RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SMARCC1Q92922 1105 aaPredicted RBP26.04■■□□□ 1.76
VPS53-211ENST00000571805 RBM28Q9NW13 759 aaKnown RBP26.04■■□□□ 1.76
VPS53-211ENST00000571805 A0A087X0B3 334 aa26.04■■□□□ 1.76
VPS53-211ENST00000571805 ETF1P62495 437 aaKnown RBP26.04■■□□□ 1.76
VPS53-211ENST00000571805 FBXO33Q7Z6M2 555 aa26.04■■□□□ 1.76
VPS53-211ENST00000571805 CELF1Q92879 486 aaKnown RBP26.04■■□□□ 1.76
VPS53-211ENST00000571805 SPATA31A5Q5VU36 1347 aa26.04■■□□□ 1.76
VPS53-211ENST00000571805 SPATA31A7Q8IWB4 1347 aa26.04■■□□□ 1.76
VPS53-211ENST00000571805 TRIM65Q6PJ69 517 aa26.03■■□□□ 1.76
VPS53-211ENST00000571805 IQCA1Q86XH1 822 aa26.03■■□□□ 1.76
VPS53-211ENST00000571805 REXO1L1PQ8IX06 675 aa26.03■■□□□ 1.76
VPS53-211ENST00000571805 OGFRQ9NZT2 677 aa26.03■■□□□ 1.76
VPS53-211ENST00000571805 TRMT44Q8IYL2 757 aaKnown RBP26.03■■□□□ 1.76
VPS53-211ENST00000571805 TNFRSF25Q93038 417 aa26.03■■□□□ 1.76
VPS53-211ENST00000571805 EPSTI1Q96J88 318 aa26.03■■□□□ 1.76
VPS53-211ENST00000571805 CALM1P0DP23 149 aa26.02■■□□□ 1.76
VPS53-211ENST00000571805 CALM2P0DP24 149 aa26.02■■□□□ 1.76
VPS53-211ENST00000571805 CALM3P0DP25 149 aa26.02■■□□□ 1.76
VPS53-211ENST00000571805 NPY5RQ15761 445 aa26.02■■□□□ 1.76
VPS53-211ENST00000571805 KMT5BQ4FZB7 885 aa26.02■■□□□ 1.76
VPS53-211ENST00000571805 FCHSD1Q86WN1 690 aa26.02■■□□□ 1.76
VPS53-211ENST00000571805 LINC00116Q8NCU8 138 aa26.02■■□□□ 1.76
VPS53-211ENST00000571805 ZNF397Q8NF99 534 aaPredicted RBP26.02■■□□□ 1.76
VPS53-211ENST00000571805 NSUN4Q96CB9 384 aaKnown RBP26.02■■□□□ 1.76
VPS53-211ENST00000571805 DDX52Q9Y2R4 599 aaKnown RBP eCLIP26.02■■□□□ 1.76
VPS53-211ENST00000571805 USP17L12C9JPN9 530 aa26.02■■□□□ 1.76
VPS53-211ENST00000571805 USP17L21D6R901 530 aa26.02■■□□□ 1.76
VPS53-211ENST00000571805 WNT7AO00755 349 aa26.02■■□□□ 1.76
VPS53-211ENST00000571805 ELF2Q15723 593 aa26.02■■□□□ 1.76
VPS53-211ENST00000571805 SLC10A5Q5PT55 438 aa26.02■■□□□ 1.76
VPS53-211ENST00000571805 SH3RF1Q7Z6J0 888 aa26.02■■□□□ 1.76
VPS53-211ENST00000571805 DDX41Q9UJV9 622 aaKnown RBP26.02■■□□□ 1.76
VPS53-211ENST00000571805 ERCC5P28715 1186 aaPredicted RBP26.01■■□□□ 1.75
VPS53-211ENST00000571805 PLCD1P51178 756 aa26.01■■□□□ 1.75
VPS53-211ENST00000571805 EVX2Q03828 476 aa26.01■■□□□ 1.75
VPS53-211ENST00000571805 TMTC3Q6ZXV5 915 aa26.01■■□□□ 1.75
VPS53-211ENST00000571805 PHLPP2Q6ZVD8 1323 aa26■■□□□ 1.75
VPS53-211ENST00000571805 DDAH1O94760 285 aa26■■□□□ 1.75
VPS53-211ENST00000571805 CDK11BP21127 795 aaKnown RBP26■■□□□ 1.75
VPS53-211ENST00000571805 KLRK1P26718 216 aa26■■□□□ 1.75
VPS53-211ENST00000571805 HOMER1Q86YM7 354 aa26■■□□□ 1.75
VPS53-211ENST00000571805 DHX58Q96C10 678 aa26■■□□□ 1.75
VPS53-211ENST00000571805 SAMSN1Q9NSI8 373 aaKnown RBP26■■□□□ 1.75
VPS53-211ENST00000571805 SEMA3EO15041 775 aa26■■□□□ 1.75
VPS53-211ENST00000571805 ARHGAP6O43182 974 aa26■■□□□ 1.75
VPS53-211ENST00000571805 SLFN14P0C7P3 912 aa26■■□□□ 1.75
VPS53-211ENST00000571805 NUTM2AQ8IVF1 878 aaPredicted RBP26■■□□□ 1.75
VPS53-211ENST00000571805 ZNF831Q5JPB2 1677 aa26■■□□□ 1.75
VPS53-211ENST00000571805 NOM1Q5C9Z4 860 aaKnown RBP25.99■■□□□ 1.75
VPS53-211ENST00000571805 SPECC1LQ69YQ0 1117 aa25.99■■□□□ 1.75
VPS53-211ENST00000571805 ORC4O43929 436 aa25.99■■□□□ 1.75
VPS53-211ENST00000571805 MECOMQ03112 1051 aa25.99■■□□□ 1.75
VPS53-211ENST00000571805 BARGINQ6ZT62 677 aa25.99■■□□□ 1.75
VPS53-211ENST00000571805 TC2NQ8N9U0 490 aa25.99■■□□□ 1.75
VPS53-211ENST00000571805 FERMT2Q96AC1 680 aa25.99■■□□□ 1.75
VPS53-211ENST00000571805 MYH13Q9UKX3 1938 aa25.99■■□□□ 1.75
VPS53-211ENST00000571805 CNTNAP5Q8WYK1 1306 aa25.98■■□□□ 1.75
VPS53-211ENST00000571805 BMP15O95972 392 aa25.98■■□□□ 1.75
VPS53-211ENST00000571805 LRRN4CLQ8ND94 238 aa25.98■■□□□ 1.75
VPS53-211ENST00000571805 SYMPKQ92797 1274 aaKnown RBP25.98■■□□□ 1.75
VPS53-211ENST00000571805 PAGE5Q96GU1 130 aa25.98■■□□□ 1.75
VPS53-211ENST00000571805 DNAI1Q9UI46 699 aa25.98■■□□□ 1.75
VPS53-211ENST00000571805 FANCGO15287 622 aa25.98■■□□□ 1.75
VPS53-211ENST00000571805 NR1I3Q14994 352 aa25.98■■□□□ 1.75
VPS53-211ENST00000571805 CT47A1Q5JQC4 288 aaPredicted RBP25.98■■□□□ 1.75
VPS53-211ENST00000571805 SRBD1Q8N5C6 995 aaKnown RBP25.98■■□□□ 1.75
VPS53-211ENST00000571805 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP25.98■■□□□ 1.754e-6■■■□□ 17.1
VPS53-211ENST00000571805 PDS5AQ29RF7 1337 aaKnown RBP25.97■■□□□ 1.75
VPS53-211ENST00000571805 TBC1D9BQ66K14 1250 aa25.97■■□□□ 1.75
VPS53-211ENST00000571805 FBXO38Q6PIJ6 1188 aa25.97■■□□□ 1.75
VPS53-211ENST00000571805 BICDL1Q6ZP65 573 aa25.97■■□□□ 1.75
VPS53-211ENST00000571805 BAG1Q99933 345 aaPredicted RBP25.97■■□□□ 1.75
VPS53-211ENST00000571805 DCP1AQ9NPI6 582 aaPredicted RBP25.97■■□□□ 1.75
VPS53-211ENST00000571805 PRDM4Q9UKN5 801 aa25.97■■□□□ 1.75
VPS53-211ENST00000571805 ZSCAN12O43309 604 aa25.97■■□□□ 1.75
VPS53-211ENST00000571805 ZNF174Q15697 407 aa25.97■■□□□ 1.75
VPS53-211ENST00000571805 PPP2R2CQ9Y2T4 447 aa25.97■■□□□ 1.75
VPS53-211ENST00000571805 STX10O60499 249 aa25.96■■□□□ 1.75
VPS53-211ENST00000571805 NMT2O60551 498 aa25.96■■□□□ 1.75
VPS53-211ENST00000571805 DMTNQ08495 405 aa25.96■■□□□ 1.75
VPS53-211ENST00000571805 BRMS1Q9HCU9 246 aa25.96■■□□□ 1.75
VPS53-211ENST00000571805 A0A1B0GTH6 734 aa25.96■■□□□ 1.75
VPS53-211ENST00000571805 CD44P16070 742 aaKnown RBP25.96■■□□□ 1.75
VPS53-211ENST00000571805 AFMP43652 599 aa25.96■■□□□ 1.75
VPS53-211ENST00000571805 RPS8P62241 208 aaKnown RBP25.96■■□□□ 1.75
VPS53-211ENST00000571805 CUL4BQ13620 913 aa25.96■■□□□ 1.75
VPS53-211ENST00000571805 APTXQ7Z2E3 356 aaKnown RBP25.96■■□□□ 1.75
VPS53-211ENST00000571805 LAMB1P07942 1786 aa25.96■■□□□ 1.75
VPS53-211ENST00000571805 VWA3AA6NCI4 1184 aa25.95■■□□□ 1.74
VPS53-211ENST00000571805 DPYDQ12882 1025 aa25.95■■□□□ 1.74
VPS53-211ENST00000571805 TTC38Q5R3I4 469 aa25.95■■□□□ 1.74
VPS53-211ENST00000571805 CCDC34Q96HJ3 373 aa25.95■■□□□ 1.74
VPS53-211ENST00000571805 RGL2O15211 777 aa25.95■■□□□ 1.74
VPS53-211ENST00000571805 GTF2E1P29083 439 aaPredicted RBP25.95■■□□□ 1.74
VPS53-211ENST00000571805 CASP1P29466 404 aa25.95■■□□□ 1.74
VPS53-211ENST00000571805 ADKP55263 362 aaKnown RBP25.95■■□□□ 1.74
VPS53-211ENST00000571805 KCNQ4P56696 695 aa25.95■■□□□ 1.74
VPS53-211ENST00000571805 ATP2C1P98194 919 aaPredicted RBP25.95■■□□□ 1.74
VPS53-211ENST00000571805 ERCC6LQ2NKX8 1250 aa25.95■■□□□ 1.74
VPS53-211ENST00000571805 SMIM5Q71RC9 77 aa25.95■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms