RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 DCAF15Q66K64 600 aa12.35□□□□□ -0.43
HDAC6-228ENST00000486227 HDXQ7Z353 690 aa12.35□□□□□ -0.43
HDAC6-228ENST00000486227 TRMT44Q8IYL2 757 aaKnown RBP12.35□□□□□ -0.43
HDAC6-228ENST00000486227 BLIDQ8IZY5 108 aa12.35□□□□□ -0.43
HDAC6-228ENST00000486227 GJD4Q96KN9 370 aaPredicted RBP12.35□□□□□ -0.43
HDAC6-228ENST00000486227 LZTFL1Q9NQ48 299 aa12.35□□□□□ -0.43
HDAC6-228ENST00000486227 RNF216Q9NWF9 866 aaPredicted RBP12.35□□□□□ -0.43
HDAC6-228ENST00000486227 PPEF1O14829 653 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-228ENST00000486227 DIXDC1Q155Q3 683 aa12.34□□□□□ -0.43
HDAC6-228ENST00000486227 TCHPQ9BT92 498 aa12.34□□□□□ -0.43
HDAC6-228ENST00000486227 TRAF5O00463 557 aa12.34□□□□□ -0.43
HDAC6-228ENST00000486227 CHMP2AO43633 222 aa12.34□□□□□ -0.43
HDAC6-228ENST00000486227 CMA1P23946 247 aa12.34□□□□□ -0.43
HDAC6-228ENST00000486227 HS2ST1Q7LGA3 356 aa12.34□□□□□ -0.43
HDAC6-228ENST00000486227 USP37Q86T82 979 aa12.34□□□□□ -0.43
HDAC6-228ENST00000486227 SNX29Q8TEQ0 813 aa12.34□□□□□ -0.43
HDAC6-228ENST00000486227 DCPSQ96C86 337 aaKnown RBP12.34□□□□□ -0.43
HDAC6-228ENST00000486227 NAP1L4Q99733 375 aaKnown RBP12.34□□□□□ -0.43
HDAC6-228ENST00000486227 BLZF1Q9H2G9 400 aa12.34□□□□□ -0.43
HDAC6-228ENST00000486227 DEPDC5O75140 1603 aa12.34□□□□□ -0.43
HDAC6-228ENST00000486227 NDUFA8P51970 172 aa12.34□□□□□ -0.43
HDAC6-228ENST00000486227 RABL6Q3YEC7 729 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-228ENST00000486227 CCDC65Q8IXS2 484 aa12.34□□□□□ -0.43
HDAC6-228ENST00000486227 CCDC42Q96M95 316 aa12.34□□□□□ -0.43
HDAC6-228ENST00000486227 CARD6Q9BX69 1037 aa12.34□□□□□ -0.43
HDAC6-228ENST00000486227 FRMPD2Q68DX3 1309 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-228ENST00000486227 KRT13P13646 458 aa12.33□□□□□ -0.43
HDAC6-228ENST00000486227 PPP2R3AQ06190 1150 aa12.33□□□□□ -0.43
HDAC6-228ENST00000486227 IGSF22Q8N9C0 903 aa12.33□□□□□ -0.43
HDAC6-228ENST00000486227 GPR101Q96P66 508 aaPredicted RBP12.33□□□□□ -0.43
HDAC6-228ENST00000486227 CDHR2Q9BYE9 1310 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 CTAGE9A4FU28 777 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 SH2B2O14492 632 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-228ENST00000486227 PCP11498 1178 aaKnown RBP12.33□□□□□ -0.44
HDAC6-228ENST00000486227 TBC1D8BQ0IIM8 1120 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 INF2Q27J81 1249 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 CPXCR1Q8N123 301 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 SMCR8Q8TEV9 937 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-228ENST00000486227 MRFAP1L1Q96HT8 127 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 BAG1Q99933 345 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-228ENST00000486227 CEMIPQ8WUJ3 1361 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 MMP10P09238 476 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 CKAP4Q07065 602 aaKnown RBP12.33□□□□□ -0.44
HDAC6-228ENST00000486227 PRPF4BQ13523 1007 aaKnown RBP12.33□□□□□ -0.44
HDAC6-228ENST00000486227 EHBP1Q8NDI1 1231 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 AIFM3Q96NN9 605 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 GLT8D2Q9H1C3 349 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 RTEL1Q9NZ71 1219 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 NARFQ9UHQ1 456 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 SYNRGQ9UMZ2 1314 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 AKR1B15C9JRZ8 316 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-228ENST00000486227 ZBED4O75132 1171 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 DDAH1O94760 285 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 TOB2Q14106 344 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-228ENST00000486227 CALCRLQ16602 461 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 CC2D2BQ6DHV5 1058 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 DYMQ7RTS9 669 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 IPO4Q8TEX9 1081 aaKnown RBP12.33□□□□□ -0.44
HDAC6-228ENST00000486227 CELF1Q92879 486 aaKnown RBP12.33□□□□□ -0.44
HDAC6-228ENST00000486227 KIF2CQ99661 725 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 CD163L1Q9NR16 1453 aa12.33□□□□□ -0.44
HDAC6-228ENST00000486227 USP17L8P0C7I0 530 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 MECOMQ03112 1051 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 SCARF1Q14162 830 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 ATG9AQ7Z3C6 839 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 CSGALNACT2Q8N6G5 542 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 NEK11Q8NG66 645 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 CFBP00751 764 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 PAK1Q13153 545 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 SMIM5Q71RC9 77 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 CABP7Q86V35 215 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 MICALL1Q8N3F8 863 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 EBAG9O00559 213 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 OAS2P29728 719 aaKnown RBP12.32□□□□□ -0.44
HDAC6-228ENST00000486227 ZNF827Q17R98 1081 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 RNF187Q5TA31 235 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-228ENST00000486227 CNGA4Q8IV77 575 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 LRRC8AQ8IWT6 810 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 GUCA1BQ9UMX6 200 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 MINPP1Q9UNW1 487 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 COL15A1P39059 1388 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 PPLO60437 1756 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 MACROD2A1Z1Q3 448 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 GRAPQ13588 217 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 ERCC6LQ2NKX8 1250 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 TBC1D9BQ66K14 1250 aa12.32□□□□□ -0.44
HDAC6-228ENST00000486227 TDRD7Q8NHU6 1098 aaKnown RBP12.32□□□□□ -0.44
HDAC6-228ENST00000486227 GRAPLQ8TC17 118 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-228ENST00000486227 RAD51AP2Q09MP3 1159 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 SLC39A14Q15043 492 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 PDIA6Q15084 440 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 ZSCAN26Q16670 478 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 NCAPH2Q6IBW4 605 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 CNNM4Q6P4Q7 775 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 NOC4LQ9BVI4 516 aaKnown RBP12.31□□□□□ -0.44
HDAC6-228ENST00000486227 AS3MTQ9HBK9 375 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 PUF60Q9UHX1 559 aaKnown RBP12.31□□□□□ -0.44
HDAC6-228ENST00000486227 SPATA31A6Q5VVP1 1343 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 HSPA1LP34931 641 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 KIF23Q02241 960 aaPredicted RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms