RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 PPEF1O14829 653 aaPredicted RBP10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 PLEKHA8P1O95397 391 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 DPCR1Q3MIW9 517 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 OGFOD1Q8N543 542 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 ALS2CR12Q96Q35 445 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 ISCA1Q9BUE6 129 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 NFE2L3Q9Y4A8 694 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 GJA3Q9Y6H8 435 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 PAK1Q13153 545 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 MAEAQ7L5Y9 396 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 ERMNQ8TAM6 284 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 PRM3Q9NNZ6 103 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 RTEL1Q9NZ71 1219 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 USP17L3A6NCW0 530 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 USP17L4A6NCW7 530 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 RHOXF2BP0C7M4 288 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 USP17L1Q7RTZ2 530 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 CABP7Q86V35 215 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 RHOXF2Q9BQY4 288 aa10.07□□□□□ -0.8
PDLIM5-222ENST00000615540 PRPF4BQ13523 1007 aaKnown RBP10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 CALCRLQ16602 461 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 DCAF17Q5H9S7 520 aaPredicted RBP10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 KRBA2Q6ZNG9 492 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 PNMA1Q8ND90 353 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 FBXO18Q8NFZ0 1043 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 BICD1Q96G01 975 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 NOC4LQ9BVI4 516 aaKnown RBP10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 QTRT2Q9H974 415 aaKnown RBP10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 TMEM110-MUSTN1A8MSY1 372 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 SORBS3O60504 671 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 IGSF3O75054 1194 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 SLU7O95391 586 aaKnown RBP10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 ZHX1Q9UKY1 873 aaPredicted RBP10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 GOLGA6L9A6NEM1 432 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 BLIDQ8IZY5 108 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 KDM6AO15550 1401 aaPredicted RBP10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 GOLGA6L10A6NI86 522 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 KIF28PB7ZC32 967 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 TCP10L2B9ZVM9 353 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 H0YIN7 160 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 CDC27P30260 824 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 SETQ01105 290 aaPredicted RBP10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 KIAA0825Q8IV33 1275 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 SH3RF3Q8TEJ3 882 aaPredicted RBP10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 LRRC27Q9C0I9 530 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 PCDHB6Q9Y5E3 794 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 C3P01024 1663 aa10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 USP42Q9H9J4 1324 aaKnown RBP10.06□□□□□ -0.8
PDLIM5-222ENST00000615540 CTAGE9A4FU28 777 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 AKR1B10O60218 316 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 SCG2P13521 617 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 CELF1Q92879 486 aaKnown RBP10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 HOMER2Q9NSB8 354 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 FANCLQ9NW38 375 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 CMA1P23946 247 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 NONOQ15233 471 aaKnown RBP eCLIP10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 NELFCDQ8IXH7 590 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 SCLT1Q96NL6 688 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 FBXO3Q9UK99 471 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 MYO6Q9UM54 1294 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 FAM13AO94988 1023 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 SNAP25P60880 206 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 UBE4AQ14139 1066 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 STRBPQ96SI9 672 aaKnown RBP10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 DESI2Q9BSY9 194 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 BCCIPQ9P287 314 aaKnown RBP eCLIP10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 REREQ9P2R6 1566 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 BICDL2A1A5D9 508 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 TRERF1Q96PN7 1200 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 DBNDD1Q9H9R9 158 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 DDAH1O94760 285 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 KIF20AO95235 890 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 MMP1P03956 469 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 SERPINB2P05120 415 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 PRKG1Q13976 671 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 LINC00301Q8NCQ3 95 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 SNX29Q8TEQ0 813 aa10.05□□□□□ -0.8
PDLIM5-222ENST00000615540 ELF2Q15723 593 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 KCTD1Q719H9 257 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 LRRC8AQ8IWT6 810 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 EEF2KMTQ96G04 330 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 XDHP47989 1333 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 PLCD1P51178 756 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 PTGDRQ13258 359 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 FNBP4Q8N3X1 1017 aaPredicted RBP10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 PEAK1Q9H792 1746 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 CDC25AP30304 524 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 RFX5P48382 616 aaPredicted RBP10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 C2CD5Q86YS7 1000 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 MB21D2Q8IYB1 491 aaPredicted RBP10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 OXER1Q8TDS5 423 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 BSDC1Q9NW68 430 aaPredicted RBP10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 CWC15Q9P013 229 aaKnown RBP10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 SLC16A2P36021 539 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 RABL6Q3YEC7 729 aaPredicted RBP10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 CSGALNACT2Q8N6G5 542 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 CRACR2AQ9BSW2 395 aa10.04□□□□□ -0.8
PDLIM5-222ENST00000615540 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.04□□□□□ -0.82e-6■■■■■ 86.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms