RNA–Protein interactions for RNA: ENST00000443638.1

TM9SF3-202, Transcript of transmembrane 9 superfamily member 3, humanhuman

TSL 3

Gene TM9SF3, Length 868 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-202ENST00000443638 ARPC5LQ9BPX5 153 aa6.89□□□□□ -1.31
TM9SF3-202ENST00000443638 NUCKS1Q9H1E3 243 aaKnown RBP6.89□□□□□ -1.31
TM9SF3-202ENST00000443638 SOX17Q9H6I2 414 aaPredicted RBP6.89□□□□□ -1.31
TM9SF3-202ENST00000443638 KRT82Q9NSB4 513 aa6.89□□□□□ -1.31
TM9SF3-202ENST00000443638 DNAJB12Q9NXW2 375 aaKnown RBP6.89□□□□□ -1.31
TM9SF3-202ENST00000443638 SFMBT1Q9UHJ3 866 aa6.89□□□□□ -1.31
TM9SF3-202ENST00000443638 DNMT3LQ9UJW3 386 aa6.89□□□□□ -1.31
TM9SF3-202ENST00000443638 ADAM30Q9UKF2 790 aa6.89□□□□□ -1.31
TM9SF3-202ENST00000443638 ANKRD34BA5PLL1 514 aa6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 PRPF3O43395 683 aaKnown RBP6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 WIPF1O43516 503 aa6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 BRINP1O60477 761 aa6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 PMS1P54277 932 aaKnown RBP6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 ITKQ08881 620 aa6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 IKBKEQ14164 716 aa6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 PCSK7Q16549 785 aa6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 BBS9Q3SYG4 887 aa6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 SV2CQ496J9 727 aa6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 HDXQ7Z353 690 aa6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 SPATS2Q86XZ4 545 aaKnown RBP6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 PASD1Q8IV76 773 aa6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 DDX54Q8TDD1 881 aaKnown RBP6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 ABHD17AQ96GS6 310 aa6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 SMAD5Q99717 465 aaKnown RBP6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 YIPF4Q9BSR8 244 aa6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 AVENQ9NQS1 362 aaPredicted RBP6.88□□□□□ -1.31
TM9SF3-202ENST00000443638 FAM86C2PA6NEL3 165 aa6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 CHURC1-FNTBB4DL54 471 aa6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 SOX1O00570 391 aaPredicted RBP6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 APBA3O96018 575 aa6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 ITGAVP06756 1048 aa6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 NAT2P11245 290 aa6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 PABPC1P11940 636 aaKnown RBP6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 BPIP17213 487 aa6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 EIF2AK2P19525 551 aaKnown RBP6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 POLR2BP30876 1174 aaKnown RBP6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 SAFB2Q14151 953 aaKnown RBP eCLIP6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 MLC1Q15049 377 aa6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 ZNF227Q86WZ6 799 aa6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 DGKHQ86XP1 1220 aa6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 IPO9Q96P70 1041 aaKnown RBP6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 RHOBTB2Q9BYZ6 727 aa6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 AASDHPPTQ9NRN7 309 aa6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 GNL3LQ9NVN8 582 aaKnown RBP6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 STK17AQ9UEE5 414 aa6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 TRHDEQ9UKU6 1024 aa6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 SPEF1Q9Y4P9 236 aa6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 TNPO3Q9Y5L0 923 aaKnown RBP6.87□□□□□ -1.31
TM9SF3-202ENST00000443638 CCDC189A1A4V9 331 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 SH3BP5O60239 455 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 EPHX1P07099 455 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 CDC27P30260 824 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 GRIA2P42262 883 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 INSM1Q01101 510 aaPredicted RBP6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 PDE4BQ07343 736 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 NEUROD1Q13562 356 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 BRD3Q15059 726 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 SYDE2Q5VT97 1194 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 SPTY2D1Q68D10 685 aaPredicted RBP6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 TRIM46Q7Z4K8 759 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 BRAPQ7Z569 592 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 FGD2Q7Z6J4 655 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 ZBTB46Q86UZ6 589 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 TMEM192Q8IY95 271 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 PNISRQ8TF01 805 aaKnown RBP6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 KLHL25Q9H0H3 589 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 CCDC86Q9H6F5 360 aaKnown RBP6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 SLC52A2Q9HAB3 445 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 SH2B1Q9NRF2 756 aaPredicted RBP6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 SUCOQ9UBS9 1254 aaKnown RBP6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 ZNF180Q9UJW8 692 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 NAGPAQ9UK23 515 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 ATXN7L1Q9ULK2 861 aaPredicted RBP6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 TRIM33Q9UPN9 1127 aa6.86□□□□□ -1.31
TM9SF3-202ENST00000443638 TNKSO95271 1327 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 PRODHO43272 600 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 CBFA2T2O43439 604 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 ZNF862O60290 1169 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 ECEL1O95672 775 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 ASLP04424 464 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 EPHA1P21709 976 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 SCARF1Q14162 830 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 ZNF460Q14592 562 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 DBN1Q16643 649 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.85□□□□□ -1.311e-6■■■■□ 25.2
TM9SF3-202ENST00000443638 GFOD2Q3B7J2 385 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 PPP4R4Q6NUP7 873 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 NSMFQ6X4W1 530 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 CNTD1Q8N815 330 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 ACSF2Q96CM8 615 aaPredicted RBP6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 HAUS7Q99871 368 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 TERF2IPQ9NYB0 399 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 BCCIPQ9P287 314 aaKnown RBP eCLIP6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 APEX2Q9UBZ4 518 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 KLHL3Q9UH77 587 aa6.85□□□□□ -1.31
TM9SF3-202ENST00000443638 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.84□□□□□ -1.31
TM9SF3-202ENST00000443638 GOLGA6CA6NDK9 693 aa6.84□□□□□ -1.31
TM9SF3-202ENST00000443638 GOLGA6BA6NDN3 693 aa6.84□□□□□ -1.31
TM9SF3-202ENST00000443638 K7ESF4 209 aa6.84□□□□□ -1.31
TM9SF3-202ENST00000443638 NEMP1O14524 444 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms