RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 CUTAO60888 179 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 TTC38Q5R3I4 469 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 VPS36Q86VN1 386 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 CBX8Q9HC52 389 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 SRP68Q9UHB9 627 aaKnown RBP12.44□□□□□ -0.42
HDAC6-228ENST00000486227 NBPF26B4DH59 902 aa12.43□□□□□ -0.42
HDAC6-228ENST00000486227 MYL5Q02045 173 aa12.43□□□□□ -0.42
HDAC6-228ENST00000486227 NBPF10Q6P3W6 841 aaKnown RBP12.43□□□□□ -0.42
HDAC6-228ENST00000486227 NBPF15Q8N660 670 aa12.43□□□□□ -0.42
HDAC6-228ENST00000486227 TMOD4Q9NZQ9 345 aa12.43□□□□□ -0.42
HDAC6-228ENST00000486227 SNAP23O00161 211 aa12.43□□□□□ -0.42
HDAC6-228ENST00000486227 NECTIN1Q15223 517 aa12.43□□□□□ -0.42
HDAC6-228ENST00000486227 SLFNL1Q499Z3 407 aa12.43□□□□□ -0.42
HDAC6-228ENST00000486227 ADD2P35612 726 aa12.43□□□□□ -0.42
HDAC6-228ENST00000486227 ELF2Q15723 593 aa12.43□□□□□ -0.42
HDAC6-228ENST00000486227 FANCBQ8NB91 859 aa12.43□□□□□ -0.42
HDAC6-228ENST00000486227 ARPP21Q9UBL0 812 aaPredicted RBP12.43□□□□□ -0.42
HDAC6-228ENST00000486227 TTF2Q9UNY4 1162 aaKnown RBP12.43□□□□□ -0.42
HDAC6-228ENST00000486227 PALLDQ8WX93 1383 aa12.43□□□□□ -0.42
HDAC6-228ENST00000486227 GIMAP7Q8NHV1 300 aa12.43□□□□□ -0.42
HDAC6-228ENST00000486227 KIAA1210Q9ULL0 1709 aa12.43□□□□□ -0.42
HDAC6-228ENST00000486227 ARHGEF10LQ9HCE6 1279 aa12.42□□□□□ -0.42
HDAC6-228ENST00000486227 AKR1B10O60218 316 aa12.42□□□□□ -0.42
HDAC6-228ENST00000486227 LARGE1O95461 756 aa12.42□□□□□ -0.42
HDAC6-228ENST00000486227 ATP2B4P23634 1241 aa12.42□□□□□ -0.42
HDAC6-228ENST00000486227 CLEC17AQ6ZS10 378 aa12.42□□□□□ -0.42
HDAC6-228ENST00000486227 ZSCAN10Q96SZ4 725 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-228ENST00000486227 BIN2Q9UBW5 565 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-228ENST00000486227 NRKQ7Z2Y5 1582 aa12.42□□□□□ -0.42
HDAC6-228ENST00000486227 GOLGA1Q92805 767 aa12.42□□□□□ -0.42
HDAC6-228ENST00000486227 ZSWIM4Q9H7M6 989 aa12.42□□□□□ -0.42
HDAC6-228ENST00000486227 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.42□□□□□ -0.422e-6■■■□□ 14.6
HDAC6-228ENST00000486227 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.42□□□□□ -0.42
HDAC6-228ENST00000486227 PRKAB2O43741 272 aa12.42□□□□□ -0.42
HDAC6-228ENST00000486227 EAPPQ56P03 285 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-228ENST00000486227 ECM2O94769 699 aaPredicted RBP12.41□□□□□ -0.42
HDAC6-228ENST00000486227 CAPN2P17655 700 aa12.41□□□□□ -0.42
HDAC6-228ENST00000486227 CETN1Q12798 172 aa12.41□□□□□ -0.42
HDAC6-228ENST00000486227 USP40Q9NVE5 1235 aa12.41□□□□□ -0.42
HDAC6-228ENST00000486227 NR1I2O75469 434 aa12.41□□□□□ -0.42
HDAC6-228ENST00000486227 ARID4AP29374 1257 aaPredicted RBP12.41□□□□□ -0.42
HDAC6-228ENST00000486227 DOK7Q18PE1 504 aa12.41□□□□□ -0.42
HDAC6-228ENST00000486227 SSR1P43307 286 aaKnown RBP12.41□□□□□ -0.42
HDAC6-228ENST00000486227 TUBB4BP68371 445 aa12.41□□□□□ -0.42
HDAC6-228ENST00000486227 RBM6P78332 1123 aaKnown RBP12.41□□□□□ -0.42
HDAC6-228ENST00000486227 TNFAIP1Q13829 316 aa12.41□□□□□ -0.42
HDAC6-228ENST00000486227 MCM6Q14566 821 aa12.41□□□□□ -0.42
HDAC6-228ENST00000486227 MMRN2Q9H8L6 949 aa12.41□□□□□ -0.42
HDAC6-228ENST00000486227 ZMYM6O95789 1325 aa12.41□□□□□ -0.42
HDAC6-228ENST00000486227 BTBD18B2RXH4 712 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 ERLIN2O94905 339 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 DYNLL1P63167 89 aaKnown RBP12.4□□□□□ -0.42
HDAC6-228ENST00000486227 FCHSD1Q86WN1 690 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 FBXO18Q8NFZ0 1043 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 MAPK8IP1Q9UQF2 711 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 ZC3H13Q5T200 1668 aaKnown RBP12.4□□□□□ -0.42
HDAC6-228ENST00000486227 PREX1Q8TCU6 1659 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 SLC1A4P43007 532 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 RASGRF1Q13972 1273 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 STAMQ92783 540 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 PIH1D3Q9NQM4 214 aaKnown RBP12.4□□□□□ -0.42
HDAC6-228ENST00000486227 VWDEQ8N2E2 1590 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 TECPR2O15040 1411 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 CCNT1O60563 726 aaKnown RBP12.4□□□□□ -0.42
HDAC6-228ENST00000486227 TXKP42681 527 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 ZYXQ15942 572 aaKnown RBP12.4□□□□□ -0.42
HDAC6-228ENST00000486227 ADALQ6DHV7 355 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 C10orf67Q8IYJ2 551 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 KIAA1524Q8TCG1 905 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 FRMPD1Q5SYB0 1578 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 SERPINB2P05120 415 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 CYP19A1P11511 503 aaPredicted RBP12.4□□□□□ -0.42
HDAC6-228ENST00000486227 SCNN1DP51172 638 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 PRKG1Q13976 671 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 APOA5Q6Q788 366 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 TEKT1Q969V4 418 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 SPAG5Q96R06 1193 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 CENPHQ9H3R5 247 aa12.4□□□□□ -0.42
HDAC6-228ENST00000486227 MCAMP43121 646 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 NOSTRINQ8IVI9 506 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 GPATCH11Q8N954 259 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 NSUN7Q8NE18 718 aaKnown RBP12.39□□□□□ -0.43
HDAC6-228ENST00000486227 DIP2BQ9P265 1576 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 LCORLQ8N3X6 602 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 PNMA1Q8ND90 353 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 RSPH14Q9UHP6 348 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 PYCARDQ9ULZ3 195 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 IVNS1ABPQ9Y6Y0 642 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 MED23Q9ULK4 1368 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 PAFAH1B1P43034 410 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 BTDP43251 543 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 PLCD1P51178 756 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 NONOQ15233 471 aaKnown RBP eCLIP12.39□□□□□ -0.43
HDAC6-228ENST00000486227 MICALCLQ6ZW33 695 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 KIAA0825Q8IV33 1275 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 CEP112Q8N8E3 955 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 EVCP57679 992 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 UBXN1Q04323 297 aa12.39□□□□□ -0.43
HDAC6-228ENST00000486227 TTC31Q49AM3 519 aaPredicted RBP12.39□□□□□ -0.43
HDAC6-228ENST00000486227 IQSEC2Q5JU85 1478 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms