RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 GOLGB1Q14789 3259 aaKnown RBP18.01■□□□□ 0.47
SS18-215ENST00000580642 DDX60LQ5H9U9 1706 aaKnown RBP18.01■□□□□ 0.47
SS18-215ENST00000580642 LIFRP42702 1097 aa18.01■□□□□ 0.47
SS18-215ENST00000580642 PLCD1P51178 756 aa18.01■□□□□ 0.47
SS18-215ENST00000580642 NFIAQ12857 509 aa18.01■□□□□ 0.47
SS18-215ENST00000580642 PICALMQ13492 652 aa18.01■□□□□ 0.47
SS18-215ENST00000580642 KIF4BQ2VIQ3 1234 aa18.01■□□□□ 0.47
SS18-215ENST00000580642 IQCA1Q86XH1 822 aa18.01■□□□□ 0.47
SS18-215ENST00000580642 ADARB2Q9NS39 739 aaKnown RBP18.01■□□□□ 0.47
SS18-215ENST00000580642 ZSWIM5Q9P217 1185 aa18.01■□□□□ 0.47
SS18-215ENST00000580642 SERPINB13Q9UIV8 391 aa18.01■□□□□ 0.47
SS18-215ENST00000580642 NAV1Q8NEY1 1877 aa18.01■□□□□ 0.47
SS18-215ENST00000580642 NEDD4P46934 1319 aa18■□□□□ 0.47
SS18-215ENST00000580642 GLTPD2A6NH11 291 aa18■□□□□ 0.47
SS18-215ENST00000580642 B4E1Z4 1266 aa18■□□□□ 0.47
SS18-215ENST00000580642 PRC1O43663 620 aa18■□□□□ 0.47
SS18-215ENST00000580642 AK2P54819 239 aa18■□□□□ 0.47
SS18-215ENST00000580642 FGD1P98174 961 aa18■□□□□ 0.47
SS18-215ENST00000580642 ZNF444Q8N0Y2 327 aaPredicted RBP18■□□□□ 0.47
SS18-215ENST00000580642 MKNK2Q9HBH9 465 aa18■□□□□ 0.47
SS18-215ENST00000580642 SAP30BPQ9UHR5 308 aaKnown RBP18■□□□□ 0.47
SS18-215ENST00000580642 PCDHAC2Q9Y5I4 1007 aa18■□□□□ 0.47
SS18-215ENST00000580642 PITPNM2Q9BZ72 1349 aa17.99■□□□□ 0.47
SS18-215ENST00000580642 LAMB1P07942 1786 aa17.99■□□□□ 0.47
SS18-215ENST00000580642 CYP2D7A0A087X1C5 515 aa17.99■□□□□ 0.47
SS18-215ENST00000580642 ERICH2A1L162 156 aa17.99■□□□□ 0.47
SS18-215ENST00000580642 KDM4AO75164 1064 aa17.99■□□□□ 0.47
SS18-215ENST00000580642 CYP2D6P10635 497 aa17.99■□□□□ 0.47
SS18-215ENST00000580642 PPP4R3BQ5MIZ7 849 aa17.99■□□□□ 0.47
SS18-215ENST00000580642 APOBEC3FQ8IUX4 373 aaKnown RBP17.99■□□□□ 0.47
SS18-215ENST00000580642 HOOK2Q96ED9 719 aa17.99■□□□□ 0.47
SS18-215ENST00000580642 CCDC17Q96LX7 622 aa17.99■□□□□ 0.47
SS18-215ENST00000580642 TCP11L1Q9NUJ3 509 aa17.99■□□□□ 0.47
SS18-215ENST00000580642 HERC5Q9UII4 1024 aaKnown RBP17.99■□□□□ 0.47
SS18-215ENST00000580642 ANGEL1Q9UNK9 670 aaKnown RBP17.99■□□□□ 0.47
SS18-215ENST00000580642 PPP2R3BQ9Y5P8 575 aa17.99■□□□□ 0.47
SS18-215ENST00000580642 ECM29Q5VYK3 1845 aa17.98■□□□□ 0.47
SS18-215ENST00000580642 TBC1D12O60347 775 aa17.98■□□□□ 0.47
SS18-215ENST00000580642 DDNO94850 711 aaPredicted RBP17.98■□□□□ 0.47
SS18-215ENST00000580642 CD2BP2O95400 341 aaKnown RBP17.98■□□□□ 0.47
SS18-215ENST00000580642 CDK8P49336 464 aa17.98■□□□□ 0.47
SS18-215ENST00000580642 RCAN1P53805 252 aa17.98■□□□□ 0.47
SS18-215ENST00000580642 ANTXR2P58335 489 aa17.98■□□□□ 0.47
SS18-215ENST00000580642 TOB2Q14106 344 aaPredicted RBP17.98■□□□□ 0.47
SS18-215ENST00000580642 NBPF9Q3BBW0 867 aa17.98■□□□□ 0.47
SS18-215ENST00000580642 Q6ZUG5 572 aa17.98■□□□□ 0.47
SS18-215ENST00000580642 SGMS1Q86VZ5 419 aa17.98■□□□□ 0.47
SS18-215ENST00000580642 ZNF274Q96GC6 653 aaPredicted RBP17.98■□□□□ 0.47
SS18-215ENST00000580642 INTS4Q96HW7 963 aaKnown RBP17.98■□□□□ 0.47
SS18-215ENST00000580642 TMX3Q96JJ7 454 aa17.98■□□□□ 0.47
SS18-215ENST00000580642 UBAC1Q9BSL1 405 aa17.98■□□□□ 0.47
SS18-215ENST00000580642 TOMM22Q9NS69 142 aa17.98■□□□□ 0.47
SS18-215ENST00000580642 CDK5RAP2Q96SN8 1893 aa17.98■□□□□ 0.47
SS18-215ENST00000580642 ADAMTSL1Q8N6G6 1762 aa17.97■□□□□ 0.47
SS18-215ENST00000580642 IQCA1LA6NCM1 817 aa17.97■□□□□ 0.47
SS18-215ENST00000580642 CPA1P15085 419 aa17.97■□□□□ 0.47
SS18-215ENST00000580642 CUL4AQ13619 759 aa17.97■□□□□ 0.47
SS18-215ENST00000580642 RRP12Q5JTH9 1297 aaKnown RBP17.97■□□□□ 0.47
SS18-215ENST00000580642 USP50Q70EL3 339 aaPredicted RBP17.97■□□□□ 0.47
SS18-215ENST00000580642 ZSCAN29Q8IWY8 852 aaPredicted RBP17.97■□□□□ 0.47
SS18-215ENST00000580642 IGDCC4Q8TDY8 1250 aa17.97■□□□□ 0.47
SS18-215ENST00000580642 ZC3H15Q8WU90 426 aaKnown RBP17.97■□□□□ 0.47
SS18-215ENST00000580642 BAZ2AQ9UIF9 1905 aaKnown RBP17.96■□□□□ 0.47
SS18-215ENST00000580642 CNTNAP1P78357 1384 aa17.96■□□□□ 0.47
SS18-215ENST00000580642 PLIN4Q96Q06 1357 aa17.96■□□□□ 0.47
SS18-215ENST00000580642 CLRN2A0PK11 232 aa17.96■□□□□ 0.47
SS18-215ENST00000580642 SH2B2O14492 632 aaPredicted RBP17.96■□□□□ 0.47
SS18-215ENST00000580642 RANBP6O60518 1105 aaKnown RBP17.96■□□□□ 0.47
SS18-215ENST00000580642 MAP3K10Q02779 954 aa17.96■□□□□ 0.47
SS18-215ENST00000580642 TCP10Q12799 353 aa17.96■□□□□ 0.47
SS18-215ENST00000580642 TBC1D10BQ4KMP7 808 aaPredicted RBP17.96■□□□□ 0.47
SS18-215ENST00000580642 CYB5R4Q7L1T6 521 aa17.96■□□□□ 0.47
SS18-215ENST00000580642 SAMD7Q7Z3H4 446 aa17.96■□□□□ 0.47
SS18-215ENST00000580642 DGKHQ86XP1 1220 aa17.96■□□□□ 0.47
SS18-215ENST00000580642 ANKS1AQ92625 1134 aa17.96■□□□□ 0.47
SS18-215ENST00000580642 ZSCAN10Q96SZ4 725 aaPredicted RBP17.96■□□□□ 0.47
SS18-215ENST00000580642 VEZTQ9HBM0 779 aa17.96■□□□□ 0.47
SS18-215ENST00000580642 TACC3Q9Y6A5 838 aa17.96■□□□□ 0.47
SS18-215ENST00000580642 DDTLA6NHG4 134 aaPredicted RBP17.95■□□□□ 0.46
SS18-215ENST00000580642 TSPY2A6NKD2 308 aa17.95■□□□□ 0.46
SS18-215ENST00000580642 TCP10L2B9ZVM9 353 aa17.95■□□□□ 0.46
SS18-215ENST00000580642 IFIT3O14879 490 aaKnown RBP17.95■□□□□ 0.46
SS18-215ENST00000580642 RASA1P20936 1047 aa17.95■□□□□ 0.46
SS18-215ENST00000580642 CACNB3P54284 484 aa17.95■□□□□ 0.46
SS18-215ENST00000580642 PPP2R5BQ15173 497 aa17.95■□□□□ 0.46
SS18-215ENST00000580642 TMEM67Q5HYA8 995 aa17.95■□□□□ 0.46
SS18-215ENST00000580642 TATDN1Q6P1N9 297 aa17.95■□□□□ 0.46
SS18-215ENST00000580642 SH3BP5LQ7L8J4 393 aa17.95■□□□□ 0.46
SS18-215ENST00000580642 ZFPM1Q8IX07 1006 aa17.95■□□□□ 0.46
SS18-215ENST00000580642 CRACR2BQ8N4Y2 399 aaPredicted RBP17.95■□□□□ 0.46
SS18-215ENST00000580642 NEDD1Q8NHV4 660 aa17.95■□□□□ 0.46
SS18-215ENST00000580642 BRF1Q92994 677 aa17.95■□□□□ 0.46
SS18-215ENST00000580642 CSRNP1Q96S65 589 aa17.95■□□□□ 0.46
SS18-215ENST00000580642 TRIM34Q9BYJ4 488 aa17.95■□□□□ 0.46
SS18-215ENST00000580642 HACL1Q9UJ83 578 aa17.95■□□□□ 0.46
SS18-215ENST00000580642 MYH1P12882 1939 aa17.94■□□□□ 0.46
SS18-215ENST00000580642 SHTN1A0MZ66 631 aa17.94■□□□□ 0.46
SS18-215ENST00000580642 EPS15P42566 896 aa17.94■□□□□ 0.46
SS18-215ENST00000580642 NOVP48745 357 aa17.94■□□□□ 0.46
SS18-215ENST00000580642 TFAP4Q01664 338 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms