RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 WRNIP1Q96S55 665 aa26.82■■□□□ 1.88
CPSF4-204ENST00000436336 SYNPO2Q9UMS6 1093 aa26.82■■□□□ 1.88
CPSF4-204ENST00000436336 CDKL5O76039 1030 aa26.82■■□□□ 1.88
CPSF4-204ENST00000436336 DDIT3P35638 169 aa26.82■■□□□ 1.88
CPSF4-204ENST00000436336 ARHGEF10LQ9HCE6 1279 aa26.82■■□□□ 1.88
CPSF4-204ENST00000436336 PPP1R12BO60237 982 aaPredicted RBP26.81■■□□□ 1.88
CPSF4-204ENST00000436336 USP2O75604 605 aaPredicted RBP26.81■■□□□ 1.88
CPSF4-204ENST00000436336 GJB2P29033 226 aa26.81■■□□□ 1.88
CPSF4-204ENST00000436336 INPP5BP32019 993 aa26.81■■□□□ 1.88
CPSF4-204ENST00000436336 KIF5BP33176 963 aa26.81■■□□□ 1.88
CPSF4-204ENST00000436336 HMGN5P82970 282 aaKnown RBP26.81■■□□□ 1.88
CPSF4-204ENST00000436336 GRM4Q14833 912 aa26.81■■□□□ 1.88
CPSF4-204ENST00000436336 PHIPQ8WWQ0 1821 aa26.81■■□□□ 1.88
CPSF4-204ENST00000436336 NTRK3Q16288 839 aa26.8■■□□□ 1.88
CPSF4-204ENST00000436336 MAP1SQ66K74 1059 aaPredicted RBP26.8■■□□□ 1.88
CPSF4-204ENST00000436336 SCYL3Q8IZE3 742 aa26.8■■□□□ 1.88
CPSF4-204ENST00000436336 PTPDC1A2A3K4 754 aa26.79■■□□□ 1.88
CPSF4-204ENST00000436336 JAK2O60674 1132 aa26.79■■□□□ 1.88
CPSF4-204ENST00000436336 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.79■■□□□ 1.886e-7■■■■□ 23.4
CPSF4-204ENST00000436336 FZD1Q9UP38 647 aa26.79■■□□□ 1.88
CPSF4-204ENST00000436336 IFNAR1P17181 557 aa26.79■■□□□ 1.88
CPSF4-204ENST00000436336 SNHG28P0DPA3 235 aa26.78■■□□□ 1.88
CPSF4-204ENST00000436336 PDHBP11177 359 aa26.78■■□□□ 1.88
CPSF4-204ENST00000436336 NOL9Q5SY16 702 aaKnown RBP26.78■■□□□ 1.88
CPSF4-204ENST00000436336 CIZ1Q9ULV3 898 aaPredicted RBP26.78■■□□□ 1.88
CPSF4-204ENST00000436336 MTMR7Q9Y216 660 aa26.78■■□□□ 1.88
CPSF4-204ENST00000436336 GNAQP50148 359 aa26.77■■□□□ 1.88
CPSF4-204ENST00000436336 PRKG1Q13976 671 aa26.77■■□□□ 1.88
CPSF4-204ENST00000436336 TMTC3Q6ZXV5 915 aa26.77■■□□□ 1.88
CPSF4-204ENST00000436336 GMCL1P1Q8NEA9 526 aa26.77■■□□□ 1.88
CPSF4-204ENST00000436336 ZKSCAN4Q969J2 545 aaPredicted RBP26.77■■□□□ 1.88
CPSF4-204ENST00000436336 SH2D4AQ9H788 454 aa26.77■■□□□ 1.88
CPSF4-204ENST00000436336 FRMD4AQ9P2Q2 1039 aaPredicted RBP26.77■■□□□ 1.88
CPSF4-204ENST00000436336 MAD2L2Q9UI95 211 aa26.77■■□□□ 1.88
CPSF4-204ENST00000436336 TMX2Q9Y320 296 aa26.77■■□□□ 1.88
CPSF4-204ENST00000436336 A0A1W2PRG0 241 aa26.76■■□□□ 1.88
CPSF4-204ENST00000436336 PALM3A6NDB9 673 aaPredicted RBP26.76■■□□□ 1.88
CPSF4-204ENST00000436336 DTNBO60941 627 aa26.76■■□□□ 1.88
CPSF4-204ENST00000436336 PARP1P09874 1014 aaKnown RBP26.76■■□□□ 1.88
CPSF4-204ENST00000436336 IREB2P48200 963 aaKnown RBP26.76■■□□□ 1.88
CPSF4-204ENST00000436336 USP17L5A8MUK1 530 aa26.76■■□□□ 1.87
CPSF4-204ENST00000436336 DDX11Q96FC9 970 aa26.76■■□□□ 1.87
CPSF4-204ENST00000436336 PICK1Q9NRD5 415 aa26.76■■□□□ 1.87
CPSF4-204ENST00000436336 KIF3AQ9Y496 699 aa26.76■■□□□ 1.87
CPSF4-204ENST00000436336 STK36Q9NRP7 1315 aa26.75■■□□□ 1.87
CPSF4-204ENST00000436336 ECE1P42892 770 aa26.75■■□□□ 1.87
CPSF4-204ENST00000436336 MAP3K9P80192 1104 aa26.75■■□□□ 1.87
CPSF4-204ENST00000436336 FAM184AQ8NB25 1140 aa26.75■■□□□ 1.87
CPSF4-204ENST00000436336 ACER1Q8TDN7 264 aa26.75■■□□□ 1.87
CPSF4-204ENST00000436336 CHMP5Q9NZZ3 219 aa26.75■■□□□ 1.87
CPSF4-204ENST00000436336 F5H6K3 240 aa26.74■■□□□ 1.87
CPSF4-204ENST00000436336 PLEKHA8P1O95397 391 aa26.74■■□□□ 1.87
CPSF4-204ENST00000436336 KLRC3Q07444 240 aa26.74■■□□□ 1.87
CPSF4-204ENST00000436336 MAP3K11Q16584 847 aa26.74■■□□□ 1.87
CPSF4-204ENST00000436336 ASPRV1Q53RT3 343 aa26.74■■□□□ 1.87
CPSF4-204ENST00000436336 SLFN13Q68D06 897 aa26.74■■□□□ 1.87
CPSF4-204ENST00000436336 USP17L2Q6R6M4 530 aa26.74■■□□□ 1.87
CPSF4-204ENST00000436336 NBPF11Q86T75 865 aa26.74■■□□□ 1.87
CPSF4-204ENST00000436336 STAG2Q8N3U4 1231 aa26.74■■□□□ 1.87
CPSF4-204ENST00000436336 DCAF4Q8WV16 495 aa26.74■■□□□ 1.87
CPSF4-204ENST00000436336 PHKBQ93100 1093 aa26.74■■□□□ 1.87
CPSF4-204ENST00000436336 LZTS2Q9BRK4 669 aa26.74■■□□□ 1.87
CPSF4-204ENST00000436336 TRPM7Q96QT4 1865 aa26.74■■□□□ 1.87
CPSF4-204ENST00000436336 FMNL1O95466 1100 aaPredicted RBP26.73■■□□□ 1.87
CPSF4-204ENST00000436336 FDPSP14324 419 aaKnown RBP26.73■■□□□ 1.87
CPSF4-204ENST00000436336 SSRP1Q08945 709 aaKnown RBP26.73■■□□□ 1.87
CPSF4-204ENST00000436336 RASGRP2Q7LDG7 609 aa26.73■■□□□ 1.87
CPSF4-204ENST00000436336 TRIM22Q8IYM9 498 aa26.73■■□□□ 1.87
CPSF4-204ENST00000436336 CMTR1Q8N1G2 835 aaKnown RBP26.73■■□□□ 1.87
CPSF4-204ENST00000436336 AS3MTQ9HBK9 375 aa26.73■■□□□ 1.87
CPSF4-204ENST00000436336 GOPCQ9HD26 462 aa26.73■■□□□ 1.87
CPSF4-204ENST00000436336 ORC3Q9UBD5 711 aaPredicted RBP26.73■■□□□ 1.87
CPSF4-204ENST00000436336 PTPRAP18433 802 aa26.73■■□□□ 1.87
CPSF4-204ENST00000436336 PDCP20941 246 aa26.73■■□□□ 1.87
CPSF4-204ENST00000436336 FUT2Q10981 343 aa26.73■■□□□ 1.87
CPSF4-204ENST00000436336 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.73■■□□□ 1.87
CPSF4-204ENST00000436336 CCDC84Q86UT8 332 aaPredicted RBP26.73■■□□□ 1.87
CPSF4-204ENST00000436336 SRBD1Q8N5C6 995 aaKnown RBP26.73■■□□□ 1.87
CPSF4-204ENST00000436336 RNF26Q9BY78 433 aaPredicted RBP26.73■■□□□ 1.87
CPSF4-204ENST00000436336 PPFIA3O75145 1194 aa26.72■■□□□ 1.87
CPSF4-204ENST00000436336 ZNF543Q08ER8 600 aa26.72■■□□□ 1.87
CPSF4-204ENST00000436336 TTLL12Q14166 644 aaPredicted RBP26.72■■□□□ 1.87
CPSF4-204ENST00000436336 GPATCH4Q5T3I0 446 aaKnown RBP26.72■■□□□ 1.87
CPSF4-204ENST00000436336 ARMC9Q7Z3E5 817 aa26.72■■□□□ 1.87
CPSF4-204ENST00000436336 CCDC82Q8N4S0 544 aa26.72■■□□□ 1.87
CPSF4-204ENST00000436336 GMCL1Q96IK5 515 aa26.72■■□□□ 1.87
CPSF4-204ENST00000436336 WDR18Q9BV38 432 aa26.72■■□□□ 1.87
CPSF4-204ENST00000436336 SLC26A6Q9BXS9 759 aa26.72■■□□□ 1.87
CPSF4-204ENST00000436336 CSADQ9Y600 493 aa26.72■■□□□ 1.87
CPSF4-204ENST00000436336 BAZ2BQ9UIF8 2168 aaKnown RBP26.72■■□□□ 1.87
CPSF4-204ENST00000436336 CNTNAP5Q8WYK1 1306 aa26.71■■□□□ 1.87
CPSF4-204ENST00000436336 KLRF2D3W0D1 207 aa26.71■■□□□ 1.87
CPSF4-204ENST00000436336 TRAF5O00463 557 aa26.71■■□□□ 1.87
CPSF4-204ENST00000436336 NDUFB10O96000 172 aa26.71■■□□□ 1.87
CPSF4-204ENST00000436336 GOLGA8HP0CJ92 632 aa26.71■■□□□ 1.87
CPSF4-204ENST00000436336 PDIA4P13667 645 aaKnown RBP26.71■■□□□ 1.87
CPSF4-204ENST00000436336 SMARCA1P28370 1054 aa26.71■■□□□ 1.87
CPSF4-204ENST00000436336 VCPKMTQ9H867 229 aa26.71■■□□□ 1.87
CPSF4-204ENST00000436336 RAD21O60216 631 aa26.7■■□□□ 1.87
CPSF4-204ENST00000436336 SLC1A4P43007 532 aa26.7■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms