RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 GPRC5AQ8NFJ5 357 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 PXYLP1Q8TE99 480 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 DDRGK1Q96HY6 314 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 GJD2Q9UKL4 321 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 TTC41PQ6P2S7 1318 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 ERC2O15083 957 aa18.12■□□□□ 0.49
LIG1-215ENST00000597901 CDK8P49336 464 aa18.12■□□□□ 0.49
LIG1-215ENST00000597901 UBXN2AP68543 259 aa18.12■□□□□ 0.49
LIG1-215ENST00000597901 Q3C1V9 767 aa18.12■□□□□ 0.49
LIG1-215ENST00000597901 CTR9Q6PD62 1173 aa18.12■□□□□ 0.49
LIG1-215ENST00000597901 POTEEQ6S8J3 1075 aa18.12■□□□□ 0.49
LIG1-215ENST00000597901 CATSPERGQ6ZRH7 1159 aa18.12■□□□□ 0.49
LIG1-215ENST00000597901 AMOTL1Q8IY63 956 aa18.12■□□□□ 0.49
LIG1-215ENST00000597901 PI4K2BQ8TCG2 481 aa18.12■□□□□ 0.49
LIG1-215ENST00000597901 OSBP2Q969R2 916 aa18.12■□□□□ 0.49
LIG1-215ENST00000597901 TXNRD2Q9NNW7 524 aa18.12■□□□□ 0.49
LIG1-215ENST00000597901 ZSWIM8A7E2V4 1837 aa18.12■□□□□ 0.49
LIG1-215ENST00000597901 CDK5RAP2Q96SN8 1893 aa18.12■□□□□ 0.49
LIG1-215ENST00000597901 A0A1W2PRG0 241 aa18.11■□□□□ 0.49
LIG1-215ENST00000597901 GLRX3O76003 335 aaKnown RBP18.11■□□□□ 0.49
LIG1-215ENST00000597901 ZFYP08048 801 aaPredicted RBP18.11■□□□□ 0.49
LIG1-215ENST00000597901 CCL5P13501 91 aa18.11■□□□□ 0.49
LIG1-215ENST00000597901 ELNP15502 786 aa18.11■□□□□ 0.49
LIG1-215ENST00000597901 HDAC1Q13547 482 aaPredicted RBP18.11■□□□□ 0.49
LIG1-215ENST00000597901 TMEM179Q6ZVK1 233 aa18.11■□□□□ 0.49
LIG1-215ENST00000597901 APPBP2Q92624 585 aa18.11■□□□□ 0.49
LIG1-215ENST00000597901 CCDC17Q96LX7 622 aa18.11■□□□□ 0.49
LIG1-215ENST00000597901 FOCADQ5VW36 1801 aa18.11■□□□□ 0.49
LIG1-215ENST00000597901 GSG1L2A8MUP6 293 aa18.1■□□□□ 0.49
LIG1-215ENST00000597901 AKR1B1P15121 316 aa18.1■□□□□ 0.49
LIG1-215ENST00000597901 SIAH1Q8IUQ4 282 aa18.1■□□□□ 0.49
LIG1-215ENST00000597901 GTF3C2Q8WUA4 911 aaPredicted RBP18.1■□□□□ 0.49
LIG1-215ENST00000597901 GCC1Q96CN9 775 aa18.1■□□□□ 0.49
LIG1-215ENST00000597901 RNF208Q9H0X6 261 aa18.1■□□□□ 0.49
LIG1-215ENST00000597901 ZBTB47Q9UFB7 747 aaPredicted RBP18.1■□□□□ 0.49
LIG1-215ENST00000597901 HTTP42858 3142 aa18.09■□□□□ 0.49
LIG1-215ENST00000597901 GJB1P08034 283 aa18.09■□□□□ 0.49
LIG1-215ENST00000597901 VCAM1P19320 739 aa18.09■□□□□ 0.49
LIG1-215ENST00000597901 MX1P20591 662 aa18.09■□□□□ 0.49
LIG1-215ENST00000597901 AAMPQ13685 434 aa18.09■□□□□ 0.49
LIG1-215ENST00000597901 LRRFIP1Q32MZ4 808 aaKnown RBP18.09■□□□□ 0.49
LIG1-215ENST00000597901 SBK1Q52WX2 424 aa18.09■□□□□ 0.49
LIG1-215ENST00000597901 GIMAP6Q6P9H5 292 aa18.09■□□□□ 0.49
LIG1-215ENST00000597901 C16orf86Q6ZW13 317 aa18.09■□□□□ 0.49
LIG1-215ENST00000597901 PAGR1Q9BTK6 254 aa18.09■□□□□ 0.49
LIG1-215ENST00000597901 PTPRFP10586 1907 aa18.09■□□□□ 0.49
LIG1-215ENST00000597901 MYH1P12882 1939 aa18.09■□□□□ 0.49
LIG1-215ENST00000597901 ERVK-9P63128 1117 aa18.08■□□□□ 0.48
LIG1-215ENST00000597901 ERVK-24P63145 666 aa18.08■□□□□ 0.48
LIG1-215ENST00000597901 UNC93B1Q9H1C4 597 aa18.08■□□□□ 0.48
LIG1-215ENST00000597901 RPAP3Q9H6T3 665 aaPredicted RBP18.08■□□□□ 0.48
LIG1-215ENST00000597901 RABGAP1Q9Y3P9 1069 aa18.08■□□□□ 0.48
LIG1-215ENST00000597901 PATL2C9JE40 543 aaKnown RBP18.07■□□□□ 0.48
LIG1-215ENST00000597901 M0R2C6 588 aa18.07■□□□□ 0.48
LIG1-215ENST00000597901 GPAA1O43292 621 aa18.07■□□□□ 0.48
LIG1-215ENST00000597901 INHAP05111 366 aa18.07■□□□□ 0.48
LIG1-215ENST00000597901 GJA8P48165 433 aa18.07■□□□□ 0.48
LIG1-215ENST00000597901 CCAR1Q8IX12 1150 aaKnown RBP18.07■□□□□ 0.48
LIG1-215ENST00000597901 NKX2-3Q8TAU0 364 aa18.07■□□□□ 0.48
LIG1-215ENST00000597901 SEC62Q99442 399 aaKnown RBP18.07■□□□□ 0.48
LIG1-215ENST00000597901 ARPP21Q9UBL0 812 aaPredicted RBP18.07■□□□□ 0.48
LIG1-215ENST00000597901 ATAD5Q96QE3 1844 aa18.07■□□□□ 0.48
LIG1-215ENST00000597901 SALL3Q9BXA9 1300 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 MINDY4BA8MYZ0 360 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 CNMDO75829 334 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 APPP05067 770 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 GNAT2P19087 354 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 MAPK4P31152 587 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 COG2Q14746 738 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 KIAA1755Q5JYT7 1200 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 FSD1Q9BTV5 496 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 PORCNQ9H237 461 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 ARHGEF10LQ9HCE6 1279 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 HOXC10Q9NYD6 342 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 STAP2Q9UGK3 403 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 TMX2Q9Y320 296 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 LOC285556D6RIA3 1793 aa18.06■□□□□ 0.48
LIG1-215ENST00000597901 SGPL1O95470 568 aa18.05■□□□□ 0.48
LIG1-215ENST00000597901 CYP2B6P20813 491 aa18.05■□□□□ 0.48
LIG1-215ENST00000597901 LBX2Q6XYB7 198 aa18.05■□□□□ 0.48
LIG1-215ENST00000597901 CLEC10AQ8IUN9 316 aa18.05■□□□□ 0.48
LIG1-215ENST00000597901 STK11IPQ8N1F8 1099 aa18.05■□□□□ 0.48
LIG1-215ENST00000597901 SHISA4Q96DD7 197 aa18.05■□□□□ 0.48
LIG1-215ENST00000597901 NUDT12Q9BQG2 462 aa18.05■□□□□ 0.48
LIG1-215ENST00000597901 RWDD1Q9H446 243 aaPredicted RBP18.05■□□□□ 0.48
LIG1-215ENST00000597901 KANSL2Q9H9L4 492 aa18.05■□□□□ 0.48
LIG1-215ENST00000597901 EEF2P13639 858 aaKnown RBP18.04■□□□□ 0.48
LIG1-215ENST00000597901 PDE1AP54750 535 aa18.04■□□□□ 0.48
LIG1-215ENST00000597901 CCNA1P78396 465 aa18.04■□□□□ 0.48
LIG1-215ENST00000597901 ICA1Q05084 483 aa18.04■□□□□ 0.48
LIG1-215ENST00000597901 ZMYM1Q5SVZ6 1142 aa18.04■□□□□ 0.48
LIG1-215ENST00000597901 GPR142Q7Z601 462 aa18.04■□□□□ 0.48
LIG1-215ENST00000597901 PLEKHH3Q7Z736 793 aa18.04■□□□□ 0.48
LIG1-215ENST00000597901 IFNL3Q8IZI9 196 aa18.04■□□□□ 0.48
LIG1-215ENST00000597901 U2AF1L4Q8WU68 220 aaKnown RBP18.04■□□□□ 0.48
LIG1-215ENST00000597901 USP6NLQ92738 828 aa18.04■□□□□ 0.48
LIG1-215ENST00000597901 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.04■□□□□ 0.48
LIG1-215ENST00000597901 MKNK2Q9HBH9 465 aa18.04■□□□□ 0.48
LIG1-215ENST00000597901 BTBD7Q9P203 1132 aa18.04■□□□□ 0.48
LIG1-215ENST00000597901 PDE4DIPQ5VU43 2346 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms