RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CNOT7Q9UIV1 285 aaKnown RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 NDUFS2O75306 463 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 LRG1P02750 347 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 IL6STP40189 918 aaPredicted RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 CREMQ03060 361 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 BFSP1Q12934 665 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 NBPF12Q5TAG4 269 aaPredicted RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 CLEC4GQ6UXB4 293 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 PATL1Q86TB9 770 aaKnown RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 LUZP1Q86V48 1076 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 RGL4Q8IZJ4 473 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 NCOA7Q8NI08 942 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 CSRNP1Q96S65 589 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 MMTAG2Q9BU76 263 aaKnown RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 C1QTNF1Q9BXJ1 281 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 ABCG4Q9H172 646 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 ECHDC1Q9NTX5 307 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 NLRP1Q9C000 1473 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 ARHGEF35A5YM69 484 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 H3BUI4 141 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 TBC1D12O60347 775 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 C6orf222P0C671 652 aaPredicted RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 MAP2K2P36507 400 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 USP8P40818 1118 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 FBXW4P57775 412 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 MDM2Q00987 491 aaPredicted RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 TCERG1LQ5VWI1 586 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 IER5Q5VY09 327 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 ANKRD23Q86SG2 305 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 PALM2Q8IXS6 379 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 EID3Q8N140 333 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 FHDC1Q9C0D6 1143 aaPredicted RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 INTS2Q9H0H0 1204 aaKnown RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 IFT122Q9HBG6 1241 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 PARP2Q9UGN5 583 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 FLT1P17948 1338 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 MAP3K15Q6ZN16 1313 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 ZFYVE16Q7Z3T8 1539 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 SMARCA4P51532 1647 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 VPS37CA5D8V6 355 aaPredicted RBP4.57□□□□□ -1.68
USH2A-202ENST00000366942 USP17L15C9J2P7 530 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 USP17L13C9JLJ4 530 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 USP17L11C9JVI0 530 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 USP17L18D6R9N7 530 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 USP17L22D6RA61 530 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 USP17L17D6RBQ6 530 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 USP17L19D6RCP7 530 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 USP17L20D6RJB6 530 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 GRM8O00222 908 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 TNNC2P02585 160 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 PYGMP11217 842 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 ACADMP11310 421 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 CA4P22748 312 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 RPL13P26373 211 aaKnown RBP4.57□□□□□ -1.68
USH2A-202ENST00000366942 KPNA1P52294 538 aaPredicted RBP4.57□□□□□ -1.68
USH2A-202ENST00000366942 USP17L24Q0WX57 530 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 CERKLQ49MI3 558 aaPredicted RBP4.57□□□□□ -1.68
USH2A-202ENST00000366942 CCDC191Q8NCU4 936 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 GPRC5AQ8NFJ5 357 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 TBC1D31Q96DN5 1066 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 WNK4Q96J92 1243 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 NUP62CLQ9H1M0 184 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 MAN1C1Q9NR34 630 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 TMEM2Q9UHN6 1383 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 GPSM2P81274 684 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 ELAVL2Q12926 359 aaKnown RBP4.57□□□□□ -1.68
USH2A-202ENST00000366942 ABCB5Q2M3G0 1257 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 TMEM164Q5U3C3 297 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 BLOC1S2Q6QNY1 142 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 ARMCX2Q7L311 632 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 SRGAP1Q7Z6B7 1085 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 SH3TC2Q8TF17 1288 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 MFSD14AQ96MC6 490 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 NUP85Q9BW27 656 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 CYP46A1Q9Y6A2 500 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 SLC4A4Q9Y6R1 1079 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 DPP6P42658 865 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 EXOSC10Q01780 885 aaKnown RBP4.57□□□□□ -1.68
USH2A-202ENST00000366942 TEAD4Q15561 434 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 IFIT1BQ5T764 474 aaKnown RBP4.57□□□□□ -1.68
USH2A-202ENST00000366942 PDXDC2PQ6P474 469 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 PSRC1Q6PGN9 363 aaPredicted RBP4.57□□□□□ -1.68
USH2A-202ENST00000366942 RNF139Q8WU17 664 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 SPACA7Q96KW9 195 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 VPS33BQ9H267 617 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 TXNDC16Q9P2K2 825 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 AKT3Q9Y243 479 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 NCKAP1Q9Y2A7 1128 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 POLR3AO14802 1390 aaPredicted RBP4.57□□□□□ -1.68
USH2A-202ENST00000366942 VSTM5A8MXK1 200 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 IKBKBO14920 756 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 ALADP13716 330 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 CYP2B6P20813 491 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 ARPP19P56211 112 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 C1QTNF8P60827 252 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 SSRP1Q08945 709 aaKnown RBP4.57□□□□□ -1.68
USH2A-202ENST00000366942 TCP10Q12799 353 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 STYK1Q6J9G0 422 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 GLB1LQ6UWU2 654 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms