RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 PLXNB2O15031 1838 aa23.54■■□□□ 1.36
LIME1-201ENST00000309546 GJB1P08034 283 aa23.53■■□□□ 1.36
LIME1-201ENST00000309546 GJA8P48165 433 aa23.53■■□□□ 1.36
LIME1-201ENST00000309546 GPRC5AQ8NFJ5 357 aa23.53■■□□□ 1.36
LIME1-201ENST00000309546 C12orf42Q96LP6 360 aa23.53■■□□□ 1.36
LIME1-201ENST00000309546 GUCY1A2P33402 732 aa23.52■■□□□ 1.36
LIME1-201ENST00000309546 RRP1P56182 461 aaKnown RBP23.52■■□□□ 1.36
LIME1-201ENST00000309546 DYNLL2Q96FJ2 89 aa23.52■■□□□ 1.36
LIME1-201ENST00000309546 KIAA1683Q9H0B3 1180 aa23.52■■□□□ 1.36
LIME1-201ENST00000309546 ATP8A2Q9NTI2 1148 aa23.52■■□□□ 1.36
LIME1-201ENST00000309546 VCAM1P19320 739 aa23.51■■□□□ 1.35
LIME1-201ENST00000309546 CCAR1Q8IX12 1150 aaKnown RBP23.51■■□□□ 1.35
LIME1-201ENST00000309546 AMOTL1Q8IY63 956 aa23.51■■□□□ 1.35
LIME1-201ENST00000309546 U2AF1L4Q8WU68 220 aaKnown RBP23.51■■□□□ 1.35
LIME1-201ENST00000309546 GTF3C2Q8WUA4 911 aaPredicted RBP23.51■■□□□ 1.35
LIME1-201ENST00000309546 DDRGK1Q96HY6 314 aa23.51■■□□□ 1.35
LIME1-201ENST00000309546 YTHDC1Q96MU7 727 aaKnown RBP23.51■■□□□ 1.35
LIME1-201ENST00000309546 RBPJLQ9UBG7 517 aa23.51■■□□□ 1.35
LIME1-201ENST00000309546 SWAP70Q9UH65 585 aa23.51■■□□□ 1.35
LIME1-201ENST00000309546 PCDHB15Q9Y5E8 787 aa23.51■■□□□ 1.35
LIME1-201ENST00000309546 SLC4A4Q9Y6R1 1079 aa23.51■■□□□ 1.35
LIME1-201ENST00000309546 CYP2D7A0A087X1C5 515 aa23.5■■□□□ 1.35
LIME1-201ENST00000309546 USP17L15C9J2P7 530 aa23.5■■□□□ 1.35
LIME1-201ENST00000309546 USP17L13C9JLJ4 530 aa23.5■■□□□ 1.35
LIME1-201ENST00000309546 USP17L11C9JVI0 530 aa23.5■■□□□ 1.35
LIME1-201ENST00000309546 USP17L18D6R9N7 530 aa23.5■■□□□ 1.35
LIME1-201ENST00000309546 USP17L22D6RA61 530 aa23.5■■□□□ 1.35
LIME1-201ENST00000309546 USP17L17D6RBQ6 530 aa23.5■■□□□ 1.35
LIME1-201ENST00000309546 USP17L19D6RCP7 530 aa23.5■■□□□ 1.35
LIME1-201ENST00000309546 USP17L20D6RJB6 530 aa23.5■■□□□ 1.35
LIME1-201ENST00000309546 ERVK-9P63128 1117 aa23.5■■□□□ 1.35
LIME1-201ENST00000309546 ERVK-24P63145 666 aa23.5■■□□□ 1.35
LIME1-201ENST00000309546 USP17L24Q0WX57 530 aa23.5■■□□□ 1.35
LIME1-201ENST00000309546 PUS7LQ9H0K6 701 aaKnown RBP23.5■■□□□ 1.35
LIME1-201ENST00000309546 CWC22Q9HCG8 908 aaKnown RBP23.49■■□□□ 1.35
LIME1-201ENST00000309546 GJD2Q9UKL4 321 aa23.49■■□□□ 1.35
LIME1-201ENST00000309546 SMIM22K7EJ46 135 aa23.48■■□□□ 1.35
LIME1-201ENST00000309546 HMGCRP04035 888 aa23.48■■□□□ 1.35
LIME1-201ENST00000309546 CYP2B6P20813 491 aa23.48■■□□□ 1.35
LIME1-201ENST00000309546 Q3C1V9 767 aa23.48■■□□□ 1.35
LIME1-201ENST00000309546 CATSPERGQ6ZRH7 1159 aa23.48■■□□□ 1.35
LIME1-201ENST00000309546 TMEM179Q6ZVK1 233 aa23.48■■□□□ 1.35
LIME1-201ENST00000309546 DEFB118Q96PH6 123 aa23.48■■□□□ 1.35
LIME1-201ENST00000309546 PORCNQ9H237 461 aa23.48■■□□□ 1.35
LIME1-201ENST00000309546 RPAP3Q9H6T3 665 aaPredicted RBP23.48■■□□□ 1.35
LIME1-201ENST00000309546 USP17L12C9JPN9 530 aa23.47■■□□□ 1.35
LIME1-201ENST00000309546 USP17L21D6R901 530 aa23.47■■□□□ 1.35
LIME1-201ENST00000309546 SLC34A2O95436 690 aa23.47■■□□□ 1.35
LIME1-201ENST00000309546 SGPL1O95470 568 aa23.47■■□□□ 1.35
LIME1-201ENST00000309546 MAPK4P31152 587 aa23.47■■□□□ 1.35
LIME1-201ENST00000309546 POTEEQ6S8J3 1075 aa23.47■■□□□ 1.35
LIME1-201ENST00000309546 CLEC10AQ8IUN9 316 aa23.47■■□□□ 1.35
LIME1-201ENST00000309546 KBTBD3Q8NAB2 608 aa23.47■■□□□ 1.35
LIME1-201ENST00000309546 NUDT12Q9BQG2 462 aa23.47■■□□□ 1.35
LIME1-201ENST00000309546 A0A1W2PRG0 241 aa23.46■■□□□ 1.35
LIME1-201ENST00000309546 AKR1B1P15121 316 aa23.46■■□□□ 1.35
LIME1-201ENST00000309546 C12orf60Q5U649 245 aa23.46■■□□□ 1.35
LIME1-201ENST00000309546 SOCS4Q8WXH5 440 aa23.46■■□□□ 1.35
LIME1-201ENST00000309546 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.46■■□□□ 1.357e-7■■■■■ 54.9
LIME1-201ENST00000309546 FARP2O94887 1054 aaPredicted RBP23.45■■□□□ 1.34
LIME1-201ENST00000309546 TFRCP02786 760 aaKnown RBP23.45■■□□□ 1.34
LIME1-201ENST00000309546 CDK8P49336 464 aa23.45■■□□□ 1.34
LIME1-201ENST00000309546 TRIM32Q13049 653 aa23.45■■□□□ 1.34
LIME1-201ENST00000309546 WDR78Q5VTH9 848 aa23.45■■□□□ 1.34
LIME1-201ENST00000309546 GPR142Q7Z601 462 aa23.45■■□□□ 1.34
LIME1-201ENST00000309546 TRIB2Q92519 343 aa23.45■■□□□ 1.34
LIME1-201ENST00000309546 GCC1Q96CN9 775 aa23.45■■□□□ 1.34
LIME1-201ENST00000309546 CRBNQ96SW2 442 aa23.45■■□□□ 1.34
LIME1-201ENST00000309546 PAK6Q9NQU5 681 aaPredicted RBP23.45■■□□□ 1.34
LIME1-201ENST00000309546 RABGAP1Q9Y3P9 1069 aa23.45■■□□□ 1.34
LIME1-201ENST00000309546 CNMDO75829 334 aa23.44■■□□□ 1.34
LIME1-201ENST00000309546 CCNA1P78396 465 aa23.44■■□□□ 1.34
LIME1-201ENST00000309546 ICA1Q05084 483 aa23.44■■□□□ 1.34
LIME1-201ENST00000309546 CTR9Q6PD62 1173 aa23.44■■□□□ 1.34
LIME1-201ENST00000309546 C16orf86Q6ZW13 317 aa23.44■■□□□ 1.34
LIME1-201ENST00000309546 PLEKHH3Q7Z736 793 aa23.44■■□□□ 1.34
LIME1-201ENST00000309546 APPBP2Q92624 585 aa23.44■■□□□ 1.34
LIME1-201ENST00000309546 DPF3Q92784 378 aa23.44■■□□□ 1.34
LIME1-201ENST00000309546 TANGO6Q9C0B7 1094 aa23.44■■□□□ 1.34
LIME1-201ENST00000309546 ARHGEF10LQ9HCE6 1279 aa23.44■■□□□ 1.34
LIME1-201ENST00000309546 ARPP21Q9UBL0 812 aaPredicted RBP23.44■■□□□ 1.34
LIME1-201ENST00000309546 SPDYE16A6NNV3 312 aaPredicted RBP23.43■■□□□ 1.34
LIME1-201ENST00000309546 RNF113AO15541 343 aaKnown RBP23.43■■□□□ 1.34
LIME1-201ENST00000309546 OTUD7AQ8TE49 926 aaPredicted RBP23.43■■□□□ 1.34
LIME1-201ENST00000309546 STRBPQ96SI9 672 aaKnown RBP23.43■■□□□ 1.34
LIME1-201ENST00000309546 TTC41PQ6P2S7 1318 aa23.42■■□□□ 1.34
LIME1-201ENST00000309546 RGS2P41220 211 aa23.42■■□□□ 1.34
LIME1-201ENST00000309546 STK11IPQ8N1F8 1099 aa23.42■■□□□ 1.34
LIME1-201ENST00000309546 OSBP2Q969R2 916 aa23.42■■□□□ 1.34
LIME1-201ENST00000309546 CCDC17Q96LX7 622 aa23.42■■□□□ 1.34
LIME1-201ENST00000309546 HTATIP2Q9BUP3 242 aa23.42■■□□□ 1.34
LIME1-201ENST00000309546 HMX1Q9NP08 348 aaPredicted RBP23.42■■□□□ 1.34
LIME1-201ENST00000309546 ERC2O15083 957 aa23.41■■□□□ 1.34
LIME1-201ENST00000309546 ZFYP08048 801 aaPredicted RBP23.41■■□□□ 1.34
LIME1-201ENST00000309546 ZKSCAN1P17029 563 aaPredicted RBP23.41■■□□□ 1.34
LIME1-201ENST00000309546 ATP2B2Q01814 1243 aa23.41■■□□□ 1.34
LIME1-201ENST00000309546 UBE2Q1Q7Z7E8 422 aa23.41■■□□□ 1.34
LIME1-201ENST00000309546 SPICE1Q8N0Z3 855 aa23.41■■□□□ 1.34
LIME1-201ENST00000309546 SH2D4AQ9H788 454 aa23.41■■□□□ 1.34
LIME1-201ENST00000309546 BTBD7Q9P203 1132 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms