RNA–Protein interactions for RNA: ENST00000557341.5

SNX6-210, Transcript of sorting nexin 6, humanhuman

TSL 5

Gene SNX6, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-210ENST00000557341 SOCS4Q8WXH5 440 aa17.12■□□□□ 0.33
SNX6-210ENST00000557341 KIAA1683Q9H0B3 1180 aa17.12■□□□□ 0.33
SNX6-210ENST00000557341 TXNRD2Q9NNW7 524 aa17.12■□□□□ 0.33
SNX6-210ENST00000557341 DCP1AQ9NPI6 582 aaPredicted RBP17.12■□□□□ 0.33
SNX6-210ENST00000557341 PAK6Q9NQU5 681 aaPredicted RBP17.12■□□□□ 0.33
SNX6-210ENST00000557341 FARP2O94887 1054 aaPredicted RBP17.11■□□□□ 0.33
SNX6-210ENST00000557341 MBD4O95243 580 aa17.11■□□□□ 0.33
SNX6-210ENST00000557341 ERVK-9P63128 1117 aa17.11■□□□□ 0.33
SNX6-210ENST00000557341 ERVK-24P63145 666 aa17.11■□□□□ 0.33
SNX6-210ENST00000557341 UBE2Q1Q7Z7E8 422 aa17.11■□□□□ 0.33
SNX6-210ENST00000557341 PAGR1Q9BTK6 254 aa17.11■□□□□ 0.33
SNX6-210ENST00000557341 HTATIP2Q9BUP3 242 aa17.11■□□□□ 0.33
SNX6-210ENST00000557341 ARMT1Q9H993 441 aa17.11■□□□□ 0.33
SNX6-210ENST00000557341 USP17L15C9J2P7 530 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 USP17L13C9JLJ4 530 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 USP17L11C9JVI0 530 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 USP17L18D6R9N7 530 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 USP17L22D6RA61 530 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 USP17L17D6RBQ6 530 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 USP17L19D6RCP7 530 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 USP17L20D6RJB6 530 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 VCAM1P19320 739 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 MAPK4P31152 587 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 USP17L24Q0WX57 530 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 CCAR1Q8IX12 1150 aaKnown RBP17.1■□□□□ 0.33
SNX6-210ENST00000557341 DEFB118Q96PH6 123 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 NUDT12Q9BQG2 462 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.1■□□□□ 0.338e-7■□□□□ 9.9
SNX6-210ENST00000557341 ATP8A2Q9NTI2 1148 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 RBPJLQ9UBG7 517 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 GJD2Q9UKL4 321 aa17.1■□□□□ 0.33
SNX6-210ENST00000557341 ZNFX1Q9P2E3 1918 aaKnown RBP17.09■□□□□ 0.33
SNX6-210ENST00000557341 MPHOSPH10O00566 681 aaKnown RBP17.09■□□□□ 0.33
SNX6-210ENST00000557341 SMARCA5O60264 1052 aaPredicted RBP17.09■□□□□ 0.33
SNX6-210ENST00000557341 PEX10O60683 326 aa17.09■□□□□ 0.33
SNX6-210ENST00000557341 GUCY1A2P33402 732 aa17.09■□□□□ 0.33
SNX6-210ENST00000557341 EVX2Q03828 476 aa17.09■□□□□ 0.33
SNX6-210ENST00000557341 HABP4Q5JVS0 413 aaKnown RBP17.09■□□□□ 0.33
SNX6-210ENST00000557341 ZSCAN25Q6NSZ9 544 aa17.09■□□□□ 0.33
SNX6-210ENST00000557341 AMOTL1Q8IY63 956 aa17.09■□□□□ 0.33
SNX6-210ENST00000557341 ACER1Q8TDN7 264 aa17.09■□□□□ 0.33
SNX6-210ENST00000557341 TRIB2Q92519 343 aa17.09■□□□□ 0.33
SNX6-210ENST00000557341 SWAP70Q9UH65 585 aa17.09■□□□□ 0.33
SNX6-210ENST00000557341 PLXNA1Q9UIW2 1896 aa17.09■□□□□ 0.33
SNX6-210ENST00000557341 CYP2D6P10635 497 aa17.08■□□□□ 0.32
SNX6-210ENST00000557341 SEPT2Q15019 361 aa17.08■□□□□ 0.32
SNX6-210ENST00000557341 UBE3CQ15386 1083 aa17.08■□□□□ 0.32
SNX6-210ENST00000557341 SLFNL1Q499Z3 407 aa17.08■□□□□ 0.32
SNX6-210ENST00000557341 TMEM179Q6ZVK1 233 aa17.08■□□□□ 0.32
SNX6-210ENST00000557341 DPF3Q92784 378 aa17.08■□□□□ 0.32
SNX6-210ENST00000557341 DDRGK1Q96HY6 314 aa17.08■□□□□ 0.32
SNX6-210ENST00000557341 GPATCH3Q96I76 525 aa17.08■□□□□ 0.32
SNX6-210ENST00000557341 CRISPLD2Q9H0B8 497 aa17.08■□□□□ 0.32
SNX6-210ENST00000557341 PORCNQ9H237 461 aa17.08■□□□□ 0.32
SNX6-210ENST00000557341 CWC22Q9HCG8 908 aaKnown RBP17.08■□□□□ 0.32
SNX6-210ENST00000557341 ECHDC1Q9NTX5 307 aa17.08■□□□□ 0.32
SNX6-210ENST00000557341 RABGAP1Q9Y3P9 1069 aa17.08■□□□□ 0.32
SNX6-210ENST00000557341 RANBP2P49792 3224 aaKnown RBP17.08■□□□□ 0.32
SNX6-210ENST00000557341 RPTORQ8N122 1335 aa17.07■□□□□ 0.32
SNX6-210ENST00000557341 H0YGN5 161 aa17.07■□□□□ 0.32
SNX6-210ENST00000557341 TFRCP02786 760 aaKnown RBP17.07■□□□□ 0.32
SNX6-210ENST00000557341 XRCC5P13010 732 aaKnown RBP17.07■□□□□ 0.32
SNX6-210ENST00000557341 CYP2B6P20813 491 aa17.07■□□□□ 0.32
SNX6-210ENST00000557341 CCNA1P78396 465 aa17.07■□□□□ 0.32
SNX6-210ENST00000557341 Q3C1V9 767 aa17.07■□□□□ 0.32
SNX6-210ENST00000557341 CATSPERGQ6ZRH7 1159 aa17.07■□□□□ 0.32
SNX6-210ENST00000557341 GPR142Q7Z601 462 aa17.07■□□□□ 0.32
SNX6-210ENST00000557341 SLC44A5Q8NCS7 719 aa17.07■□□□□ 0.32
SNX6-210ENST00000557341 RPAP3Q9H6T3 665 aaPredicted RBP17.07■□□□□ 0.32
SNX6-210ENST00000557341 HMX1Q9NP08 348 aaPredicted RBP17.07■□□□□ 0.32
SNX6-210ENST00000557341 TRIOBPQ9H2D6 2365 aa17.06■□□□□ 0.32
SNX6-210ENST00000557341 PRKAB2O43741 272 aa17.06■□□□□ 0.32
SNX6-210ENST00000557341 RGS2P41220 211 aa17.06■□□□□ 0.32
SNX6-210ENST00000557341 POTEEQ6S8J3 1075 aa17.06■□□□□ 0.32
SNX6-210ENST00000557341 LBX2Q6XYB7 198 aa17.06■□□□□ 0.32
SNX6-210ENST00000557341 PLEKHH3Q7Z736 793 aa17.06■□□□□ 0.32
SNX6-210ENST00000557341 TRMT44Q8IYL2 757 aaKnown RBP17.06■□□□□ 0.32
SNX6-210ENST00000557341 APBA2Q99767 749 aa17.06■□□□□ 0.32
SNX6-210ENST00000557341 DCTPP1Q9H773 170 aa17.06■□□□□ 0.32
SNX6-210ENST00000557341 SPDYE16A6NNV3 312 aaPredicted RBP17.05■□□□□ 0.32
SNX6-210ENST00000557341 GLRX3O76003 335 aaKnown RBP17.05■□□□□ 0.32
SNX6-210ENST00000557341 CHGBP05060 677 aa17.05■□□□□ 0.32
SNX6-210ENST00000557341 ZKSCAN1P17029 563 aaPredicted RBP17.05■□□□□ 0.32
SNX6-210ENST00000557341 TRIM32Q13049 653 aa17.05■□□□□ 0.32
SNX6-210ENST00000557341 DYNLL2Q96FJ2 89 aa17.05■□□□□ 0.32
SNX6-210ENST00000557341 ARHGEF10LQ9HCE6 1279 aa17.05■□□□□ 0.32
SNX6-210ENST00000557341 SLC4A4Q9Y6R1 1079 aa17.05■□□□□ 0.32
SNX6-210ENST00000557341 A0A1W2PRG0 241 aa17.04■□□□□ 0.32
SNX6-210ENST00000557341 CNMDO75829 334 aa17.04■□□□□ 0.32
SNX6-210ENST00000557341 PRKAR2AP13861 404 aaKnown RBP17.04■□□□□ 0.32
SNX6-210ENST00000557341 ICA1Q05084 483 aa17.04■□□□□ 0.32
SNX6-210ENST00000557341 MORN1Q5T089 497 aa17.04■□□□□ 0.32
SNX6-210ENST00000557341 MAP3K21Q5TCX8 1036 aa17.04■□□□□ 0.32
SNX6-210ENST00000557341 C12orf60Q5U649 245 aa17.04■□□□□ 0.32
SNX6-210ENST00000557341 ANKLE1Q8NAG6 615 aa17.04■□□□□ 0.32
SNX6-210ENST00000557341 USP6NLQ92738 828 aa17.04■□□□□ 0.32
SNX6-210ENST00000557341 TANGO6Q9C0B7 1094 aa17.04■□□□□ 0.32
SNX6-210ENST00000557341 PUS7LQ9H0K6 701 aaKnown RBP17.04■□□□□ 0.32
SNX6-210ENST00000557341 SH2D4AQ9H788 454 aa17.04■□□□□ 0.32
SNX6-210ENST00000557341 ARPP21Q9UBL0 812 aaPredicted RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms