■□□□□ 0.04
NEDD8-208ENST00000560427 SART3Q15020 963 aaKnown RBP15.28■□□□□ 0.04
NEDD8-208ENST00000560427 STOX1Q6ZVD7 989 aa15.28■□□□□ 0.04
NEDD8-208ENST00000560427 ANKRD13CQ8N6S4 541 aa15.28■□□□□ 0.04
NEDD8-208ENST00000560427 GPRC5AQ8NFJ5 357 aa15.28■□□□□ 0.04
NEDD8-208ENST00000560427 CD99L2Q8TCZ2 262 aa15.28■□□□□ 0.04
NEDD8-208ENST00000560427 DCAF4Q8WV16 495 aa15.28■□□□□ 0.04
NEDD8-208ENST00000560427 PPP1R9AQ9ULJ8 1098 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms