RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 RFX1P22670 979 aa11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 SCARF1Q14162 830 aa11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 CASP8Q14790 479 aa11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 TTC31Q49AM3 519 aaPredicted RBP11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 ZKSCAN3Q9BRR0 538 aa11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 TEX13AQ9BXU3 409 aaPredicted RBP11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 AKAP2Q9Y2D5 859 aa11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 SH3TC1Q8TE82 1336 aa11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 OATP04181 439 aa11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 IARSP41252 1262 aaKnown RBP11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 BRD3Q15059 726 aa11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 POSTNQ15063 836 aa11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 NOM1Q5C9Z4 860 aaKnown RBP11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 PACS2Q86VP3 889 aa11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 AGXT2Q9BYV1 514 aa11.23□□□□□ -0.61
PTCHD4-202ENST00000398738 CTAGE9A4FU28 777 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 CASP14P31944 242 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 MRPS25P82663 173 aaKnown RBP11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 DIP2AQ14689 1571 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 NWD1Q149M9 1564 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 DNAJC21Q5F1R6 531 aaKnown RBP11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 TTC19Q6DKK2 380 aaPredicted RBP11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 GSPT2Q8IYD1 628 aaKnown RBP11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 SLF1Q9BQI6 1058 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 SEC31BQ9NQW1 1179 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 CDC23Q9UJX2 597 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 GUCA1BQ9UMX6 200 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 JCADQ9P266 1359 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 CTAGE15A4D2H0 777 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 GPR37L1O60883 481 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 SLC10A3P09131 477 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 CTAGE8P0CG41 777 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 CD46P15529 392 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 ZAP70P43403 619 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 AMOTQ4VCS5 1084 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 TAF7LQ5H9L4 462 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 CPLX2Q6PUV4 134 aaKnown RBP11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 CTAGE6Q86UF2 777 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 CTAGE4Q8IX94 777 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 MICALL1Q8N3F8 863 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 RDH13Q8NBN7 331 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 MAPK8IP1Q9UQF2 711 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 PALLDQ8WX93 1383 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 hCG_1642624A0A1W2PR95 340 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 IDH1O75874 414 aaKnown RBP11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 NOP2P46087 812 aaKnown RBP11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 SP7Q8TDD2 431 aaPredicted RBP11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 EEF2KMTQ96G04 330 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 CEP126Q9P2H0 1117 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 TRIM10Q9UDY6 481 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 UTYO14607 1347 aa11.22□□□□□ -0.61
PTCHD4-202ENST00000398738 PTPRUQ92729 1446 aa11.21□□□□□ -0.61
PTCHD4-202ENST00000398738 LOC102724159A0A0B4J2E5 919 aa11.21□□□□□ -0.61
PTCHD4-202ENST00000398738 LRRIQ3A6PVS8 624 aaPredicted RBP11.21□□□□□ -0.61
PTCHD4-202ENST00000398738 GPAA1O43292 621 aa11.21□□□□□ -0.61
PTCHD4-202ENST00000398738 SRGAP2O75044 1071 aa11.21□□□□□ -0.61
PTCHD4-202ENST00000398738 NR5A1Q13285 461 aa11.21□□□□□ -0.61
PTCHD4-202ENST00000398738 PWP2Q15269 919 aaKnown RBP11.21□□□□□ -0.61
PTCHD4-202ENST00000398738 ATG9AQ7Z3C6 839 aa11.21□□□□□ -0.61
PTCHD4-202ENST00000398738 FCHSD1Q86WN1 690 aa11.21□□□□□ -0.61
PTCHD4-202ENST00000398738 VPS16Q9H269 839 aa11.21□□□□□ -0.61
PTCHD4-202ENST00000398738 HDAC6Q9UBN7 1215 aa11.21□□□□□ -0.61
PTCHD4-202ENST00000398738 JRKLQ9Y4A0 524 aa11.21□□□□□ -0.61
PTCHD4-202ENST00000398738 CHD2O14647 1828 aaKnown RBP11.21□□□□□ -0.61
PTCHD4-202ENST00000398738 RGPD1P0DJD0 1748 aa11.21□□□□□ -0.62
PTCHD4-202ENST00000398738 GOLGA8AA7E2F4 631 aa11.21□□□□□ -0.62
PTCHD4-202ENST00000398738 MAP2K7O14733 419 aa11.21□□□□□ -0.62
PTCHD4-202ENST00000398738 IBSPP21815 317 aaPredicted RBP11.21□□□□□ -0.62
PTCHD4-202ENST00000398738 GUCY1A2P33402 732 aa11.21□□□□□ -0.62
PTCHD4-202ENST00000398738 PTPAQ15257 358 aa11.21□□□□□ -0.62
PTCHD4-202ENST00000398738 RESP18Q5W5W9 173 aa11.21□□□□□ -0.62
PTCHD4-202ENST00000398738 CYB5R4Q7L1T6 521 aa11.21□□□□□ -0.62
PTCHD4-202ENST00000398738 NUTM2AQ8IVF1 878 aaPredicted RBP11.21□□□□□ -0.62
PTCHD4-202ENST00000398738 CEP112Q8N8E3 955 aa11.21□□□□□ -0.62
PTCHD4-202ENST00000398738 MED15Q96RN5 788 aa11.21□□□□□ -0.62
PTCHD4-202ENST00000398738 POLD4Q9HCU8 107 aa11.21□□□□□ -0.62
PTCHD4-202ENST00000398738 L1RE1Q9UN81 338 aa11.21□□□□□ -0.62
PTCHD4-202ENST00000398738 ADAMTS13Q76LX8 1427 aa11.21□□□□□ -0.62
PTCHD4-202ENST00000398738 IVLP07476 585 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 CSB-PGBD3P0DP91 1061 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 NUP133Q8WUM0 1156 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 ATG3Q9NT62 314 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 HPSEQ9Y251 543 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 RNF40O75150 1001 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 TBX2Q13207 712 aaPredicted RBP11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 LRRC31Q6UY01 552 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 TTLL7Q6ZT98 887 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 MB21D2Q8IYB1 491 aaPredicted RBP11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 RETREG2Q8NC44 543 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 LRRN4Q8WUT4 740 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 RAPGEF4Q8WZA2 1011 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 NUP88Q99567 741 aaPredicted RBP11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 XIRP1Q702N8 1843 aaKnown RBP11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 A6NJR5 290 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 ZBTB43O43298 467 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 GCP02774 474 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 FXR1P51114 621 aaKnown RBP eCLIP11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 ICE2Q659A1 982 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 PLSCR2Q9NRY7 297 aa11.2□□□□□ -0.62
PTCHD4-202ENST00000398738 PCDHB6Q9Y5E3 794 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms