RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 RIOK1Q9BRS2 568 aaKnown RBP19.63■□□□□ 0.73
TRIM28-206ENST00000595974 ZCCHC17Q9NP64 241 aaKnown RBP19.63■□□□□ 0.73
TRIM28-206ENST00000595974 MAGEB6P1A0A0J9YX57 407 aa19.62■□□□□ 0.73
TRIM28-206ENST00000595974 HLA-DOAP06340 250 aa19.62■□□□□ 0.73
TRIM28-206ENST00000595974 SLURP2P0DP57 97 aa19.62■□□□□ 0.73
TRIM28-206ENST00000595974 PTPRAP18433 802 aa19.62■□□□□ 0.73
TRIM28-206ENST00000595974 ADD2P35612 726 aa19.62■□□□□ 0.73
TRIM28-206ENST00000595974 USP5P45974 858 aa19.62■□□□□ 0.73
TRIM28-206ENST00000595974 ZNF296Q8WUU4 475 aaPredicted RBP19.62■□□□□ 0.73
TRIM28-206ENST00000595974 GCC1Q96CN9 775 aa19.62■□□□□ 0.73
TRIM28-206ENST00000595974 TTC41PQ6P2S7 1318 aa19.61■□□□□ 0.73
TRIM28-206ENST00000595974 FAM196BA6NMK8 535 aa19.61■□□□□ 0.73
TRIM28-206ENST00000595974 CRHR2Q13324 411 aa19.61■□□□□ 0.73
TRIM28-206ENST00000595974 METTL16Q86W50 562 aaKnown RBP19.61■□□□□ 0.73
TRIM28-206ENST00000595974 CRNKL1Q9BZJ0 848 aaKnown RBP19.61■□□□□ 0.73
TRIM28-206ENST00000595974 R3HDMLQ9H3Y0 253 aa19.61■□□□□ 0.73
TRIM28-206ENST00000595974 ZBTB47Q9UFB7 747 aaPredicted RBP19.61■□□□□ 0.73
TRIM28-206ENST00000595974 PALD1Q9ULE6 856 aa19.61■□□□□ 0.73
TRIM28-206ENST00000595974 CXCL11O14625 94 aa19.6■□□□□ 0.73
TRIM28-206ENST00000595974 FKTNO75072 461 aa19.6■□□□□ 0.73
TRIM28-206ENST00000595974 DGKZQ13574 1117 aa19.6■□□□□ 0.73
TRIM28-206ENST00000595974 TAF1CQ15572 869 aaPredicted RBP19.6■□□□□ 0.73
TRIM28-206ENST00000595974 ZSCAN25Q6NSZ9 544 aa19.6■□□□□ 0.73
TRIM28-206ENST00000595974 FOXP4Q8IVH2 680 aaPredicted RBP19.6■□□□□ 0.73
TRIM28-206ENST00000595974 FAM43AQ8N2R8 423 aa19.6■□□□□ 0.73
TRIM28-206ENST00000595974 TRIM34Q9BYJ4 488 aa19.6■□□□□ 0.73
TRIM28-206ENST00000595974 SAP30BPQ9UHR5 308 aaKnown RBP19.6■□□□□ 0.73
TRIM28-206ENST00000595974 SUPT16HQ9Y5B9 1047 aaKnown RBP19.6■□□□□ 0.73
TRIM28-206ENST00000595974 MYH8P13535 1937 aa19.6■□□□□ 0.73
TRIM28-206ENST00000595974 BAZ2AQ9UIF9 1905 aaKnown RBP19.6■□□□□ 0.73
TRIM28-206ENST00000595974 BTBD19C9JJ37 291 aa19.59■□□□□ 0.73
TRIM28-206ENST00000595974 UBE3CQ15386 1083 aa19.59■□□□□ 0.73
TRIM28-206ENST00000595974 CTU1Q7Z7A3 348 aaKnown RBP19.59■□□□□ 0.73
TRIM28-206ENST00000595974 CRACR2BQ8N4Y2 399 aaPredicted RBP19.59■□□□□ 0.73
TRIM28-206ENST00000595974 MCOLN1Q9GZU1 580 aa19.59■□□□□ 0.73
TRIM28-206ENST00000595974 DNAJC18Q9H819 358 aa19.59■□□□□ 0.73
TRIM28-206ENST00000595974 ZHX2Q9Y6X8 837 aa19.59■□□□□ 0.73
TRIM28-206ENST00000595974 LOC285556D6RIA3 1793 aa19.59■□□□□ 0.73
TRIM28-206ENST00000595974 ERC2O15083 957 aa19.58■□□□□ 0.72
TRIM28-206ENST00000595974 CAP2P40123 477 aa19.58■□□□□ 0.72
TRIM28-206ENST00000595974 TSHZ3Q63HK5 1081 aa19.58■□□□□ 0.72
TRIM28-206ENST00000595974 ANKRD23Q86SG2 305 aa19.58■□□□□ 0.72
TRIM28-206ENST00000595974 EXOC6Q8TAG9 804 aa19.58■□□□□ 0.72
TRIM28-206ENST00000595974 ABHD8Q96I13 439 aa19.58■□□□□ 0.72
TRIM28-206ENST00000595974 TBC1D2Q9BYX2 928 aa19.58■□□□□ 0.72
TRIM28-206ENST00000595974 EHD4Q9H223 541 aa19.58■□□□□ 0.72
TRIM28-206ENST00000595974 ZFYVE28Q9HCC9 887 aa19.58■□□□□ 0.72
TRIM28-206ENST00000595974 AFG3L2Q9Y4W6 797 aa19.58■□□□□ 0.72
TRIM28-206ENST00000595974 A0A0G2JLL6 359 aaPredicted RBP19.57■□□□□ 0.72
TRIM28-206ENST00000595974 GLRX3O76003 335 aaKnown RBP19.57■□□□□ 0.72
TRIM28-206ENST00000595974 PRRT2Q7Z6L0 340 aaPredicted RBP19.57■□□□□ 0.72
TRIM28-206ENST00000595974 TTC6Q86TZ1 520 aa19.57■□□□□ 0.72
TRIM28-206ENST00000595974 LCORLQ8N3X6 602 aa19.57■□□□□ 0.72
TRIM28-206ENST00000595974 KBTBD3Q8NAB2 608 aa19.57■□□□□ 0.72
TRIM28-206ENST00000595974 SALL3Q9BXA9 1300 aa19.56■□□□□ 0.72
TRIM28-206ENST00000595974 MX1P20591 662 aa19.56■□□□□ 0.72
TRIM28-206ENST00000595974 MOGSQ13724 837 aa19.56■□□□□ 0.72
TRIM28-206ENST00000595974 ANKRD45Q5TZF3 282 aa19.56■□□□□ 0.72
TRIM28-206ENST00000595974 PI4K2BQ8TCG2 481 aa19.56■□□□□ 0.72
TRIM28-206ENST00000595974 RWDD1Q9H446 243 aaPredicted RBP19.56■□□□□ 0.72
TRIM28-206ENST00000595974 GINM1Q9NU53 330 aa19.56■□□□□ 0.72
TRIM28-206ENST00000595974 SERPINB13Q9UIV8 391 aa19.56■□□□□ 0.72
TRIM28-206ENST00000595974 MBD4O95243 580 aa19.55■□□□□ 0.72
TRIM28-206ENST00000595974 ASNSP08243 561 aa19.55■□□□□ 0.72
TRIM28-206ENST00000595974 RRP1BQ14684 758 aaKnown RBP19.55■□□□□ 0.72
TRIM28-206ENST00000595974 SLC4A8Q2Y0W8 1093 aa19.55■□□□□ 0.72
TRIM28-206ENST00000595974 FASTKD5Q7L8L6 764 aaKnown RBP19.55■□□□□ 0.72
TRIM28-206ENST00000595974 OTUD7AQ8TE49 926 aaPredicted RBP19.55■□□□□ 0.72
TRIM28-206ENST00000595974 ARMT1Q9H993 441 aa19.55■□□□□ 0.72
TRIM28-206ENST00000595974 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.55■□□□□ 0.72
TRIM28-206ENST00000595974 TRIM75PA6NK02 468 aa19.54■□□□□ 0.72
TRIM28-206ENST00000595974 ZFYP08048 801 aaPredicted RBP19.54■□□□□ 0.72
TRIM28-206ENST00000595974 PKN2Q16513 984 aaKnown RBP19.54■□□□□ 0.72
TRIM28-206ENST00000595974 LRRFIP1Q32MZ4 808 aaKnown RBP19.54■□□□□ 0.72
TRIM28-206ENST00000595974 SLFNL1Q499Z3 407 aa19.54■□□□□ 0.72
TRIM28-206ENST00000595974 SMC5Q8IY18 1101 aa19.54■□□□□ 0.72
TRIM28-206ENST00000595974 SDR42E1Q8WUS8 393 aa19.54■□□□□ 0.72
TRIM28-206ENST00000595974 ERO1AQ96HE7 468 aa19.54■□□□□ 0.72
TRIM28-206ENST00000595974 DCP1AQ9NPI6 582 aaPredicted RBP19.54■□□□□ 0.72
TRIM28-206ENST00000595974 USP17L5A8MUK1 530 aa19.53■□□□□ 0.72
TRIM28-206ENST00000595974 PDHXO00330 501 aa19.53■□□□□ 0.72
TRIM28-206ENST00000595974 TLR2O60603 784 aa19.53■□□□□ 0.72
TRIM28-206ENST00000595974 POLR3DP05423 398 aaPredicted RBP19.53■□□□□ 0.72
TRIM28-206ENST00000595974 SP3Q02447 781 aa19.53■□□□□ 0.72
TRIM28-206ENST00000595974 CCDC84Q86UT8 332 aaPredicted RBP19.53■□□□□ 0.72
TRIM28-206ENST00000595974 ZNF280CQ8ND82 737 aa19.53■□□□□ 0.72
TRIM28-206ENST00000595974 AS3MTQ9HBK9 375 aa19.53■□□□□ 0.72
TRIM28-206ENST00000595974 ATP8A2Q9NTI2 1148 aa19.53■□□□□ 0.72
TRIM28-206ENST00000595974 MCM9Q9NXL9 1143 aa19.53■□□□□ 0.72
TRIM28-206ENST00000595974 CAPN15O75808 1086 aa19.52■□□□□ 0.72
TRIM28-206ENST00000595974 CHGBP05060 677 aa19.52■□□□□ 0.72
TRIM28-206ENST00000595974 GPAT2Q6NUI2 795 aa19.52■□□□□ 0.72
TRIM28-206ENST00000595974 TATDN1Q6P1N9 297 aa19.52■□□□□ 0.72
TRIM28-206ENST00000595974 GADL1Q6ZQY3 521 aa19.52■□□□□ 0.72
TRIM28-206ENST00000595974 APPBP2Q92624 585 aa19.52■□□□□ 0.72
TRIM28-206ENST00000595974 PARK7Q99497 189 aaKnown RBP19.52■□□□□ 0.72
TRIM28-206ENST00000595974 TAOK2Q9UL54 1235 aa19.52■□□□□ 0.72
TRIM28-206ENST00000595974 ZBTB21Q9ULJ3 1066 aa19.52■□□□□ 0.72
TRIM28-206ENST00000595974 SLC45A1Q9Y2W3 748 aa19.52■□□□□ 0.72
TRIM28-206ENST00000595974 GDF11O95390 407 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms