RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 PPP4CP60510 307 aa23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 C15orf52Q6ZUT6 534 aaKnown RBP23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 ZNF804AQ7Z570 1209 aa23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 VSTM4Q8IW00 320 aa23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 ENOX1Q8TC92 643 aaKnown RBP23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 ANKS1AQ92625 1134 aa23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 GPR101Q96P66 508 aaPredicted RBP23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 KAT14Q9H8E8 782 aa23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 DACH1Q9UI36 760 aa23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 SLFN14P0C7P3 912 aa23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 KCNJ6P48051 423 aa23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 GSTO1P78417 241 aa23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 SH3RF1Q7Z6J0 888 aa23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 ZNF592Q92610 1267 aa23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 LRRC4BQ9NT99 713 aa23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 TMEM232C9JQI7 657 aa23.76■■□□□ 1.39
CCDC88B-203ENST00000359902 ADAMTS3O15072 1205 aa23.76■■□□□ 1.39
CCDC88B-203ENST00000359902 NT5C2P49902 561 aa23.76■■□□□ 1.39
CCDC88B-203ENST00000359902 ATP2C1P98194 919 aaPredicted RBP23.76■■□□□ 1.39
CCDC88B-203ENST00000359902 PTGDRQ13258 359 aa23.76■■□□□ 1.39
CCDC88B-203ENST00000359902 PRR5LQ6MZQ0 368 aa23.76■■□□□ 1.39
CCDC88B-203ENST00000359902 MED15Q96RN5 788 aa23.76■■□□□ 1.39
CCDC88B-203ENST00000359902 BAG3O95817 575 aa23.76■■□□□ 1.39
CCDC88B-203ENST00000359902 ZNF18P17022 549 aa23.76■■□□□ 1.39
CCDC88B-203ENST00000359902 CCDC112Q8NEF3 446 aa23.76■■□□□ 1.39
CCDC88B-203ENST00000359902 GJD4Q96KN9 370 aaPredicted RBP23.76■■□□□ 1.39
CCDC88B-203ENST00000359902 INTS13Q9NVM9 706 aa23.76■■□□□ 1.39
CCDC88B-203ENST00000359902 NFE2L3Q9Y4A8 694 aa23.76■■□□□ 1.39
CCDC88B-203ENST00000359902 ROBO3Q96MS0 1386 aa23.75■■□□□ 1.39
CCDC88B-203ENST00000359902 SPATA31A6Q5VVP1 1343 aa23.75■■□□□ 1.39
CCDC88B-203ENST00000359902 PIK3AP1Q6ZUJ8 805 aa23.75■■□□□ 1.39
CCDC88B-203ENST00000359902 PAGE5Q96GU1 130 aa23.75■■□□□ 1.39
CCDC88B-203ENST00000359902 ZMYND15Q9H091 742 aa23.75■■□□□ 1.39
CCDC88B-203ENST00000359902 TRAPPC10P48553 1259 aa23.75■■□□□ 1.39
CCDC88B-203ENST00000359902 GPSM2P81274 684 aa23.75■■□□□ 1.39
CCDC88B-203ENST00000359902 PNMA1Q8ND90 353 aa23.75■■□□□ 1.39
CCDC88B-203ENST00000359902 HSP90AA4PQ58FG1 418 aa23.74■■□□□ 1.39
CCDC88B-203ENST00000359902 TGFBRAP1Q8WUH2 860 aa23.74■■□□□ 1.39
CCDC88B-203ENST00000359902 CCDC34Q96HJ3 373 aa23.74■■□□□ 1.39
CCDC88B-203ENST00000359902 MKNK2Q9HBH9 465 aa23.74■■□□□ 1.39
CCDC88B-203ENST00000359902 PSDA5PKW4 1024 aaPredicted RBP23.73■■□□□ 1.39
CCDC88B-203ENST00000359902 VWA3AA6NCI4 1184 aa23.73■■□□□ 1.39
CCDC88B-203ENST00000359902 NRDCO43847 1150 aa23.73■■□□□ 1.39
CCDC88B-203ENST00000359902 AFMP43652 599 aa23.73■■□□□ 1.39
CCDC88B-203ENST00000359902 TRMT44Q8IYL2 757 aaKnown RBP23.73■■□□□ 1.39
CCDC88B-203ENST00000359902 STAG2Q8N3U4 1231 aa23.73■■□□□ 1.39
CCDC88B-203ENST00000359902 RPGRQ92834 1020 aaKnown RBP23.73■■□□□ 1.39
CCDC88B-203ENST00000359902 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.73■■□□□ 1.39
CCDC88B-203ENST00000359902 LDHCP07864 332 aa23.73■■□□□ 1.39
CCDC88B-203ENST00000359902 ADRA2BP18089 450 aa23.73■■□□□ 1.39
CCDC88B-203ENST00000359902 ERCC5P28715 1186 aaPredicted RBP23.73■■□□□ 1.39
CCDC88B-203ENST00000359902 PLCD1P51178 756 aa23.73■■□□□ 1.39
CCDC88B-203ENST00000359902 ANKRD7Q92527 254 aa23.73■■□□□ 1.39
CCDC88B-203ENST00000359902 TMX1Q9H3N1 280 aa23.73■■□□□ 1.39
CCDC88B-203ENST00000359902 USP17L3A6NCW0 530 aa23.72■■□□□ 1.39
CCDC88B-203ENST00000359902 USP17L4A6NCW7 530 aa23.72■■□□□ 1.39
CCDC88B-203ENST00000359902 TOP1P11387 765 aaKnown RBP23.72■■□□□ 1.39
CCDC88B-203ENST00000359902 PTPN21Q16825 1174 aa23.72■■□□□ 1.39
CCDC88B-203ENST00000359902 USP17L1Q7RTZ2 530 aa23.72■■□□□ 1.39
CCDC88B-203ENST00000359902 CERKQ8TCT0 537 aa23.72■■□□□ 1.39
CCDC88B-203ENST00000359902 PPP1R13BQ96KQ4 1090 aa23.72■■□□□ 1.39
CCDC88B-203ENST00000359902 TCP11L1Q9NUJ3 509 aa23.72■■□□□ 1.39
CCDC88B-203ENST00000359902 GRM4Q14833 912 aa23.72■■□□□ 1.39
CCDC88B-203ENST00000359902 CRY2Q49AN0 593 aa23.72■■□□□ 1.39
CCDC88B-203ENST00000359902 RTFDC1Q9BY42 306 aaPredicted RBP23.72■■□□□ 1.39
CCDC88B-203ENST00000359902 CD209Q9NNX6 404 aa23.72■■□□□ 1.39
CCDC88B-203ENST00000359902 SH3GLB2Q9NR46 395 aa23.72■■□□□ 1.39
CCDC88B-203ENST00000359902 CALML3P27482 149 aa23.71■■□□□ 1.39
CCDC88B-203ENST00000359902 DPYDQ12882 1025 aa23.71■■□□□ 1.39
CCDC88B-203ENST00000359902 CCDC178Q5BJE1 867 aa23.71■■□□□ 1.39
CCDC88B-203ENST00000359902 AMOTL1Q8IY63 956 aa23.71■■□□□ 1.39
CCDC88B-203ENST00000359902 MAD2L2Q9UI95 211 aa23.71■■□□□ 1.39
CCDC88B-203ENST00000359902 KIF2AO00139 706 aaPredicted RBP23.71■■□□□ 1.39
CCDC88B-203ENST00000359902 TSPY3P0CV98 308 aa23.71■■□□□ 1.39
CCDC88B-203ENST00000359902 TSPY8P0CW00 308 aa23.71■■□□□ 1.39
CCDC88B-203ENST00000359902 CDK11BP21127 795 aaKnown RBP23.71■■□□□ 1.39
CCDC88B-203ENST00000359902 CASP1P29466 404 aa23.71■■□□□ 1.39
CCDC88B-203ENST00000359902 IL17AQ16552 155 aa23.71■■□□□ 1.39
CCDC88B-203ENST00000359902 BLIDQ8IZY5 108 aa23.71■■□□□ 1.39
CCDC88B-203ENST00000359902 ZNF444Q8N0Y2 327 aaPredicted RBP23.71■■□□□ 1.39
CCDC88B-203ENST00000359902 SLC44A5Q8NCS7 719 aa23.71■■□□□ 1.39
CCDC88B-203ENST00000359902 GYS1P13807 737 aa23.7■■□□□ 1.38
CCDC88B-203ENST00000359902 MCM7P33993 719 aa23.7■■□□□ 1.38
CCDC88B-203ENST00000359902 CT47A1Q5JQC4 288 aaPredicted RBP23.7■■□□□ 1.38
CCDC88B-203ENST00000359902 MAPKAPK5Q8IW41 473 aa23.7■■□□□ 1.38
CCDC88B-203ENST00000359902 GPKOWQ92917 476 aaPredicted RBP eCLIP23.7■■□□□ 1.38
CCDC88B-203ENST00000359902 SAMSN1Q9NSI8 373 aaKnown RBP23.7■■□□□ 1.38
CCDC88B-203ENST00000359902 ONECUT3O60422 494 aaPredicted RBP23.7■■□□□ 1.38
CCDC88B-203ENST00000359902 UFL1O94874 794 aa23.7■■□□□ 1.38
CCDC88B-203ENST00000359902 TBX2Q13207 712 aaPredicted RBP23.7■■□□□ 1.38
CCDC88B-203ENST00000359902 SYCP1Q15431 976 aa23.7■■□□□ 1.38
CCDC88B-203ENST00000359902 GSDMAQ96QA5 445 aa23.7■■□□□ 1.38
CCDC88B-203ENST00000359902 BCL11BQ9C0K0 894 aaPredicted RBP23.7■■□□□ 1.38
CCDC88B-203ENST00000359902 SAP30BPQ9UHR5 308 aaKnown RBP23.7■■□□□ 1.38
CCDC88B-203ENST00000359902 ATP2B4P23634 1241 aa23.69■■□□□ 1.38
CCDC88B-203ENST00000359902 GNAQP50148 359 aa23.69■■□□□ 1.38
CCDC88B-203ENST00000359902 E2F4Q16254 413 aa23.69■■□□□ 1.38
CCDC88B-203ENST00000359902 SLC35G1Q2M3R5 365 aa23.69■■□□□ 1.38
CCDC88B-203ENST00000359902 KIF18AQ8NI77 898 aa23.69■■□□□ 1.38
CCDC88B-203ENST00000359902 PCDHA4Q9UN74 947 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms