RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 SFRP5Q5T4F7 317 aa7.71□□□□□ -1.18
HMGB1P38-201ENST00000490557 CDCP2Q5VXM1 449 aa7.71□□□□□ -1.18
HMGB1P38-201ENST00000490557 TM9SF2Q99805 663 aa7.71□□□□□ -1.18
HMGB1P38-201ENST00000490557 CNNM2Q9H8M5 875 aa7.71□□□□□ -1.18
HMGB1P38-201ENST00000490557 PPP1R1BQ9UD71 204 aaPredicted RBP7.71□□□□□ -1.18
HMGB1P38-201ENST00000490557 CEP131Q9UPN4 1083 aa7.71□□□□□ -1.18
HMGB1P38-201ENST00000490557 RGS13O14921 159 aa7.7□□□□□ -1.18
HMGB1P38-201ENST00000490557 TGFB1P01137 390 aa7.7□□□□□ -1.18
HMGB1P38-201ENST00000490557 NME1P15531 152 aaKnown RBP7.7□□□□□ -1.18
HMGB1P38-201ENST00000490557 BAHD1Q8TBE0 780 aaPredicted RBP7.7□□□□□ -1.18
HMGB1P38-201ENST00000490557 COX4I2Q96KJ9 171 aa7.7□□□□□ -1.18
HMGB1P38-201ENST00000490557 MAPK8IP1Q9UQF2 711 aa7.7□□□□□ -1.18
HMGB1P38-201ENST00000490557 FAM86C2PA6NEL3 165 aa7.69□□□□□ -1.18
HMGB1P38-201ENST00000490557 CBX7O95931 251 aa7.69□□□□□ -1.18
HMGB1P38-201ENST00000490557 EOMESO95936 686 aa7.69□□□□□ -1.18
HMGB1P38-201ENST00000490557 FOSL1P15407 271 aa7.69□□□□□ -1.18
HMGB1P38-201ENST00000490557 PPP2R5EQ16537 467 aa7.69□□□□□ -1.18
HMGB1P38-201ENST00000490557 LSRQ86X29 649 aaPredicted RBP7.69□□□□□ -1.18
HMGB1P38-201ENST00000490557 RBBP8NLQ8NC74 664 aaPredicted RBP7.69□□□□□ -1.18
HMGB1P38-201ENST00000490557 RIN3Q8TB24 985 aa7.69□□□□□ -1.18
HMGB1P38-201ENST00000490557 TANGO6Q9C0B7 1094 aa7.69□□□□□ -1.18
HMGB1P38-201ENST00000490557 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.69□□□□□ -1.18
HMGB1P38-201ENST00000490557 MRVI1Q9Y6F6 885 aa7.69□□□□□ -1.18
HMGB1P38-201ENST00000490557 FAM155AB1AL88 458 aaPredicted RBP7.68□□□□□ -1.18
HMGB1P38-201ENST00000490557 COBLO75128 1261 aa7.68□□□□□ -1.18
HMGB1P38-201ENST00000490557 ITIH2P19823 946 aa7.68□□□□□ -1.18
HMGB1P38-201ENST00000490557 GUCY2CP25092 1073 aa7.68□□□□□ -1.18
HMGB1P38-201ENST00000490557 POLR2BP30876 1174 aaKnown RBP7.68□□□□□ -1.18
HMGB1P38-201ENST00000490557 CCNFP41002 786 aa7.68□□□□□ -1.18
HMGB1P38-201ENST00000490557 GIPRP48546 466 aa7.68□□□□□ -1.18
HMGB1P38-201ENST00000490557 SF3A1Q15459 793 aaKnown RBP7.68□□□□□ -1.18
HMGB1P38-201ENST00000490557 INTS5Q6P9B9 1019 aaKnown RBP7.68□□□□□ -1.18
HMGB1P38-201ENST00000490557 FAM181AQ8N9Y4 354 aa7.68□□□□□ -1.18
HMGB1P38-201ENST00000490557 RNF112Q9ULX5 631 aa7.68□□□□□ -1.18
HMGB1P38-201ENST00000490557 R3HCC1Q9Y3T6 440 aaKnown RBP7.68□□□□□ -1.18
HMGB1P38-201ENST00000490557 PRR19A6NJB7 356 aa7.67□□□□□ -1.18
HMGB1P38-201ENST00000490557 IGF2BP3O00425 579 aaKnown RBP eCLIP7.67□□□□□ -1.18
HMGB1P38-201ENST00000490557 CLEC3AO75596 197 aa7.67□□□□□ -1.18
HMGB1P38-201ENST00000490557 ATP2B1P20020 1258 aa7.67□□□□□ -1.18
HMGB1P38-201ENST00000490557 RNF4P78317 190 aa7.67□□□□□ -1.18
HMGB1P38-201ENST00000490557 INTS3Q68E01 1043 aaKnown RBP7.67□□□□□ -1.18
HMGB1P38-201ENST00000490557 MCF2L2Q86YR7 1114 aa7.67□□□□□ -1.18
HMGB1P38-201ENST00000490557 DNAJB8Q8NHS0 232 aa7.67□□□□□ -1.18
HMGB1P38-201ENST00000490557 SHDQ96IW2 340 aa7.67□□□□□ -1.18
HMGB1P38-201ENST00000490557 DHRS1Q96LJ7 313 aa7.67□□□□□ -1.18
HMGB1P38-201ENST00000490557 SLC12A7Q9Y666 1083 aa7.67□□□□□ -1.18
HMGB1P38-201ENST00000490557 TNFRSF10CO14798 259 aa7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 FGRP09769 529 aa7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 KIR3DL1P43629 444 aa7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 TNNI3KQ59H18 835 aa7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 RUFY4Q6ZNE9 571 aa7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 MFSD4AQ8N468 514 aa7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 TAB3Q8N5C8 712 aaPredicted RBP7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 PPP1R13LQ8WUF5 828 aa7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 HEXIM2Q96MH2 286 aaKnown RBP7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 KREMEN1Q96MU8 473 aa7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 SLC9A7Q96T83 725 aa7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 GMLQ99445 158 aa7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 ASPNQ9BXN1 380 aa7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 MKNK2Q9HBH9 465 aa7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 KCNH3Q9ULD8 1083 aa7.66□□□□□ -1.18
HMGB1P38-201ENST00000490557 STK10O94804 968 aaKnown RBP7.65□□□□□ -1.18
HMGB1P38-201ENST00000490557 CEACAM5P06731 702 aa7.65□□□□□ -1.18
HMGB1P38-201ENST00000490557 SSTR4P31391 388 aa7.65□□□□□ -1.18
HMGB1P38-201ENST00000490557 ZMYM1Q5SVZ6 1142 aa7.65□□□□□ -1.18
HMGB1P38-201ENST00000490557 NETO1Q8TDF5 533 aa7.65□□□□□ -1.18
HMGB1P38-201ENST00000490557 RNF141Q8WVD5 230 aa7.65□□□□□ -1.18
HMGB1P38-201ENST00000490557 SLC6A18Q96N87 628 aa7.65□□□□□ -1.18
HMGB1P38-201ENST00000490557 UBOX5O94941 541 aa7.64□□□□□ -1.19
HMGB1P38-201ENST00000490557 ITGB7P26010 798 aa7.64□□□□□ -1.19
HMGB1P38-201ENST00000490557 IFI16Q16666 785 aaKnown RBP7.64□□□□□ -1.19
HMGB1P38-201ENST00000490557 FAM214BQ7L5A3 538 aa7.64□□□□□ -1.19
HMGB1P38-201ENST00000490557 TTC6Q86TZ1 520 aa7.64□□□□□ -1.19
HMGB1P38-201ENST00000490557 C19orf47Q8N9M1 422 aaKnown RBP7.64□□□□□ -1.19
HMGB1P38-201ENST00000490557 MKRN2Q9H000 416 aaKnown RBP7.64□□□□□ -1.19
HMGB1P38-201ENST00000490557 ZC3H7BQ9UGR2 993 aaKnown RBP7.64□□□□□ -1.19
HMGB1P38-201ENST00000490557 TMEM265A0A087WTH1 108 aa7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 SCO2A0A1W2PP80 73 aa7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 SMAD7O15105 426 aaKnown RBP7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 ACRP10323 421 aa7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 HOXA10P31260 410 aaPredicted RBP7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 GTF2F1P35269 517 aaKnown RBP eCLIP7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 OXCT1P55809 520 aa7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 BBS9Q3SYG4 887 aa7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 CDKAL1Q5VV42 579 aa7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 UNC5AQ6ZN44 842 aa7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 PLD6Q8N2A8 252 aaKnown RBP7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 SREK1Q8WXA9 508 aaKnown RBP7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 ASCC2Q9H1I8 757 aaPredicted RBP7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 ZNF408Q9H9D4 720 aa7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 PCMTD2Q9NV79 361 aa7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 BSDC1Q9NW68 430 aaPredicted RBP7.63□□□□□ -1.19
HMGB1P38-201ENST00000490557 ZNF865P0CJ78 1059 aaPredicted RBP7.62□□□□□ -1.19
HMGB1P38-201ENST00000490557 ETFBP38117 255 aa7.62□□□□□ -1.19
HMGB1P38-201ENST00000490557 C22orf34Q6ZV56 151 aa7.62□□□□□ -1.19
HMGB1P38-201ENST00000490557 CCDC144CPQ8IYA2 1237 aa7.62□□□□□ -1.19
HMGB1P38-201ENST00000490557 ZNF512BQ96KM6 892 aaPredicted RBP7.62□□□□□ -1.19
HMGB1P38-201ENST00000490557 PHAXQ9H814 394 aaKnown RBP7.62□□□□□ -1.19
HMGB1P38-201ENST00000490557 ACTR10Q9NZ32 417 aa7.62□□□□□ -1.19
HMGB1P38-201ENST00000490557 SUCOQ9UBS9 1254 aaKnown RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms