RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 LIG3P49916 1009 aa6.82□□□□□ -1.32
VPS29-202ENST00000447578 RPS26P62854 115 aaKnown RBP6.82□□□□□ -1.32
VPS29-202ENST00000447578 RALGPS1Q5JS13 557 aa6.82□□□□□ -1.32
VPS29-202ENST00000447578 ZNF746Q6NUN9 644 aaPredicted RBP6.82□□□□□ -1.32
VPS29-202ENST00000447578 AGMOQ6ZNB7 445 aa6.82□□□□□ -1.32
VPS29-202ENST00000447578 TTC6Q86TZ1 520 aa6.82□□□□□ -1.32
VPS29-202ENST00000447578 C1QL4Q86Z23 238 aa6.82□□□□□ -1.32
VPS29-202ENST00000447578 FRMD6Q96NE9 622 aa6.82□□□□□ -1.32
VPS29-202ENST00000447578 NSUN3Q9H649 340 aaKnown RBP6.82□□□□□ -1.32
VPS29-202ENST00000447578 TSPAN15O95858 294 aa6.81□□□□□ -1.32
VPS29-202ENST00000447578 ESR1P03372 595 aa6.81□□□□□ -1.32
VPS29-202ENST00000447578 C1QTNF9P0C862 333 aa6.81□□□□□ -1.32
VPS29-202ENST00000447578 CYP7A1P22680 504 aa6.81□□□□□ -1.32
VPS29-202ENST00000447578 HK2P52789 917 aa6.81□□□□□ -1.32
VPS29-202ENST00000447578 MEI1Q5TIA1 1274 aa6.81□□□□□ -1.32
VPS29-202ENST00000447578 TTLL10Q6ZVT0 673 aa6.81□□□□□ -1.32
VPS29-202ENST00000447578 MRPL41Q8IXM3 137 aaKnown RBP6.81□□□□□ -1.32
VPS29-202ENST00000447578 TMEM87BQ96K49 555 aa6.81□□□□□ -1.32
VPS29-202ENST00000447578 Q96M66 194 aa6.81□□□□□ -1.32
VPS29-202ENST00000447578 DUSP9Q99956 384 aaKnown RBP6.81□□□□□ -1.32
VPS29-202ENST00000447578 AK5Q9Y6K8 562 aa6.81□□□□□ -1.32
VPS29-202ENST00000447578 PRPF40AO75400 957 aaKnown RBP6.8□□□□□ -1.32
VPS29-202ENST00000447578 TFE3P19532 575 aaPredicted RBP6.8□□□□□ -1.32
VPS29-202ENST00000447578 KIR3DL1P43629 444 aa6.8□□□□□ -1.32
VPS29-202ENST00000447578 RBM25P49756 843 aaKnown RBP6.8□□□□□ -1.32
VPS29-202ENST00000447578 LCNL1Q6ZST4 164 aa6.8□□□□□ -1.32
VPS29-202ENST00000447578 ABHD4Q8TB40 342 aa6.8□□□□□ -1.32
VPS29-202ENST00000447578 JARID2Q92833 1246 aaPredicted RBP6.8□□□□□ -1.32
VPS29-202ENST00000447578 PPP1R16BQ96T49 567 aa6.8□□□□□ -1.32
VPS29-202ENST00000447578 ADAMTS10Q9H324 1103 aa6.8□□□□□ -1.32
VPS29-202ENST00000447578 TLR6Q9Y2C9 796 aa6.8□□□□□ -1.32
VPS29-202ENST00000447578 SLC6A19Q695T7 634 aa6.79□□□□□ -1.32
VPS29-202ENST00000447578 ANKLE2Q86XL3 938 aa6.79□□□□□ -1.32
VPS29-202ENST00000447578 CREG2Q8IUH2 290 aa6.79□□□□□ -1.32
VPS29-202ENST00000447578 LRRC56Q8IYG6 542 aaPredicted RBP6.79□□□□□ -1.32
VPS29-202ENST00000447578 DNAJB8Q8NHS0 232 aa6.79□□□□□ -1.32
VPS29-202ENST00000447578 ACSF2Q96CM8 615 aaPredicted RBP6.79□□□□□ -1.32
VPS29-202ENST00000447578 MIR1-1HGQ9H1L0 117 aa6.79□□□□□ -1.32
VPS29-202ENST00000447578 DUSP15Q9H1R2 295 aaPredicted RBP6.79□□□□□ -1.32
VPS29-202ENST00000447578 TRHRP34981 398 aaPredicted RBP6.78□□□□□ -1.32
VPS29-202ENST00000447578 MCATQ8IVS2 390 aaKnown RBP6.78□□□□□ -1.32
VPS29-202ENST00000447578 FBXO15Q8NCQ5 510 aaPredicted RBP6.78□□□□□ -1.32
VPS29-202ENST00000447578 CCDC120Q96HB5 630 aa6.78□□□□□ -1.32
VPS29-202ENST00000447578 CORINQ9Y5Q5 1042 aa6.78□□□□□ -1.32
VPS29-202ENST00000447578 TACC3Q9Y6A5 838 aa6.78□□□□□ -1.32
VPS29-202ENST00000447578 UPK3BL1B0FP48 263 aa6.77□□□□□ -1.33
VPS29-202ENST00000447578 UPK3BL2E5RIL1 263 aa6.77□□□□□ -1.33
VPS29-202ENST00000447578 NFIBO00712 420 aa6.77□□□□□ -1.33
VPS29-202ENST00000447578 TPP2P29144 1249 aaPredicted RBP6.77□□□□□ -1.33
VPS29-202ENST00000447578 CCDC27Q2M243 656 aa6.77□□□□□ -1.33
VPS29-202ENST00000447578 TMPRSS7Q7RTY8 843 aa6.77□□□□□ -1.33
VPS29-202ENST00000447578 PIWIL2Q8TC59 973 aaKnown RBP6.77□□□□□ -1.33
VPS29-202ENST00000447578 PPP1R13LQ8WUF5 828 aa6.77□□□□□ -1.33
VPS29-202ENST00000447578 MYLIPQ8WY64 445 aa6.77□□□□□ -1.33
VPS29-202ENST00000447578 ZNF428Q96B54 188 aa6.77□□□□□ -1.33
VPS29-202ENST00000447578 COX4I2Q96KJ9 171 aa6.77□□□□□ -1.33
VPS29-202ENST00000447578 DCP1AQ9NPI6 582 aaPredicted RBP6.77□□□□□ -1.33
VPS29-202ENST00000447578 TMEM59LQ9UK28 342 aa6.77□□□□□ -1.33
VPS29-202ENST00000447578 CEP131Q9UPN4 1083 aa6.77□□□□□ -1.33
VPS29-202ENST00000447578 F6X3S4 739 aa6.76□□□□□ -1.33
VPS29-202ENST00000447578 ZSCAN22P10073 491 aaPredicted RBP6.76□□□□□ -1.33
VPS29-202ENST00000447578 RAC2P15153 192 aa6.76□□□□□ -1.33
VPS29-202ENST00000447578 ETV3P41162 512 aa6.76□□□□□ -1.33
VPS29-202ENST00000447578 RPL6Q02878 288 aaKnown RBP6.76□□□□□ -1.33
VPS29-202ENST00000447578 TSNAXIP1Q2TAA8 658 aa6.76□□□□□ -1.33
VPS29-202ENST00000447578 ANKRD33BA6NCL7 494 aa6.75□□□□□ -1.33
VPS29-202ENST00000447578 NPIPB6E9PJ23 425 aa6.75□□□□□ -1.33
VPS29-202ENST00000447578 LRRN2O75325 713 aa6.75□□□□□ -1.33
VPS29-202ENST00000447578 PDE4BQ07343 736 aa6.75□□□□□ -1.33
VPS29-202ENST00000447578 GAB4Q2WGN9 574 aa6.75□□□□□ -1.33
VPS29-202ENST00000447578 SND1Q7KZF4 910 aaKnown RBP eCLIP6.75□□□□□ -1.334e-6■■■□□ 14.7
VPS29-202ENST00000447578 EPB41L4BQ9H329 900 aa6.75□□□□□ -1.33
VPS29-202ENST00000447578 C19orf44Q9H6X5 657 aa6.75□□□□□ -1.33
VPS29-202ENST00000447578 E9PSI1 815 aa6.74□□□□□ -1.33
VPS29-202ENST00000447578 HPXP02790 462 aa6.74□□□□□ -1.33
VPS29-202ENST00000447578 TMEM253P0C7T8 217 aa6.74□□□□□ -1.33
VPS29-202ENST00000447578 EAPPQ56P03 285 aaPredicted RBP6.74□□□□□ -1.33
VPS29-202ENST00000447578 BNC2Q6ZN30 1099 aaPredicted RBP6.74□□□□□ -1.33
VPS29-202ENST00000447578 ATG14Q6ZNE5 492 aa6.74□□□□□ -1.33
VPS29-202ENST00000447578 SP110Q9HB58 689 aa6.74□□□□□ -1.33
VPS29-202ENST00000447578 DUSP13Q9UII6 198 aa6.74□□□□□ -1.33
VPS29-202ENST00000447578 ADAM30Q9UKF2 790 aa6.74□□□□□ -1.33
VPS29-202ENST00000447578 ETV2O00321 342 aaPredicted RBP6.73□□□□□ -1.33
VPS29-202ENST00000447578 SRFP11831 508 aa6.73□□□□□ -1.33
VPS29-202ENST00000447578 PLCG1P19174 1290 aa6.73□□□□□ -1.33
VPS29-202ENST00000447578 EGR3Q06889 387 aa6.73□□□□□ -1.33
VPS29-202ENST00000447578 DTWD2Q8NBA8 298 aa6.73□□□□□ -1.33
VPS29-202ENST00000447578 PHC3Q8NDX5 983 aa6.73□□□□□ -1.33
VPS29-202ENST00000447578 FAM161BQ96MY7 647 aa6.73□□□□□ -1.33
VPS29-202ENST00000447578 RNF32Q9H0A6 362 aa6.73□□□□□ -1.33
VPS29-202ENST00000447578 PARP2Q9UGN5 583 aa6.73□□□□□ -1.33
VPS29-202ENST00000447578 CTSHP09668 335 aa6.72□□□□□ -1.33
VPS29-202ENST00000447578 TAF1CQ15572 869 aaPredicted RBP6.72□□□□□ -1.33
VPS29-202ENST00000447578 TSPYL5Q86VY4 417 aaPredicted RBP6.72□□□□□ -1.33
VPS29-202ENST00000447578 FAM13CQ8NE31 585 aa6.72□□□□□ -1.33
VPS29-202ENST00000447578 KCNN1Q92952 543 aa6.72□□□□□ -1.33
VPS29-202ENST00000447578 GPR62Q9BZJ7 368 aa6.72□□□□□ -1.33
VPS29-202ENST00000447578 TRIT1Q9H3H1 467 aaKnown RBP6.72□□□□□ -1.33
VPS29-202ENST00000447578 GPATCH2Q9NW75 528 aa6.72□□□□□ -1.33
VPS29-202ENST00000447578 ZGLP1P0C6A0 271 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms