RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 LRRC8CQ8TDW0 803 aa15.29■□□□□ 0.04
CSPG4-201ENST00000308508 ZNF219Q9P2Y4 722 aaPredicted RBP15.29■□□□□ 0.04
CSPG4-201ENST00000308508 SCOCQ9UIL1 159 aa15.29■□□□□ 0.04
CSPG4-201ENST00000308508 PRG4Q92954 1404 aaPredicted RBP15.29■□□□□ 0.04
CSPG4-201ENST00000308508 MMEL1Q495T6 779 aa15.29■□□□□ 0.04
CSPG4-201ENST00000308508 LMBR1LQ6UX01 489 aa15.29■□□□□ 0.04
CSPG4-201ENST00000308508 XAGE3Q8WTP9 111 aa15.29■□□□□ 0.04
CSPG4-201ENST00000308508 CCDC197Q8NCU1 140 aa15.28■□□□□ 0.04
CSPG4-201ENST00000308508 C2CD5Q86YS7 1000 aa15.28■□□□□ 0.04
CSPG4-201ENST00000308508 TSC1Q92574 1164 aa15.28■□□□□ 0.04
CSPG4-201ENST00000308508 SART1O43290 800 aaKnown RBP15.28■□□□□ 0.04
CSPG4-201ENST00000308508 JADE1Q6IE81 842 aa15.28■□□□□ 0.04
CSPG4-201ENST00000308508 SCINQ9Y6U3 715 aa15.28■□□□□ 0.04
CSPG4-201ENST00000308508 NBPF14Q5TI25 921 aa15.28■□□□□ 0.04
CSPG4-201ENST00000308508 TMOD4Q9NZQ9 345 aa15.28■□□□□ 0.04
CSPG4-201ENST00000308508 ABCC5O15440 1437 aa15.28■□□□□ 0.04
CSPG4-201ENST00000308508 KIF11P52732 1056 aa15.28■□□□□ 0.04
CSPG4-201ENST00000308508 RUNDC3BQ96NL0 473 aa15.28■□□□□ 0.04
CSPG4-201ENST00000308508 ANGEL1Q9UNK9 670 aaKnown RBP15.28■□□□□ 0.04
CSPG4-201ENST00000308508 RRP15Q9Y3B9 282 aaKnown RBP15.28■□□□□ 0.04
CSPG4-201ENST00000308508 PIK3AP1Q6ZUJ8 805 aa15.28■□□□□ 0.04
CSPG4-201ENST00000308508 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.28■□□□□ 0.04
CSPG4-201ENST00000308508 RPSAP08865 295 aaKnown RBP15.27■□□□□ 0.04
CSPG4-201ENST00000308508 HARSP12081 509 aaKnown RBP15.27■□□□□ 0.04
CSPG4-201ENST00000308508 TTC38Q5R3I4 469 aa15.27■□□□□ 0.04
CSPG4-201ENST00000308508 RRAGAQ7L523 313 aa15.27■□□□□ 0.04
CSPG4-201ENST00000308508 ARHGEF35A5YM69 484 aa15.27■□□□□ 0.04
CSPG4-201ENST00000308508 ADCY8P40145 1251 aa15.27■□□□□ 0.04
CSPG4-201ENST00000308508 CCDC124Q96CT7 223 aaKnown RBP15.27■□□□□ 0.04
CSPG4-201ENST00000308508 NRBF2Q96F24 287 aa15.27■□□□□ 0.04
CSPG4-201ENST00000308508 SETDB2Q96T68 719 aa15.27■□□□□ 0.04
CSPG4-201ENST00000308508 EIF2AK4Q9P2K8 1649 aaKnown RBP15.27■□□□□ 0.04
CSPG4-201ENST00000308508 KCNK3O14649 394 aa15.27■□□□□ 0.03
CSPG4-201ENST00000308508 IQSEC3Q9UPP2 1182 aaPredicted RBP15.27■□□□□ 0.03
CSPG4-201ENST00000308508 ATP8B1O43520 1251 aa15.27■□□□□ 0.03
CSPG4-201ENST00000308508 CCT5P48643 541 aa15.27■□□□□ 0.03
CSPG4-201ENST00000308508 KLHDC4Q8TBB5 520 aa15.27■□□□□ 0.03
CSPG4-201ENST00000308508 PSPC1Q8WXF1 523 aaKnown RBP15.27■□□□□ 0.03
CSPG4-201ENST00000308508 SEPT8Q92599 483 aa15.27■□□□□ 0.03
CSPG4-201ENST00000308508 AQRO60306 1485 aaKnown RBP eCLIP15.27■□□□□ 0.03
CSPG4-201ENST00000308508 BBOF1Q8ND07 529 aa15.27■□□□□ 0.03
CSPG4-201ENST00000308508 ZNF622Q969S3 477 aaKnown RBP eCLIP15.27■□□□□ 0.03
CSPG4-201ENST00000308508 XPO4Q9C0E2 1151 aaKnown RBP15.26■□□□□ 0.03
CSPG4-201ENST00000308508 PCF11O94913 1555 aaKnown RBP15.26■□□□□ 0.03
CSPG4-201ENST00000308508 GSTA1P08263 222 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 GSTA2P09210 222 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 TCP1P17987 556 aaKnown RBP15.26■□□□□ 0.03
CSPG4-201ENST00000308508 IL9RQ01113 521 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 NLRP3Q96P20 1036 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 MRPL44Q9H9J2 332 aaKnown RBP15.26■□□□□ 0.03
CSPG4-201ENST00000308508 ARMC9Q7Z3E5 817 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 OR8K1Q8NGG5 319 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 SH2D4AQ9H788 454 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 GCNT3O95395 438 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 NYXQ9GZU5 481 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 MYO1AQ9UBC5 1043 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 YWHAEP62258 255 aaKnown RBP15.26■□□□□ 0.03
CSPG4-201ENST00000308508 PLCB4Q15147 1175 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 MIGA1Q8NAN2 632 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 HELBQ8NG08 1087 aaPredicted RBP15.26■□□□□ 0.03
CSPG4-201ENST00000308508 CENPKQ9BS16 269 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 TMED1Q13445 227 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 COPS6Q7L5N1 327 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 AOX1Q06278 1338 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 SYNJ1O43426 1573 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 F8W031 263 aaPredicted RBP15.26■□□□□ 0.03
CSPG4-201ENST00000308508 SLC27A2O14975 620 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 PPP2R5BQ15173 497 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 SPZ1Q9BXG8 430 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 DNM3Q9UQ16 869 aa15.26■□□□□ 0.03
CSPG4-201ENST00000308508 RPRD2Q5VT52 1461 aaKnown RBP15.26■□□□□ 0.03
CSPG4-201ENST00000308508 ADKP55263 362 aaKnown RBP15.25■□□□□ 0.03
CSPG4-201ENST00000308508 ABTB1Q969K4 478 aaPredicted RBP15.25■□□□□ 0.03
CSPG4-201ENST00000308508 PDE11AQ9HCR9 933 aa15.25■□□□□ 0.03
CSPG4-201ENST00000308508 IFT88Q13099 833 aa15.25■□□□□ 0.03
CSPG4-201ENST00000308508 CARD10Q9BWT7 1032 aa15.25■□□□□ 0.03
CSPG4-201ENST00000308508 LDHBP07195 334 aaKnown RBP15.25■□□□□ 0.03
CSPG4-201ENST00000308508 RAB20Q9NX57 234 aa15.25■□□□□ 0.03
CSPG4-201ENST00000308508 PHF8Q9UPP1 1060 aa15.25■□□□□ 0.03
CSPG4-201ENST00000308508 STAT1P42224 750 aa15.25■□□□□ 0.03
CSPG4-201ENST00000308508 RABGGTAQ92696 567 aa15.25■□□□□ 0.03
CSPG4-201ENST00000308508 CALCRLQ16602 461 aa15.25■□□□□ 0.03
CSPG4-201ENST00000308508 HERC4Q5GLZ8 1057 aaPredicted RBP15.25■□□□□ 0.03
CSPG4-201ENST00000308508 TRIM37O94972 964 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 P4HA1P13674 534 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 PA2G4Q9UQ80 394 aaKnown RBP15.24■□□□□ 0.03
CSPG4-201ENST00000308508 TTLL3Q9Y4R7 772 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 PPP2R2CQ9Y2T4 447 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 PALM3A6NDB9 673 aaPredicted RBP15.24■□□□□ 0.03
CSPG4-201ENST00000308508 TMTC3Q6ZXV5 915 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 LRRC8AQ8IWT6 810 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 EFHD1Q9BUP0 239 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 ANXA1P04083 346 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 SKIP12755 728 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 LINS1Q8NG48 757 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 TRIM56Q9BRZ2 755 aaKnown RBP15.24■□□□□ 0.03
CSPG4-201ENST00000308508 FAM207AQ9NSI2 230 aaPredicted RBP15.24■□□□□ 0.03
CSPG4-201ENST00000308508 EXOC3O60645 756 aa15.24■□□□□ 0.03
CSPG4-201ENST00000308508 GARSP41250 739 aaKnown RBP15.24■□□□□ 0.03
CSPG4-201ENST00000308508 TFCP2Q12800 502 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms