RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 COL2A1P02458 1487 aaPredicted RBP20.13■□□□□ 0.81
CLDN4-201ENST00000340958 TTLL1O95922 423 aa20.13■□□□□ 0.81
CLDN4-201ENST00000340958 PTMSP20962 102 aa20.13■□□□□ 0.81
CLDN4-201ENST00000340958 MAP1SQ66K74 1059 aaPredicted RBP20.13■□□□□ 0.81
CLDN4-201ENST00000340958 CABP5Q9NP86 173 aa20.13■□□□□ 0.81
CLDN4-201ENST00000340958 CLIP2Q9UDT6 1046 aa20.13■□□□□ 0.81
CLDN4-201ENST00000340958 POLR2AP24928 1970 aaKnown RBP20.12■□□□□ 0.81
CLDN4-201ENST00000340958 CNTNAP1P78357 1384 aa20.12■□□□□ 0.81
CLDN4-201ENST00000340958 PLIN4Q96Q06 1357 aa20.12■□□□□ 0.81
CLDN4-201ENST00000340958 STK36Q9NRP7 1315 aa20.12■□□□□ 0.81
CLDN4-201ENST00000340958 ABCB5Q2M3G0 1257 aa20.12■□□□□ 0.81
CLDN4-201ENST00000340958 GDF11O95390 407 aa20.11■□□□□ 0.81
CLDN4-201ENST00000340958 PLEKHA8P1O95397 391 aa20.11■□□□□ 0.81
CLDN4-201ENST00000340958 GNAQP50148 359 aa20.11■□□□□ 0.81
CLDN4-201ENST00000340958 TATDN1Q6P1N9 297 aa20.11■□□□□ 0.81
CLDN4-201ENST00000340958 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.11■□□□□ 0.81
CLDN4-201ENST00000340958 SCAF8Q9UPN6 1271 aaKnown RBP20.11■□□□□ 0.81
CLDN4-201ENST00000340958 DEXIO95424 95 aa20.11■□□□□ 0.81
CLDN4-201ENST00000340958 GNL2Q13823 731 aaKnown RBP20.11■□□□□ 0.81
CLDN4-201ENST00000340958 RASA3Q14644 834 aa20.11■□□□□ 0.81
CLDN4-201ENST00000340958 TMTC3Q6ZXV5 915 aa20.11■□□□□ 0.81
CLDN4-201ENST00000340958 LRRC47Q8N1G4 583 aaKnown RBP20.11■□□□□ 0.81
CLDN4-201ENST00000340958 MAP3K14Q99558 947 aa20.11■□□□□ 0.81
CLDN4-201ENST00000340958 ZSCAN16Q9H4T2 348 aaPredicted RBP20.11■□□□□ 0.81
CLDN4-201ENST00000340958 MYH8P13535 1937 aa20.11■□□□□ 0.81
CLDN4-201ENST00000340958 HSPA6P17066 643 aa20.1■□□□□ 0.81
CLDN4-201ENST00000340958 GRM4Q14833 912 aa20.1■□□□□ 0.81
CLDN4-201ENST00000340958 TMEM179Q6ZVK1 233 aa20.1■□□□□ 0.81
CLDN4-201ENST00000340958 METTL16Q86W50 562 aaKnown RBP20.1■□□□□ 0.81
CLDN4-201ENST00000340958 CHAMP1Q96JM3 812 aa20.1■□□□□ 0.81
CLDN4-201ENST00000340958 RNF26Q9BY78 433 aaPredicted RBP20.1■□□□□ 0.81
CLDN4-201ENST00000340958 KANSL2Q9H9L4 492 aa20.1■□□□□ 0.81
CLDN4-201ENST00000340958 RAD21O60216 631 aa20.09■□□□□ 0.81
CLDN4-201ENST00000340958 PARP1P09874 1014 aaKnown RBP20.09■□□□□ 0.81
CLDN4-201ENST00000340958 OTUD7BQ6GQQ9 843 aa20.09■□□□□ 0.81
CLDN4-201ENST00000340958 MIGA2Q7L4E1 593 aa20.09■□□□□ 0.81
CLDN4-201ENST00000340958 NBPF11Q86T75 865 aa20.09■□□□□ 0.81
CLDN4-201ENST00000340958 CLEC10AQ8IUN9 316 aa20.09■□□□□ 0.81
CLDN4-201ENST00000340958 AIFM3Q96NN9 605 aa20.09■□□□□ 0.81
CLDN4-201ENST00000340958 V9GY48 417 aaPredicted RBP20.09■□□□□ 0.81
CLDN4-201ENST00000340958 IGKV6D-41A0A0C4DH26 115 aa20.09■□□□□ 0.81
CLDN4-201ENST00000340958 ITGBL1O95965 494 aaPredicted RBP20.09■□□□□ 0.81
CLDN4-201ENST00000340958 XBP1P17861 261 aa20.09■□□□□ 0.81
CLDN4-201ENST00000340958 FBXO18Q8NFZ0 1043 aa20.09■□□□□ 0.81
CLDN4-201ENST00000340958 ISY1Q9ULR0 285 aaKnown RBP20.09■□□□□ 0.81
CLDN4-201ENST00000340958 PRPF40AO75400 957 aaKnown RBP20.08■□□□□ 0.8
CLDN4-201ENST00000340958 ANGEL2Q5VTE6 544 aaKnown RBP20.08■□□□□ 0.8
CLDN4-201ENST00000340958 SRBD1Q8N5C6 995 aaKnown RBP20.08■□□□□ 0.8
CLDN4-201ENST00000340958 PIBF1Q8WXW3 757 aa20.08■□□□□ 0.8
CLDN4-201ENST00000340958 PGAP2Q9UHJ9 254 aa20.08■□□□□ 0.8
CLDN4-201ENST00000340958 ASTN2O75129 1339 aaPredicted RBP20.07■□□□□ 0.8
CLDN4-201ENST00000340958 PRPF3O43395 683 aaKnown RBP20.07■□□□□ 0.8
CLDN4-201ENST00000340958 GH2P01242 217 aa20.07■□□□□ 0.8
CLDN4-201ENST00000340958 GOLGA8HP0CJ92 632 aa20.07■□□□□ 0.8
CLDN4-201ENST00000340958 ICA1Q05084 483 aa20.07■□□□□ 0.8
CLDN4-201ENST00000340958 DNM1Q05193 864 aaKnown RBP20.07■□□□□ 0.8
CLDN4-201ENST00000340958 SEPT2Q15019 361 aa20.07■□□□□ 0.8
CLDN4-201ENST00000340958 ZC3H15Q8WU90 426 aaKnown RBP20.07■□□□□ 0.8
CLDN4-201ENST00000340958 LZTS2Q9BRK4 669 aa20.07■□□□□ 0.8
CLDN4-201ENST00000340958 MAD2L2Q9UI95 211 aa20.07■□□□□ 0.8
CLDN4-201ENST00000340958 PASKQ96RG2 1323 aa20.07■□□□□ 0.8
CLDN4-201ENST00000340958 hCG_1642624A0A1W2PR95 340 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 GUCY1A2P33402 732 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 NOVP48745 357 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 KRT85P78386 507 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 SAFBQ15424 915 aaKnown RBP eCLIP20.06■□□□□ 0.8
CLDN4-201ENST00000340958 CSPP1Q1MSJ5 1256 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 KRT40Q6A162 431 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 APOBEC3FQ8IUX4 373 aaKnown RBP20.06■□□□□ 0.8
CLDN4-201ENST00000340958 CDAN1Q8IWY9 1227 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 STAG2Q8N3U4 1231 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 DEFB129Q9H1M3 183 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 GJB4Q9NTQ9 266 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 CNPY2Q9Y2B0 182 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 KLRF2D3W0D1 207 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 UBE2Q2LH0YL09 131 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 TBC1D12O60347 775 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 EEF2P13639 858 aaKnown RBP20.06■□□□□ 0.8
CLDN4-201ENST00000340958 RESTQ13127 1097 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 USP17L2Q6R6M4 530 aa20.06■□□□□ 0.8
CLDN4-201ENST00000340958 RBM27Q9P2N5 1060 aaKnown RBP20.06■□□□□ 0.8
CLDN4-201ENST00000340958 TRPM7Q96QT4 1865 aa20.05■□□□□ 0.8
CLDN4-201ENST00000340958 USP17L5A8MUK1 530 aa20.05■□□□□ 0.8
CLDN4-201ENST00000340958 FIBPO43427 364 aa20.05■□□□□ 0.8
CLDN4-201ENST00000340958 SHROOM1Q2M3G4 852 aaPredicted RBP20.05■□□□□ 0.8
CLDN4-201ENST00000340958 FAM173BQ6P4H8 233 aa20.05■□□□□ 0.8
CLDN4-201ENST00000340958 GGA3Q9NZ52 723 aa20.05■□□□□ 0.8
CLDN4-201ENST00000340958 SIPA1L1O43166 1804 aa20.05■□□□□ 0.8
CLDN4-201ENST00000340958 APLP1P51693 650 aa20.04■□□□□ 0.8
CLDN4-201ENST00000340958 FMR1Q06787 632 aaKnown RBP eCLIP20.04■□□□□ 0.8
CLDN4-201ENST00000340958 FUT2Q10981 343 aa20.04■□□□□ 0.8
CLDN4-201ENST00000340958 CCDC96Q2M329 555 aa20.04■□□□□ 0.8
CLDN4-201ENST00000340958 RGS22Q8NE09 1264 aa20.04■□□□□ 0.8
CLDN4-201ENST00000340958 GLIS2Q9BZE0 524 aaPredicted RBP20.04■□□□□ 0.8
CLDN4-201ENST00000340958 GDPD2Q9HCC8 539 aa20.04■□□□□ 0.8
CLDN4-201ENST00000340958 NYAP2Q9P242 653 aa20.04■□□□□ 0.8
CLDN4-201ENST00000340958 FRMPD2Q68DX3 1309 aaPredicted RBP20.04■□□□□ 0.8
CLDN4-201ENST00000340958 CNTNAP5Q8WYK1 1306 aa20.04■□□□□ 0.8
CLDN4-201ENST00000340958 PALM3A6NDB9 673 aaPredicted RBP20.04■□□□□ 0.8
CLDN4-201ENST00000340958 TRAF5O00463 557 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms