RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 TXNRD2Q9NNW7 524 aa19.69■□□□□ 0.74
VPS29-207ENST00000549970 ATP8A2Q9NTI2 1148 aa19.69■□□□□ 0.74
VPS29-207ENST00000549970 GPRC5AQ8NFJ5 357 aa19.68■□□□□ 0.74
VPS29-207ENST00000549970 DYNLL2Q96FJ2 89 aa19.68■□□□□ 0.74
VPS29-207ENST00000549970 PAGR1Q9BTK6 254 aa19.68■□□□□ 0.74
VPS29-207ENST00000549970 UNC93B1Q9H1C4 597 aa19.68■□□□□ 0.74
VPS29-207ENST00000549970 MYH8P13535 1937 aa19.67■□□□□ 0.74
VPS29-207ENST00000549970 CYP2D7A0A087X1C5 515 aa19.67■□□□□ 0.74
VPS29-207ENST00000549970 GJB1P08034 283 aa19.67■□□□□ 0.74
VPS29-207ENST00000549970 NKX2-3Q8TAU0 364 aa19.67■□□□□ 0.74
VPS29-207ENST00000549970 KIAA1683Q9H0B3 1180 aa19.67■□□□□ 0.74
VPS29-207ENST00000549970 PUS7LQ9H0K6 701 aaKnown RBP19.67■□□□□ 0.74
VPS29-207ENST00000549970 RBPJLQ9UBG7 517 aa19.67■□□□□ 0.74
VPS29-207ENST00000549970 SWAP70Q9UH65 585 aa19.67■□□□□ 0.74
VPS29-207ENST00000549970 SLC4A4Q9Y6R1 1079 aa19.67■□□□□ 0.74
VPS29-207ENST00000549970 USP17L15C9J2P7 530 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 USP17L13C9JLJ4 530 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 USP17L11C9JVI0 530 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 USP17L18D6R9N7 530 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 USP17L22D6RA61 530 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 USP17L17D6RBQ6 530 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 USP17L19D6RCP7 530 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 USP17L20D6RJB6 530 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 VCAM1P19320 739 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 GJA8P48165 433 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 ERVK-9P63128 1117 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 ERVK-24P63145 666 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 USP17L24Q0WX57 530 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 AMOTL1Q8IY63 956 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 GTF3C2Q8WUA4 911 aaPredicted RBP19.66■□□□□ 0.74
VPS29-207ENST00000549970 DDRGK1Q96HY6 314 aa19.66■□□□□ 0.74
VPS29-207ENST00000549970 USP17L12C9JPN9 530 aa19.65■□□□□ 0.74
VPS29-207ENST00000549970 USP17L21D6R901 530 aa19.65■□□□□ 0.74
VPS29-207ENST00000549970 SMIM22K7EJ46 135 aa19.65■□□□□ 0.74
VPS29-207ENST00000549970 Q3C1V9 767 aa19.65■□□□□ 0.74
VPS29-207ENST00000549970 KBTBD3Q8NAB2 608 aa19.65■□□□□ 0.74
VPS29-207ENST00000549970 U2AF1L4Q8WU68 220 aaKnown RBP19.65■□□□□ 0.74
VPS29-207ENST00000549970 CRBNQ96SW2 442 aa19.65■□□□□ 0.74
VPS29-207ENST00000549970 GJD2Q9UKL4 321 aa19.65■□□□□ 0.74
VPS29-207ENST00000549970 C12orf60Q5U649 245 aa19.64■□□□□ 0.73
VPS29-207ENST00000549970 POTEEQ6S8J3 1075 aa19.64■□□□□ 0.73
VPS29-207ENST00000549970 CATSPERGQ6ZRH7 1159 aa19.64■□□□□ 0.73
VPS29-207ENST00000549970 TMEM179Q6ZVK1 233 aa19.64■□□□□ 0.73
VPS29-207ENST00000549970 CCAR1Q8IX12 1150 aaKnown RBP19.64■□□□□ 0.73
VPS29-207ENST00000549970 PORCNQ9H237 461 aa19.64■□□□□ 0.73
VPS29-207ENST00000549970 RPAP3Q9H6T3 665 aaPredicted RBP19.64■□□□□ 0.73
VPS29-207ENST00000549970 PLXNB2O15031 1838 aa19.64■□□□□ 0.73
VPS29-207ENST00000549970 A0A1W2PRG0 241 aa19.63■□□□□ 0.73
VPS29-207ENST00000549970 AKR1B1P15121 316 aa19.63■□□□□ 0.73
VPS29-207ENST00000549970 CYP2B6P20813 491 aa19.63■□□□□ 0.73
VPS29-207ENST00000549970 MAPK4P31152 587 aa19.63■□□□□ 0.73
VPS29-207ENST00000549970 CDK8P49336 464 aa19.63■□□□□ 0.73
VPS29-207ENST00000549970 CLEC10AQ8IUN9 316 aa19.63■□□□□ 0.73
VPS29-207ENST00000549970 SGPL1O95470 568 aa19.62■□□□□ 0.73
VPS29-207ENST00000549970 HMGCRP04035 888 aa19.62■□□□□ 0.73
VPS29-207ENST00000549970 CTR9Q6PD62 1173 aa19.62■□□□□ 0.73
VPS29-207ENST00000549970 OTUD7AQ8TE49 926 aaPredicted RBP19.62■□□□□ 0.73
VPS29-207ENST00000549970 DEFB118Q96PH6 123 aa19.62■□□□□ 0.73
VPS29-207ENST00000549970 NUDT12Q9BQG2 462 aa19.62■□□□□ 0.73
VPS29-207ENST00000549970 CWC22Q9HCG8 908 aaKnown RBP19.62■□□□□ 0.73
VPS29-207ENST00000549970 RABGAP1Q9Y3P9 1069 aa19.62■□□□□ 0.73
VPS29-207ENST00000549970 TTC41PQ6P2S7 1318 aa19.61■□□□□ 0.73
VPS29-207ENST00000549970 RNF113AO15541 343 aaKnown RBP19.61■□□□□ 0.73
VPS29-207ENST00000549970 CNMDO75829 334 aa19.61■□□□□ 0.73
VPS29-207ENST00000549970 ICA1Q05084 483 aa19.61■□□□□ 0.73
VPS29-207ENST00000549970 TRIM32Q13049 653 aa19.61■□□□□ 0.73
VPS29-207ENST00000549970 C16orf86Q6ZW13 317 aa19.61■□□□□ 0.73
VPS29-207ENST00000549970 GPR142Q7Z601 462 aa19.61■□□□□ 0.73
VPS29-207ENST00000549970 SOCS4Q8WXH5 440 aa19.61■□□□□ 0.73
VPS29-207ENST00000549970 APPBP2Q92624 585 aa19.61■□□□□ 0.73
VPS29-207ENST00000549970 OSBP2Q969R2 916 aa19.61■□□□□ 0.73
VPS29-207ENST00000549970 STRBPQ96SI9 672 aaKnown RBP19.61■□□□□ 0.73
VPS29-207ENST00000549970 SPDYE16A6NNV3 312 aaPredicted RBP19.6■□□□□ 0.73
VPS29-207ENST00000549970 ERC2O15083 957 aa19.6■□□□□ 0.73
VPS29-207ENST00000549970 WDR78Q5VTH9 848 aa19.6■□□□□ 0.73
VPS29-207ENST00000549970 PLEKHH3Q7Z736 793 aa19.6■□□□□ 0.73
VPS29-207ENST00000549970 TRIB2Q92519 343 aa19.6■□□□□ 0.73
VPS29-207ENST00000549970 CCDC17Q96LX7 622 aa19.6■□□□□ 0.73
VPS29-207ENST00000549970 ARHGEF10LQ9HCE6 1279 aa19.6■□□□□ 0.73
VPS29-207ENST00000549970 PAK6Q9NQU5 681 aaPredicted RBP19.6■□□□□ 0.73
VPS29-207ENST00000549970 ARPP21Q9UBL0 812 aaPredicted RBP19.6■□□□□ 0.73
VPS29-207ENST00000549970 FARP2O94887 1054 aaPredicted RBP19.59■□□□□ 0.73
VPS29-207ENST00000549970 TFRCP02786 760 aaKnown RBP19.59■□□□□ 0.73
VPS29-207ENST00000549970 ZFYP08048 801 aaPredicted RBP19.59■□□□□ 0.73
VPS29-207ENST00000549970 CCNA1P78396 465 aa19.59■□□□□ 0.73
VPS29-207ENST00000549970 PI4K2BQ8TCG2 481 aa19.59■□□□□ 0.73
VPS29-207ENST00000549970 TANGO6Q9C0B7 1094 aa19.59■□□□□ 0.73
VPS29-207ENST00000549970 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.59■□□□□ 0.73
VPS29-207ENST00000549970 BTBD7Q9P203 1132 aa19.59■□□□□ 0.73
VPS29-207ENST00000549970 GSG1L2A8MUP6 293 aa19.58■□□□□ 0.72
VPS29-207ENST00000549970 M0R2C6 588 aa19.58■□□□□ 0.72
VPS29-207ENST00000549970 GPAA1O43292 621 aa19.58■□□□□ 0.72
VPS29-207ENST00000549970 GLRX3O76003 335 aaKnown RBP19.58■□□□□ 0.72
VPS29-207ENST00000549970 SLC34A2O95436 690 aa19.58■□□□□ 0.72
VPS29-207ENST00000549970 ATP2B2Q01814 1243 aa19.58■□□□□ 0.72
VPS29-207ENST00000549970 KIAA1755Q5JYT7 1200 aa19.58■□□□□ 0.72
VPS29-207ENST00000549970 LBX2Q6XYB7 198 aa19.58■□□□□ 0.72
VPS29-207ENST00000549970 UBE2Q1Q7Z7E8 422 aa19.58■□□□□ 0.72
VPS29-207ENST00000549970 SIAH1Q8IUQ4 282 aa19.58■□□□□ 0.72
VPS29-207ENST00000549970 SPICE1Q8N0Z3 855 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 163.4 ms