RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 LCORLQ8N3X6 602 aa17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 EDC3Q96F86 508 aaKnown RBP17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 HTATIP2Q9BUP3 242 aa17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 ATP8A2Q9NTI2 1148 aa17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 FARP2O94887 1054 aaPredicted RBP17.35■□□□□ 0.37
SNRNP40-203ENST00000463988 ERVK-9P63128 1117 aa17.35■□□□□ 0.37
SNRNP40-203ENST00000463988 ERVK-24P63145 666 aa17.35■□□□□ 0.37
SNRNP40-203ENST00000463988 CATSPERGQ6ZRH7 1159 aa17.35■□□□□ 0.37
SNRNP40-203ENST00000463988 SOCS4Q8WXH5 440 aa17.35■□□□□ 0.37
SNRNP40-203ENST00000463988 DEFB118Q96PH6 123 aa17.35■□□□□ 0.37
SNRNP40-203ENST00000463988 NUDT12Q9BQG2 462 aa17.35■□□□□ 0.37
SNRNP40-203ENST00000463988 CRISPLD2Q9H0B8 497 aa17.35■□□□□ 0.37
SNRNP40-203ENST00000463988 RABGAP1Q9Y3P9 1069 aa17.35■□□□□ 0.37
SNRNP40-203ENST00000463988 NAV1Q8NEY1 1877 aa17.35■□□□□ 0.37
SNRNP40-203ENST00000463988 H0YGN5 161 aa17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 TFRCP02786 760 aaKnown RBP17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 GUCY1A2P33402 732 aa17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 UBE3CQ15386 1083 aa17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 Q3C1V9 767 aa17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 POTEEQ6S8J3 1075 aa17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 LBX2Q6XYB7 198 aa17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 TRMT44Q8IYL2 757 aaKnown RBP17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 RPTORQ8N122 1335 aa17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 ACER1Q8TDN7 264 aa17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 SDR42E1Q8WUS8 393 aa17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 BCL11AQ9H165 835 aa17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 ARMT1Q9H993 441 aa17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 PCDH10Q9P2E7 1040 aa17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 SWAP70Q9UH65 585 aa17.34■□□□□ 0.37
SNRNP40-203ENST00000463988 MBD4O95243 580 aa17.33■□□□□ 0.36
SNRNP40-203ENST00000463988 VCAM1P19320 739 aa17.33■□□□□ 0.36
SNRNP40-203ENST00000463988 SEPT2Q15019 361 aa17.33■□□□□ 0.36
SNRNP40-203ENST00000463988 ZYXQ15942 572 aaKnown RBP17.33■□□□□ 0.36
SNRNP40-203ENST00000463988 ZSCAN25Q6NSZ9 544 aa17.33■□□□□ 0.36
SNRNP40-203ENST00000463988 CCAR1Q8IX12 1150 aaKnown RBP17.33■□□□□ 0.36
SNRNP40-203ENST00000463988 USP6NLQ92738 828 aa17.33■□□□□ 0.36
SNRNP40-203ENST00000463988 DPF3Q92784 378 aa17.33■□□□□ 0.36
SNRNP40-203ENST00000463988 PEX10O60683 326 aa17.32■□□□□ 0.36
SNRNP40-203ENST00000463988 CCNA1P78396 465 aa17.32■□□□□ 0.36
SNRNP40-203ENST00000463988 TMEM179Q6ZVK1 233 aa17.32■□□□□ 0.36
SNRNP40-203ENST00000463988 GPR142Q7Z601 462 aa17.32■□□□□ 0.36
SNRNP40-203ENST00000463988 PLEKHH3Q7Z736 793 aa17.32■□□□□ 0.36
SNRNP40-203ENST00000463988 ANKLE1Q8NAG6 615 aa17.32■□□□□ 0.36
SNRNP40-203ENST00000463988 PAGR1Q9BTK6 254 aa17.32■□□□□ 0.36
SNRNP40-203ENST00000463988 PORCNQ9H237 461 aa17.32■□□□□ 0.36
SNRNP40-203ENST00000463988 DCTPP1Q9H773 170 aa17.32■□□□□ 0.36
SNRNP40-203ENST00000463988 HMX1Q9NP08 348 aaPredicted RBP17.32■□□□□ 0.36
SNRNP40-203ENST00000463988 ECHDC1Q9NTX5 307 aa17.32■□□□□ 0.36
SNRNP40-203ENST00000463988 PLXNB2O15031 1838 aa17.32■□□□□ 0.36
SNRNP40-203ENST00000463988 TRIOBPQ9H2D6 2365 aa17.31■□□□□ 0.36
SNRNP40-203ENST00000463988 SMARCA5O60264 1052 aaPredicted RBP17.31■□□□□ 0.36
SNRNP40-203ENST00000463988 CNMDO75829 334 aa17.31■□□□□ 0.36
SNRNP40-203ENST00000463988 CYP2D6P10635 497 aa17.31■□□□□ 0.36
SNRNP40-203ENST00000463988 CYP2B6P20813 491 aa17.31■□□□□ 0.36
SNRNP40-203ENST00000463988 EVX2Q03828 476 aa17.31■□□□□ 0.36
SNRNP40-203ENST00000463988 MORN1Q5T089 497 aa17.31■□□□□ 0.36
SNRNP40-203ENST00000463988 MAP3K21Q5TCX8 1036 aa17.31■□□□□ 0.36
SNRNP40-203ENST00000463988 TRIB2Q92519 343 aa17.31■□□□□ 0.36
SNRNP40-203ENST00000463988 DDRGK1Q96HY6 314 aa17.31■□□□□ 0.36
SNRNP40-203ENST00000463988 MPHOSPH10O00566 681 aaKnown RBP17.3■□□□□ 0.36
SNRNP40-203ENST00000463988 PRKAB2O43741 272 aa17.3■□□□□ 0.36
SNRNP40-203ENST00000463988 GLRX3O76003 335 aaKnown RBP17.3■□□□□ 0.36
SNRNP40-203ENST00000463988 RGS2P41220 211 aa17.3■□□□□ 0.36
SNRNP40-203ENST00000463988 SLFNL1Q499Z3 407 aa17.3■□□□□ 0.36
SNRNP40-203ENST00000463988 C12orf60Q5U649 245 aa17.3■□□□□ 0.36
SNRNP40-203ENST00000463988 AMOTL1Q8IY63 956 aa17.3■□□□□ 0.36
SNRNP40-203ENST00000463988 CCDC17Q96LX7 622 aa17.3■□□□□ 0.36
SNRNP40-203ENST00000463988 RPAP3Q9H6T3 665 aaPredicted RBP17.3■□□□□ 0.36
SNRNP40-203ENST00000463988 COLQQ9Y215 455 aaPredicted RBP17.3■□□□□ 0.36
SNRNP40-203ENST00000463988 NR2E3Q9Y5X4 410 aa17.3■□□□□ 0.36
SNRNP40-203ENST00000463988 A0A1W2PRG0 241 aa17.29■□□□□ 0.36
SNRNP40-203ENST00000463988 TRIM32Q13049 653 aa17.29■□□□□ 0.36
SNRNP40-203ENST00000463988 SLC44A5Q8NCS7 719 aa17.29■□□□□ 0.36
SNRNP40-203ENST00000463988 DYNLL2Q96FJ2 89 aa17.29■□□□□ 0.36
SNRNP40-203ENST00000463988 GPATCH3Q96I76 525 aa17.29■□□□□ 0.36
SNRNP40-203ENST00000463988 HOXC10Q9NYD6 342 aa17.29■□□□□ 0.36
SNRNP40-203ENST00000463988 MYH7P12883 1935 aa17.28■□□□□ 0.36
SNRNP40-203ENST00000463988 SLC15A5A6NIM6 579 aa17.28■□□□□ 0.36
SNRNP40-203ENST00000463988 SPDYE16A6NNV3 312 aaPredicted RBP17.28■□□□□ 0.36
SNRNP40-203ENST00000463988 USP17L12C9JPN9 530 aa17.28■□□□□ 0.36
SNRNP40-203ENST00000463988 USP17L21D6R901 530 aa17.28■□□□□ 0.36
SNRNP40-203ENST00000463988 PRKAR2AP13861 404 aaKnown RBP17.28■□□□□ 0.36
SNRNP40-203ENST00000463988 ZKSCAN1P17029 563 aaPredicted RBP17.28■□□□□ 0.36
SNRNP40-203ENST00000463988 COG2Q14746 738 aa17.28■□□□□ 0.36
SNRNP40-203ENST00000463988 C16orf86Q6ZW13 317 aa17.28■□□□□ 0.36
SNRNP40-203ENST00000463988 NECAB2Q7Z6G3 386 aa17.28■□□□□ 0.36
SNRNP40-203ENST00000463988 LPAR1Q92633 364 aa17.28■□□□□ 0.36
SNRNP40-203ENST00000463988 APBA2Q99767 749 aa17.28■□□□□ 0.36
SNRNP40-203ENST00000463988 SH2D4AQ9H788 454 aa17.28■□□□□ 0.36
SNRNP40-203ENST00000463988 SLC4A4Q9Y6R1 1079 aa17.28■□□□□ 0.36
SNRNP40-203ENST00000463988 CHGBP05060 677 aa17.27■□□□□ 0.36
SNRNP40-203ENST00000463988 CDK8P49336 464 aa17.27■□□□□ 0.36
SNRNP40-203ENST00000463988 MAP2K5Q13163 448 aa17.27■□□□□ 0.36
SNRNP40-203ENST00000463988 KBTBD3Q8NAB2 608 aa17.27■□□□□ 0.36
SNRNP40-203ENST00000463988 PAWRQ96IZ0 340 aaKnown RBP17.27■□□□□ 0.36
SNRNP40-203ENST00000463988 PUS7LQ9H0K6 701 aaKnown RBP17.27■□□□□ 0.36
SNRNP40-203ENST00000463988 ARHGEF10LQ9HCE6 1279 aa17.27■□□□□ 0.36
SNRNP40-203ENST00000463988 CWC22Q9HCG8 908 aaKnown RBP17.27■□□□□ 0.36
SNRNP40-203ENST00000463988 BTBD7Q9P203 1132 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms