RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 SHISA4Q96DD7 197 aa29.78■■■□□ 2.36
HLA-C-208ENST00000487245 CYP2D6P10635 497 aa29.77■■■□□ 2.36
HLA-C-208ENST00000487245 TOP1P11387 765 aaKnown RBP29.77■■■□□ 2.36
HLA-C-208ENST00000487245 USP5P45974 858 aa29.77■■■□□ 2.36
HLA-C-208ENST00000487245 FAM47AQ5JRC9 791 aa29.77■■■□□ 2.36
HLA-C-208ENST00000487245 FAM182BQ5T319 152 aa29.77■■■□□ 2.36
HLA-C-208ENST00000487245 DGKHQ86XP1 1220 aa29.77■■■□□ 2.36
HLA-C-208ENST00000487245 SRBD1Q8N5C6 995 aaKnown RBP29.77■■■□□ 2.36
HLA-C-208ENST00000487245 ANKS1AQ92625 1134 aa29.77■■■□□ 2.36
HLA-C-208ENST00000487245 MKRN1Q9UHC7 482 aaKnown RBP29.77■■■□□ 2.36
HLA-C-208ENST00000487245 ATP2B1P20020 1258 aa29.76■■■□□ 2.36
HLA-C-208ENST00000487245 CCDC93Q567U6 631 aa29.76■■■□□ 2.36
HLA-C-208ENST00000487245 SPECC1Q5M775 1068 aa29.76■■■□□ 2.36
HLA-C-208ENST00000487245 ZNF397Q8NF99 534 aaPredicted RBP29.76■■■□□ 2.36
HLA-C-208ENST00000487245 OGFRQ9NZT2 677 aa29.76■■■□□ 2.36
HLA-C-208ENST00000487245 PHLPP2Q6ZVD8 1323 aa29.76■■■□□ 2.35
HLA-C-208ENST00000487245 NAA30Q147X3 362 aaPredicted RBP29.76■■■□□ 2.35
HLA-C-208ENST00000487245 TNFRSF25Q93038 417 aa29.76■■■□□ 2.35
HLA-C-208ENST00000487245 CSRNP2Q9H175 543 aa29.76■■■□□ 2.35
HLA-C-208ENST00000487245 INTS13Q9NVM9 706 aa29.76■■■□□ 2.35
HLA-C-208ENST00000487245 ONECUT3O60422 494 aaPredicted RBP29.75■■■□□ 2.35
HLA-C-208ENST00000487245 PRR29P0C7W0 189 aa29.75■■■□□ 2.35
HLA-C-208ENST00000487245 SCG2P13521 617 aa29.75■■■□□ 2.35
HLA-C-208ENST00000487245 ERCC5P28715 1186 aaPredicted RBP29.75■■■□□ 2.35
HLA-C-208ENST00000487245 RPGRQ92834 1020 aaKnown RBP29.75■■■□□ 2.35
HLA-C-208ENST00000487245 ROBO3Q96MS0 1386 aa29.75■■■□□ 2.35
HLA-C-208ENST00000487245 TRAPPC10P48553 1259 aa29.74■■■□□ 2.35
HLA-C-208ENST00000487245 BCL11BQ9C0K0 894 aaPredicted RBP29.74■■■□□ 2.35
HLA-C-208ENST00000487245 KAT14Q9H8E8 782 aa29.74■■■□□ 2.35
HLA-C-208ENST00000487245 USP17L8P0C7I0 530 aa29.74■■■□□ 2.35
HLA-C-208ENST00000487245 ATP2B4P23634 1241 aa29.74■■■□□ 2.35
HLA-C-208ENST00000487245 ETF1P62495 437 aaKnown RBP29.74■■■□□ 2.35
HLA-C-208ENST00000487245 CBX1P83916 185 aa29.74■■■□□ 2.35
HLA-C-208ENST00000487245 PFKFB3Q16875 520 aaPredicted RBP29.74■■■□□ 2.35
HLA-C-208ENST00000487245 TMEM232C9JQI7 657 aa29.73■■■□□ 2.35
HLA-C-208ENST00000487245 NMT2O60551 498 aa29.73■■■□□ 2.35
HLA-C-208ENST00000487245 GNAQP50148 359 aa29.73■■■□□ 2.35
HLA-C-208ENST00000487245 TMEM139Q8IV31 216 aa29.73■■■□□ 2.35
HLA-C-208ENST00000487245 hCG_1642624A0A1W2PR95 340 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 ARHGAP6O43182 974 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 PLCD1P51178 756 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 TFAP4Q01664 338 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 RCSD1Q6JBY9 416 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 PRR5LQ6MZQ0 368 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 TCP11L1Q9NUJ3 509 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 JAG2Q9Y219 1238 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 CALML3P27482 149 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 ST5P78524 1137 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 EVX2Q03828 476 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 FMR1Q06787 632 aaKnown RBP eCLIP29.72■■■□□ 2.35
HLA-C-208ENST00000487245 NPY5RQ15761 445 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 TTC38Q5R3I4 469 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 UTP14CQ5TAP6 766 aaKnown RBP29.72■■■□□ 2.35
HLA-C-208ENST00000487245 SYT10Q6XYQ8 523 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 SH3RF1Q7Z6J0 888 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 SH3GLB2Q9NR46 395 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 DDX41Q9UJV9 622 aaKnown RBP29.72■■■□□ 2.35
HLA-C-208ENST00000487245 NFE2L3Q9Y4A8 694 aa29.72■■■□□ 2.35
HLA-C-208ENST00000487245 NLRP5P59047 1200 aa29.71■■■□□ 2.35
HLA-C-208ENST00000487245 MEX3CQ5U5Q3 659 aaKnown RBP29.71■■■□□ 2.35
HLA-C-208ENST00000487245 SH3RF3Q8TEJ3 882 aaPredicted RBP29.71■■■□□ 2.35
HLA-C-208ENST00000487245 RBM17Q96I25 401 aaKnown RBP29.71■■■□□ 2.35
HLA-C-208ENST00000487245 ZSCAN12O43309 604 aa29.7■■■□□ 2.35
HLA-C-208ENST00000487245 CRY2Q49AN0 593 aa29.7■■■□□ 2.35
HLA-C-208ENST00000487245 EARS2Q5JPH6 523 aaKnown RBP29.7■■■□□ 2.35
HLA-C-208ENST00000487245 REXO1L1PQ8IX06 675 aa29.7■■■□□ 2.35
HLA-C-208ENST00000487245 MKNK2Q9HBH9 465 aa29.7■■■□□ 2.35
HLA-C-208ENST00000487245 ZNF287Q9HBT7 754 aa29.7■■■□□ 2.35
HLA-C-208ENST00000487245 FAM205CA6NFA0 338 aa29.7■■■□□ 2.34
HLA-C-208ENST00000487245 PYM1Q9BRP8 204 aaKnown RBP29.7■■■□□ 2.34
HLA-C-208ENST00000487245 SLFN14P0C7P3 912 aa29.69■■■□□ 2.34
HLA-C-208ENST00000487245 ZSCAN20P17040 1043 aaPredicted RBP29.69■■■□□ 2.34
HLA-C-208ENST00000487245 TRIM65Q6PJ69 517 aa29.69■■■□□ 2.34
HLA-C-208ENST00000487245 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.68■■■□□ 2.34
HLA-C-208ENST00000487245 GPSM2P81274 684 aa29.68■■■□□ 2.34
HLA-C-208ENST00000487245 SPECC1LQ69YQ0 1117 aa29.68■■■□□ 2.34
HLA-C-208ENST00000487245 GOLGA6L9A6NEM1 432 aa29.68■■■□□ 2.34
HLA-C-208ENST00000487245 STX10O60499 249 aa29.68■■■□□ 2.34
HLA-C-208ENST00000487245 ATP2C1P98194 919 aaPredicted RBP29.68■■■□□ 2.34
HLA-C-208ENST00000487245 USP49Q70CQ1 688 aa29.68■■■□□ 2.34
HLA-C-208ENST00000487245 ZNF444Q8N0Y2 327 aaPredicted RBP29.68■■■□□ 2.34
HLA-C-208ENST00000487245 FAM177A1Q8N128 213 aaPredicted RBP29.68■■■□□ 2.34
HLA-C-208ENST00000487245 MED15Q96RN5 788 aa29.68■■■□□ 2.34
HLA-C-208ENST00000487245 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP29.68■■■□□ 2.34
HLA-C-208ENST00000487245 BBOX1O75936 387 aa29.67■■■□□ 2.34
HLA-C-208ENST00000487245 DMTNQ08495 405 aa29.67■■■□□ 2.34
HLA-C-208ENST00000487245 GRM4Q14833 912 aa29.67■■■□□ 2.34
HLA-C-208ENST00000487245 PDILTQ8N807 584 aa29.67■■■□□ 2.34
HLA-C-208ENST00000487245 PNMA1Q8ND90 353 aa29.67■■■□□ 2.34
HLA-C-208ENST00000487245 GTPBP4Q9BZE4 634 aaKnown RBP29.67■■■□□ 2.34
HLA-C-208ENST00000487245 CD209Q9NNX6 404 aa29.67■■■□□ 2.34
HLA-C-208ENST00000487245 LRRC4BQ9NT99 713 aa29.67■■■□□ 2.34
HLA-C-208ENST00000487245 GGA1Q9UJY5 639 aa29.67■■■□□ 2.34
HLA-C-208ENST00000487245 IL1R1P14778 569 aa29.66■■■□□ 2.34
HLA-C-208ENST00000487245 PLCG2P16885 1265 aa29.66■■■□□ 2.34
HLA-C-208ENST00000487245 CDK11BP21127 795 aaKnown RBP29.66■■■□□ 2.34
HLA-C-208ENST00000487245 ZNF174Q15697 407 aa29.66■■■□□ 2.34
HLA-C-208ENST00000487245 HOMER1Q86YM7 354 aa29.66■■■□□ 2.34
HLA-C-208ENST00000487245 SLF2Q8IX21 1173 aa29.66■■■□□ 2.34
HLA-C-208ENST00000487245 SRRTQ9BXP5 876 aaKnown RBP29.66■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms