RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 RPTORQ8N122 1335 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 KIAA0100Q14667 2235 aaKnown RBP16.09■□□□□ 0.17
CPSF4-210ENST00000469897 DOCK1Q14185 1865 aa16.08■□□□□ 0.17
CPSF4-210ENST00000469897 MPHOSPH10O00566 681 aaKnown RBP16.08■□□□□ 0.16
CPSF4-210ENST00000469897 PRKAB2O43741 272 aa16.08■□□□□ 0.16
CPSF4-210ENST00000469897 CYP2D6P10635 497 aa16.08■□□□□ 0.16
CPSF4-210ENST00000469897 CAPN2P17655 700 aa16.08■□□□□ 0.16
CPSF4-210ENST00000469897 MAPK4P31152 587 aa16.08■□□□□ 0.16
CPSF4-210ENST00000469897 GUCY1A2P33402 732 aa16.08■□□□□ 0.16
CPSF4-210ENST00000469897 SEPT2Q15019 361 aa16.08■□□□□ 0.16
CPSF4-210ENST00000469897 TRIB2Q92519 343 aa16.08■□□□□ 0.16
CPSF4-210ENST00000469897 C12orf42Q96LP6 360 aa16.08■□□□□ 0.16
CPSF4-210ENST00000469897 KIAA1683Q9H0B3 1180 aa16.08■□□□□ 0.16
CPSF4-210ENST00000469897 CHMP4BQ9H444 224 aaKnown RBP16.08■□□□□ 0.16
CPSF4-210ENST00000469897 ARMT1Q9H993 441 aa16.08■□□□□ 0.16
CPSF4-210ENST00000469897 PAG1Q9NWQ8 432 aa16.08■□□□□ 0.16
CPSF4-210ENST00000469897 NR2E3Q9Y5X4 410 aa16.08■□□□□ 0.16
CPSF4-210ENST00000469897 RBBP6Q7Z6E9 1792 aaKnown RBP16.08■□□□□ 0.16
CPSF4-210ENST00000469897 EVI5O60447 810 aa16.07■□□□□ 0.16
CPSF4-210ENST00000469897 CNMDO75829 334 aa16.07■□□□□ 0.16
CPSF4-210ENST00000469897 ATP5JP18859 108 aa16.07■□□□□ 0.16
CPSF4-210ENST00000469897 USP14P54578 494 aa16.07■□□□□ 0.16
CPSF4-210ENST00000469897 GABPAQ06546 454 aa16.07■□□□□ 0.16
CPSF4-210ENST00000469897 GPR142Q7Z601 462 aa16.07■□□□□ 0.16
CPSF4-210ENST00000469897 PLEKHH3Q7Z736 793 aa16.07■□□□□ 0.16
CPSF4-210ENST00000469897 DIS3LQ8TF46 1054 aaKnown RBP16.07■□□□□ 0.16
CPSF4-210ENST00000469897 DCP1AQ9NPI6 582 aaPredicted RBP16.07■□□□□ 0.16
CPSF4-210ENST00000469897 RBM27Q9P2N5 1060 aaKnown RBP16.07■□□□□ 0.16
CPSF4-210ENST00000469897 PHIPQ8WWQ0 1821 aa16.06■□□□□ 0.16
CPSF4-210ENST00000469897 SMARCA5O60264 1052 aaPredicted RBP16.06■□□□□ 0.16
CPSF4-210ENST00000469897 CHGBP05060 677 aa16.06■□□□□ 0.16
CPSF4-210ENST00000469897 XRCC5P13010 732 aaKnown RBP16.06■□□□□ 0.16
CPSF4-210ENST00000469897 VCAM1P19320 739 aa16.06■□□□□ 0.16
CPSF4-210ENST00000469897 ADD2P35612 726 aa16.06■□□□□ 0.16
CPSF4-210ENST00000469897 PDE3AQ14432 1141 aa16.06■□□□□ 0.16
CPSF4-210ENST00000469897 NECAB2Q7Z6G3 386 aa16.06■□□□□ 0.16
CPSF4-210ENST00000469897 GTF3C2Q8WUA4 911 aaPredicted RBP16.06■□□□□ 0.16
CPSF4-210ENST00000469897 USP6NLQ92738 828 aa16.06■□□□□ 0.16
CPSF4-210ENST00000469897 DYNLL2Q96FJ2 89 aa16.06■□□□□ 0.16
CPSF4-210ENST00000469897 CWC22Q9HCG8 908 aaKnown RBP16.06■□□□□ 0.16
CPSF4-210ENST00000469897 RABGAP1Q9Y3P9 1069 aa16.06■□□□□ 0.16
CPSF4-210ENST00000469897 A0A1W2PRG0 241 aa16.05■□□□□ 0.16
CPSF4-210ENST00000469897 CCL14Q16627 93 aa16.05■□□□□ 0.16
CPSF4-210ENST00000469897 MORN1Q5T089 497 aa16.05■□□□□ 0.16
CPSF4-210ENST00000469897 SLC44A5Q8NCS7 719 aa16.05■□□□□ 0.16
CPSF4-210ENST00000469897 SOCS4Q8WXH5 440 aa16.05■□□□□ 0.16
CPSF4-210ENST00000469897 HAUS7Q99871 368 aa16.05■□□□□ 0.16
CPSF4-210ENST00000469897 RPAP3Q9H6T3 665 aaPredicted RBP16.05■□□□□ 0.16
CPSF4-210ENST00000469897 SMIM22K7EJ46 135 aa16.04■□□□□ 0.16
CPSF4-210ENST00000469897 MBD4O95243 580 aa16.04■□□□□ 0.16
CPSF4-210ENST00000469897 PRKAR2AP13861 404 aaKnown RBP16.04■□□□□ 0.16
CPSF4-210ENST00000469897 CACNB2Q08289 660 aaPredicted RBP16.04■□□□□ 0.16
CPSF4-210ENST00000469897 WDR78Q5VTH9 848 aa16.04■□□□□ 0.16
CPSF4-210ENST00000469897 LRRCC1Q9C099 1032 aa16.04■□□□□ 0.16
CPSF4-210ENST00000469897 BTBD7Q9P203 1132 aa16.04■□□□□ 0.16
CPSF4-210ENST00000469897 CYP2D7A0A087X1C5 515 aa16.03■□□□□ 0.16
CPSF4-210ENST00000469897 ZKSCAN1P17029 563 aaPredicted RBP16.03■□□□□ 0.16
CPSF4-210ENST00000469897 RGS2P41220 211 aa16.03■□□□□ 0.16
CPSF4-210ENST00000469897 CCNA1P78396 465 aa16.03■□□□□ 0.16
CPSF4-210ENST00000469897 MAP2K5Q13163 448 aa16.03■□□□□ 0.16
CPSF4-210ENST00000469897 MAP3K21Q5TCX8 1036 aa16.03■□□□□ 0.16
CPSF4-210ENST00000469897 SIAH1Q8IUQ4 282 aa16.03■□□□□ 0.16
CPSF4-210ENST00000469897 TRMT44Q8IYL2 757 aaKnown RBP16.03■□□□□ 0.16
CPSF4-210ENST00000469897 ANKLE1Q8NAG6 615 aa16.03■□□□□ 0.16
CPSF4-210ENST00000469897 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.03■□□□□ 0.16
CPSF4-210ENST00000469897 NBPF3Q9H094 633 aa16.03■□□□□ 0.16
CPSF4-210ENST00000469897 ATP8A2Q9NTI2 1148 aa16.03■□□□□ 0.16
CPSF4-210ENST00000469897 USP17L12C9JPN9 530 aa16.02■□□□□ 0.16
CPSF4-210ENST00000469897 USP17L21D6R901 530 aa16.02■□□□□ 0.16
CPSF4-210ENST00000469897 GLRX3O76003 335 aaKnown RBP16.02■□□□□ 0.16
CPSF4-210ENST00000469897 PTPREP23469 700 aa16.02■□□□□ 0.16
CPSF4-210ENST00000469897 CCND3P30281 292 aaPredicted RBP16.02■□□□□ 0.16
CPSF4-210ENST00000469897 MNX1P50219 401 aaPredicted RBP16.02■□□□□ 0.16
CPSF4-210ENST00000469897 COG2Q14746 738 aa16.02■□□□□ 0.16
CPSF4-210ENST00000469897 KIAA1755Q5JYT7 1200 aa16.02■□□□□ 0.16
CPSF4-210ENST00000469897 LBX2Q6XYB7 198 aa16.02■□□□□ 0.16
CPSF4-210ENST00000469897 HOXC10Q9NYD6 342 aa16.02■□□□□ 0.16
CPSF4-210ENST00000469897 STAP2Q9UGK3 403 aa16.02■□□□□ 0.16
CPSF4-210ENST00000469897 SWAP70Q9UH65 585 aa16.02■□□□□ 0.16
CPSF4-210ENST00000469897 OGDHLQ9ULD0 1010 aa16.02■□□□□ 0.16
CPSF4-210ENST00000469897 SIPA1L1O43166 1804 aa16.02■□□□□ 0.16
CPSF4-210ENST00000469897 SPDYE16A6NNV3 312 aaPredicted RBP16.01■□□□□ 0.15
CPSF4-210ENST00000469897 AKR1B1P15121 316 aa16.01■□□□□ 0.15
CPSF4-210ENST00000469897 UBE3CQ15386 1083 aa16.01■□□□□ 0.15
CPSF4-210ENST00000469897 C12orf60Q5U649 245 aa16.01■□□□□ 0.15
CPSF4-210ENST00000469897 TMEM179Q6ZVK1 233 aa16.01■□□□□ 0.15
CPSF4-210ENST00000469897 PUS7LQ9H0K6 701 aaKnown RBP16.01■□□□□ 0.15
CPSF4-210ENST00000469897 PRO3102Q9H379 93 aa16.01■□□□□ 0.15
CPSF4-210ENST00000469897 C11orf49Q9H6J7 331 aa16.01■□□□□ 0.15
CPSF4-210ENST00000469897 FLRT1Q9NZU1 646 aa16.01■□□□□ 0.15
CPSF4-210ENST00000469897 SLC4A4Q9Y6R1 1079 aa16.01■□□□□ 0.15
CPSF4-210ENST00000469897 SLC15A5A6NIM6 579 aa16■□□□□ 0.15
CPSF4-210ENST00000469897 CDK8P49336 464 aa16■□□□□ 0.15
CPSF4-210ENST00000469897 LHX8Q68G74 356 aa16■□□□□ 0.15
CPSF4-210ENST00000469897 ZSCAN25Q6NSZ9 544 aa16■□□□□ 0.15
CPSF4-210ENST00000469897 CLEC10AQ8IUN9 316 aa16■□□□□ 0.15
CPSF4-210ENST00000469897 C7orf61Q8IZ16 206 aa16■□□□□ 0.15
CPSF4-210ENST00000469897 APBA2Q99767 749 aa16■□□□□ 0.15
CPSF4-210ENST00000469897 TANGO6Q9C0B7 1094 aa16■□□□□ 0.15
CPSF4-210ENST00000469897 LOC285556D6RIA3 1793 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms