RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 USP17L17D6RBQ6 530 aa28.19■■■□□ 2.1
COL27A1-208ENST00000494780 USP17L19D6RCP7 530 aa28.19■■■□□ 2.1
COL27A1-208ENST00000494780 USP17L20D6RJB6 530 aa28.19■■■□□ 2.1
COL27A1-208ENST00000494780 PDE6AP16499 860 aa28.19■■■□□ 2.1
COL27A1-208ENST00000494780 PLCD1P51178 756 aa28.19■■■□□ 2.1
COL27A1-208ENST00000494780 USP17L24Q0WX57 530 aa28.19■■■□□ 2.1
COL27A1-208ENST00000494780 SLC9C2Q5TAH2 1124 aa28.19■■■□□ 2.1
COL27A1-208ENST00000494780 CRNKL1Q9BZJ0 848 aaKnown RBP28.19■■■□□ 2.1
COL27A1-208ENST00000494780 PRO3102Q9H379 93 aa28.19■■■□□ 2.1
COL27A1-208ENST00000494780 POLR3DP05423 398 aaPredicted RBP28.18■■■□□ 2.1
COL27A1-208ENST00000494780 IFIT2P09913 472 aaKnown RBP28.18■■■□□ 2.1
COL27A1-208ENST00000494780 SHMT1P34896 483 aa28.18■■■□□ 2.1
COL27A1-208ENST00000494780 ZYXQ15942 572 aaKnown RBP28.18■■■□□ 2.1
COL27A1-208ENST00000494780 MAP3K21Q5TCX8 1036 aa28.18■■■□□ 2.1
COL27A1-208ENST00000494780 POTEEQ6S8J3 1075 aa28.18■■■□□ 2.1
COL27A1-208ENST00000494780 GPR142Q7Z601 462 aa28.18■■■□□ 2.1
COL27A1-208ENST00000494780 USP6NLQ92738 828 aa28.18■■■□□ 2.1
COL27A1-208ENST00000494780 PORCNQ9H237 461 aa28.18■■■□□ 2.1
COL27A1-208ENST00000494780 RABGAP1Q9Y3P9 1069 aa28.18■■■□□ 2.1
COL27A1-208ENST00000494780 DDX60LQ5H9U9 1706 aaKnown RBP28.18■■■□□ 2.1
COL27A1-208ENST00000494780 PLEKHH3Q7Z736 793 aa28.17■■■□□ 2.1
COL27A1-208ENST00000494780 DIS3LQ8TF46 1054 aaKnown RBP28.17■■■□□ 2.1
COL27A1-208ENST00000494780 ZBTB40Q9NUA8 1239 aa28.17■■■□□ 2.1
COL27A1-208ENST00000494780 APBB1O00213 710 aa28.16■■■□□ 2.1
COL27A1-208ENST00000494780 GOLIM4O00461 696 aa28.16■■■□□ 2.1
COL27A1-208ENST00000494780 RAB11FIP3O75154 756 aa28.16■■■□□ 2.1
COL27A1-208ENST00000494780 RGS2P41220 211 aa28.16■■■□□ 2.1
COL27A1-208ENST00000494780 GABPAQ06546 454 aa28.16■■■□□ 2.1
COL27A1-208ENST00000494780 MORN1Q5T089 497 aa28.16■■■□□ 2.1
COL27A1-208ENST00000494780 CATSPERGQ6ZRH7 1159 aa28.16■■■□□ 2.1
COL27A1-208ENST00000494780 DNAJC2Q99543 621 aaKnown RBP28.16■■■□□ 2.1
COL27A1-208ENST00000494780 COG6Q9Y2V7 657 aa28.16■■■□□ 2.1
COL27A1-208ENST00000494780 ZNF532Q9HCE3 1301 aa28.16■■■□□ 2.1
COL27A1-208ENST00000494780 PRKAR2AP13861 404 aaKnown RBP28.15■■■□□ 2.1
COL27A1-208ENST00000494780 ZKSCAN1P17029 563 aaPredicted RBP28.15■■■□□ 2.1
COL27A1-208ENST00000494780 VCAM1P19320 739 aa28.15■■■□□ 2.1
COL27A1-208ENST00000494780 CCNA1P78396 465 aa28.15■■■□□ 2.1
COL27A1-208ENST00000494780 SIRT2Q8IXJ6 389 aa28.15■■■□□ 2.1
COL27A1-208ENST00000494780 ACER1Q8TDN7 264 aa28.15■■■□□ 2.1
COL27A1-208ENST00000494780 NBPF3Q9H094 633 aa28.15■■■□□ 2.1
COL27A1-208ENST00000494780 CHMP4BQ9H444 224 aaKnown RBP28.15■■■□□ 2.1
COL27A1-208ENST00000494780 MCM9Q9NXL9 1143 aa28.15■■■□□ 2.1
COL27A1-208ENST00000494780 OGDHLQ9ULD0 1010 aa28.15■■■□□ 2.1
COL27A1-208ENST00000494780 NAV1Q8NEY1 1877 aa28.15■■■□□ 2.1
COL27A1-208ENST00000494780 LBX2Q6XYB7 198 aa28.14■■■□□ 2.1
COL27A1-208ENST00000494780 CWC22Q9HCG8 908 aaKnown RBP28.14■■■□□ 2.1
COL27A1-208ENST00000494780 TCRBV5S4A2TA0A5A2 114 aa28.13■■■□□ 2.09
COL27A1-208ENST00000494780 CNMDO75829 334 aa28.13■■■□□ 2.09
COL27A1-208ENST00000494780 GUCY1A2P33402 732 aa28.13■■■□□ 2.09
COL27A1-208ENST00000494780 APBA2Q99767 749 aa28.13■■■□□ 2.09
COL27A1-208ENST00000494780 GLRX3O76003 335 aaKnown RBP28.12■■■□□ 2.09
COL27A1-208ENST00000494780 MNX1P50219 401 aaPredicted RBP28.12■■■□□ 2.09
COL27A1-208ENST00000494780 CACNB2Q08289 660 aaPredicted RBP28.12■■■□□ 2.09
COL27A1-208ENST00000494780 A0A1W2PPC1 479 aa28.11■■■□□ 2.09
COL27A1-208ENST00000494780 MAP2K5Q13163 448 aa28.11■■■□□ 2.09
COL27A1-208ENST00000494780 SEPT2Q15019 361 aa28.11■■■□□ 2.09
COL27A1-208ENST00000494780 LCORLQ8N3X6 602 aa28.11■■■□□ 2.09
COL27A1-208ENST00000494780 C11orf49Q9H6J7 331 aa28.11■■■□□ 2.09
COL27A1-208ENST00000494780 DCP1AQ9NPI6 582 aaPredicted RBP28.11■■■□□ 2.09
COL27A1-208ENST00000494780 ALPK3Q96L96 1907 aa28.1■■■□□ 2.09
COL27A1-208ENST00000494780 CCL14Q16627 93 aa28.1■■■□□ 2.09
COL27A1-208ENST00000494780 SDR42E1Q8WUS8 393 aa28.1■■■□□ 2.09
COL27A1-208ENST00000494780 RPAP3Q9H6T3 665 aaPredicted RBP28.1■■■□□ 2.09
COL27A1-208ENST00000494780 PAG1Q9NWQ8 432 aa28.1■■■□□ 2.09
COL27A1-208ENST00000494780 EDC3Q96F86 508 aaKnown RBP28.09■■■□□ 2.09
COL27A1-208ENST00000494780 SLC15A5A6NIM6 579 aa28.08■■■□□ 2.09
COL27A1-208ENST00000494780 SPDYE16A6NNV3 312 aaPredicted RBP28.08■■■□□ 2.09
COL27A1-208ENST00000494780 MPHOSPH10O00566 681 aaKnown RBP28.08■■■□□ 2.09
COL27A1-208ENST00000494780 ATP5JP18859 108 aa28.08■■■□□ 2.09
COL27A1-208ENST00000494780 EVX2Q03828 476 aa28.08■■■□□ 2.09
COL27A1-208ENST00000494780 BCL11AQ9H165 835 aa28.08■■■□□ 2.09
COL27A1-208ENST00000494780 SWAP70Q9UH65 585 aa28.08■■■□□ 2.09
COL27A1-208ENST00000494780 PTPREP23469 700 aa28.07■■■□□ 2.08
COL27A1-208ENST00000494780 ADD2P35612 726 aa28.07■■■□□ 2.08
COL27A1-208ENST00000494780 C7orf61Q8IZ16 206 aa28.07■■■□□ 2.08
COL27A1-208ENST00000494780 BOLA2Q9H3K6 86 aa28.07■■■□□ 2.08
COL27A1-208ENST00000494780 ARMT1Q9H993 441 aa28.07■■■□□ 2.08
COL27A1-208ENST00000494780 BTBD7Q9P203 1132 aa28.07■■■□□ 2.08
COL27A1-208ENST00000494780 CYP2D6P10635 497 aa28.06■■■□□ 2.08
COL27A1-208ENST00000494780 CCND3P30281 292 aaPredicted RBP28.06■■■□□ 2.08
COL27A1-208ENST00000494780 WDR78Q5VTH9 848 aa28.06■■■□□ 2.08
COL27A1-208ENST00000494780 TMEM179Q6ZVK1 233 aa28.06■■■□□ 2.08
COL27A1-208ENST00000494780 DDX24Q9GZR7 859 aaKnown RBP eCLIP28.06■■■□□ 2.08
COL27A1-208ENST00000494780 ATP8A2Q9NTI2 1148 aa28.06■■■□□ 2.08
COL27A1-208ENST00000494780 STAP2Q9UGK3 403 aa28.06■■■□□ 2.08
COL27A1-208ENST00000494780 RCAN3Q9UKA8 241 aa28.06■■■□□ 2.08
COL27A1-208ENST00000494780 IVNS1ABPQ9Y6Y0 642 aa28.06■■■□□ 2.08
COL27A1-208ENST00000494780 A0A1W2PRG0 241 aa28.05■■■□□ 2.08
COL27A1-208ENST00000494780 LHX8Q68G74 356 aa28.05■■■□□ 2.08
COL27A1-208ENST00000494780 HAUS7Q99871 368 aa28.05■■■□□ 2.08
COL27A1-208ENST00000494780 HOXC10Q9NYD6 342 aa28.05■■■□□ 2.08
COL27A1-208ENST00000494780 MBD4O95243 580 aa28.04■■■□□ 2.08
COL27A1-208ENST00000494780 HOXC6P09630 235 aa28.04■■■□□ 2.08
COL27A1-208ENST00000494780 COG2Q14746 738 aa28.04■■■□□ 2.08
COL27A1-208ENST00000494780 MFSD14CQ5VZR4 134 aa28.04■■■□□ 2.08
COL27A1-208ENST00000494780 SLC44A5Q8NCS7 719 aa28.04■■■□□ 2.08
COL27A1-208ENST00000494780 RANBP2P49792 3224 aaKnown RBP28.04■■■□□ 2.08
COL27A1-208ENST00000494780 PRKAB2O43741 272 aa28.03■■■□□ 2.08
COL27A1-208ENST00000494780 GRB14Q14449 540 aa28.03■■■□□ 2.08
COL27A1-208ENST00000494780 DYNLL2Q96FJ2 89 aa28.03■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 117.4 ms