RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 CCDC88AQ3V6T2 1871 aa13.43□□□□□ -0.26
LINC00538-201ENST00000626109 TIAM2Q8IVF5 1701 aa13.43□□□□□ -0.26
LINC00538-201ENST00000626109 DICER1Q9UPY3 1922 aaKnown RBP13.43□□□□□ -0.26
LINC00538-201ENST00000626109 DNAJA1P31689 397 aaKnown RBP13.43□□□□□ -0.26
LINC00538-201ENST00000626109 FKBP1AP62942 108 aaKnown RBP13.43□□□□□ -0.26
LINC00538-201ENST00000626109 CXCL9Q07325 125 aa13.43□□□□□ -0.26
LINC00538-201ENST00000626109 DACT2Q5SW24 774 aa13.43□□□□□ -0.26
LINC00538-201ENST00000626109 RAVER1Q8IY67 606 aaKnown RBP13.43□□□□□ -0.26
LINC00538-201ENST00000626109 KBTBD3Q8NAB2 608 aa13.43□□□□□ -0.26
LINC00538-201ENST00000626109 FSD1Q9BTV5 496 aa13.43□□□□□ -0.26
LINC00538-201ENST00000626109 PIH1D3Q9NQM4 214 aaKnown RBP13.43□□□□□ -0.26
LINC00538-201ENST00000626109 MYO3BQ8WXR4 1341 aa13.42□□□□□ -0.26
LINC00538-201ENST00000626109 WDR33Q9C0J8 1336 aaKnown RBP13.42□□□□□ -0.26
LINC00538-201ENST00000626109 CHD4Q14839 1912 aa13.42□□□□□ -0.26
LINC00538-201ENST00000626109 PSMD14O00487 310 aa13.42□□□□□ -0.26
LINC00538-201ENST00000626109 IDH1O75874 414 aaKnown RBP13.42□□□□□ -0.26
LINC00538-201ENST00000626109 FGAP02671 866 aa13.42□□□□□ -0.26
LINC00538-201ENST00000626109 MAN1A1P33908 653 aa13.42□□□□□ -0.26
LINC00538-201ENST00000626109 NUBP1P53384 320 aa13.42□□□□□ -0.26
LINC00538-201ENST00000626109 LRRFIP1Q32MZ4 808 aaKnown RBP13.42□□□□□ -0.26
LINC00538-201ENST00000626109 BANK1Q8NDB2 785 aa13.42□□□□□ -0.26
LINC00538-201ENST00000626109 ARPC5LQ9BPX5 153 aa13.42□□□□□ -0.26
LINC00538-201ENST00000626109 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.42□□□□□ -0.26
LINC00538-201ENST00000626109 RAI14Q9P0K7 980 aa13.42□□□□□ -0.26
LINC00538-201ENST00000626109 SCN9AQ15858 1988 aa13.42□□□□□ -0.26
LINC00538-201ENST00000626109 SGSM2O43147 1006 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 LDHBP07195 334 aaKnown RBP13.41□□□□□ -0.26
LINC00538-201ENST00000626109 VIL1P09327 827 aaKnown RBP13.41□□□□□ -0.26
LINC00538-201ENST00000626109 PDGFRBP09619 1106 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 MAP3K12Q12852 859 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 SYCP2LQ5T4T6 812 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 PPP1R18Q6NYC8 613 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 RSBN1LQ6PCB5 846 aaPredicted RBP13.41□□□□□ -0.26
LINC00538-201ENST00000626109 LRSAM1Q6UWE0 723 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 PAF1Q8N7H5 531 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 SNRNP27Q8WVK2 155 aaKnown RBP13.41□□□□□ -0.26
LINC00538-201ENST00000626109 MFRPQ9BY79 579 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 PALD1Q9ULE6 856 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 PSME4Q14997 1843 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 ZNF541Q9H0D2 1346 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 MSNP26038 577 aaKnown RBP13.41□□□□□ -0.26
LINC00538-201ENST00000626109 POU5F1BQ06416 359 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 HSP90AA2PQ14568 343 aaPredicted RBP13.41□□□□□ -0.26
LINC00538-201ENST00000626109 ZSCAN25Q6NSZ9 544 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 ZSCAN30Q86W11 494 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 DZIP1Q86YF9 867 aaKnown RBP13.41□□□□□ -0.26
LINC00538-201ENST00000626109 GPT2Q8TD30 523 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 MXD3Q9BW11 206 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 GJA3Q9Y6H8 435 aa13.41□□□□□ -0.26
LINC00538-201ENST00000626109 RAD50Q92878 1312 aa13.4□□□□□ -0.26
LINC00538-201ENST00000626109 RFX7Q2KHR2 1363 aa13.4□□□□□ -0.26
LINC00538-201ENST00000626109 BICDL2A1A5D9 508 aa13.4□□□□□ -0.26
LINC00538-201ENST00000626109 SCAMP3O14828 347 aaKnown RBP13.4□□□□□ -0.26
LINC00538-201ENST00000626109 CBFA2T2O43439 604 aa13.4□□□□□ -0.26
LINC00538-201ENST00000626109 PRDX5P30044 214 aa13.4□□□□□ -0.26
LINC00538-201ENST00000626109 TNNI2P48788 182 aa13.4□□□□□ -0.26
LINC00538-201ENST00000626109 AMPD3Q01432 767 aa13.4□□□□□ -0.26
LINC00538-201ENST00000626109 LONRF1Q17RB8 773 aa13.4□□□□□ -0.26
LINC00538-201ENST00000626109 WDR75Q8IWA0 830 aaKnown RBP13.4□□□□□ -0.26
LINC00538-201ENST00000626109 CERS5Q8N5B7 392 aa13.4□□□□□ -0.26
LINC00538-201ENST00000626109 CHST12Q9NRB3 414 aa13.4□□□□□ -0.26
LINC00538-201ENST00000626109 SYNPO2Q9UMS6 1093 aa13.4□□□□□ -0.26
LINC00538-201ENST00000626109 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.4□□□□□ -0.26
LINC00538-201ENST00000626109 MAST3O60307 1309 aa13.4□□□□□ -0.26
LINC00538-201ENST00000626109 RPS12P25398 132 aaKnown RBP13.39□□□□□ -0.27
LINC00538-201ENST00000626109 C1QTNF12Q5T7M4 302 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 AGBL3Q8NEM8 1001 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 IER2Q9BTL4 223 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 PRDM4Q9UKN5 801 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 ZBTB12Q9Y330 459 aaPredicted RBP13.39□□□□□ -0.27
LINC00538-201ENST00000626109 SRCAPQ6ZRS2 3230 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 ZNF646O15015 1829 aaPredicted RBP13.39□□□□□ -0.27
LINC00538-201ENST00000626109 DOCK2Q92608 1830 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 F8W031 263 aaPredicted RBP13.39□□□□□ -0.27
LINC00538-201ENST00000626109 HIP1O00291 1037 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 DNAJC6O75061 913 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 ZFYP08048 801 aaPredicted RBP13.39□□□□□ -0.27
LINC00538-201ENST00000626109 DPY19L2Q6NUT2 758 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 KIAA0825Q8IV33 1275 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 GPC2Q8N158 579 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 SLC39A13Q96H72 371 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 IFT122Q9HBG6 1241 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 DIAPH3Q9NSV4 1193 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 ATP6V1DQ9Y5K8 247 aa13.39□□□□□ -0.27
LINC00538-201ENST00000626109 MAST2Q6P0Q8 1798 aa13.38□□□□□ -0.27
LINC00538-201ENST00000626109 RRM1P23921 792 aa13.38□□□□□ -0.27
LINC00538-201ENST00000626109 GSTO1P78417 241 aa13.38□□□□□ -0.27
LINC00538-201ENST00000626109 MECOMQ03112 1051 aa13.38□□□□□ -0.27
LINC00538-201ENST00000626109 GRIK5Q16478 980 aa13.38□□□□□ -0.27
LINC00538-201ENST00000626109 SLC9C2Q5TAH2 1124 aa13.38□□□□□ -0.27
LINC00538-201ENST00000626109 NAA16Q6N069 864 aaPredicted RBP13.38□□□□□ -0.27
LINC00538-201ENST00000626109 SLF2Q8IX21 1173 aa13.38□□□□□ -0.27
LINC00538-201ENST00000626109 MAGEB6Q8N7X4 407 aa13.38□□□□□ -0.27
LINC00538-201ENST00000626109 UPF3BQ9BZI7 483 aaKnown RBP13.38□□□□□ -0.27
LINC00538-201ENST00000626109 CASS4Q9NQ75 786 aa13.38□□□□□ -0.27
LINC00538-201ENST00000626109 TFIP11Q9UBB9 837 aaKnown RBP13.38□□□□□ -0.27
LINC00538-201ENST00000626109 HDAC9Q9UKV0 1011 aa13.38□□□□□ -0.27
LINC00538-201ENST00000626109 LIMCH1Q9UPQ0 1083 aa13.38□□□□□ -0.27
LINC00538-201ENST00000626109 RNF113AO15541 343 aaKnown RBP13.37□□□□□ -0.27
LINC00538-201ENST00000626109 FOSP01100 380 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms