RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 DIXDC1Q155Q3 683 aa19.66■□□□□ 0.74
LDLR-206ENST00000557958 ATL3Q6DD88 541 aa19.66■□□□□ 0.74
LDLR-206ENST00000557958 SLF2Q8IX21 1173 aa19.66■□□□□ 0.74
LDLR-206ENST00000557958 LARGE2Q8N3Y3 721 aa19.66■□□□□ 0.74
LDLR-206ENST00000557958 FHDC1Q9C0D6 1143 aaPredicted RBP19.66■□□□□ 0.74
LDLR-206ENST00000557958 ORC3Q9UBD5 711 aaPredicted RBP19.66■□□□□ 0.74
LDLR-206ENST00000557958 CFAP45Q9UL16 551 aa19.66■□□□□ 0.74
LDLR-206ENST00000557958 GRPEL1Q9HAV7 217 aa19.65■□□□□ 0.74
LDLR-206ENST00000557958 DLEC1Q9Y238 1755 aa19.65■□□□□ 0.74
LDLR-206ENST00000557958 GOLGA8AA7E2F4 631 aa19.65■□□□□ 0.74
LDLR-206ENST00000557958 MICU3Q86XE3 530 aa19.65■□□□□ 0.74
LDLR-206ENST00000557958 AMOTL1Q8IY63 956 aa19.65■□□□□ 0.74
LDLR-206ENST00000557958 PSMD1Q99460 953 aa19.65■□□□□ 0.74
LDLR-206ENST00000557958 DCP1AQ9NPI6 582 aaPredicted RBP19.65■□□□□ 0.74
LDLR-206ENST00000557958 CCDC196A0A1B0GTZ2 297 aa19.64■□□□□ 0.73
LDLR-206ENST00000557958 GADD45BO75293 160 aaPredicted RBP19.64■□□□□ 0.73
LDLR-206ENST00000557958 SBK1Q52WX2 424 aa19.64■□□□□ 0.73
LDLR-206ENST00000557958 CTR9Q6PD62 1173 aa19.64■□□□□ 0.73
LDLR-206ENST00000557958 C8orf76Q96K31 380 aa19.64■□□□□ 0.73
LDLR-206ENST00000557958 RTN4Q9NQC3 1192 aaKnown RBP19.64■□□□□ 0.73
LDLR-206ENST00000557958 TMEM63CQ9P1W3 806 aa19.64■□□□□ 0.73
LDLR-206ENST00000557958 FAM205AQ6ZU69 1335 aa19.64■□□□□ 0.73
LDLR-206ENST00000557958 NID2Q14112 1375 aa19.64■□□□□ 0.73
LDLR-206ENST00000557958 LETM1O95202 739 aaPredicted RBP19.63■□□□□ 0.73
LDLR-206ENST00000557958 IQCA1Q86XH1 822 aa19.63■□□□□ 0.73
LDLR-206ENST00000557958 SPATA32Q96LK8 384 aa19.63■□□□□ 0.73
LDLR-206ENST00000557958 INCENPQ9NQS7 918 aa19.63■□□□□ 0.73
LDLR-206ENST00000557958 GOLGA6L4A6NEF3 574 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 USP17L12C9JPN9 530 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 USP17L21D6R901 530 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 PLCG2P16885 1265 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 PPP2R5BQ15173 497 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 ZNF396Q96N95 335 aaPredicted RBP19.62■□□□□ 0.73
LDLR-206ENST00000557958 TAOK3Q9H2K8 898 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 RBM27Q9P2N5 1060 aaKnown RBP19.62■□□□□ 0.73
LDLR-206ENST00000557958 USP17L3A6NCW0 530 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 USP17L4A6NCW7 530 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 FGRP09769 529 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 FDPSP14324 419 aaKnown RBP19.62■□□□□ 0.73
LDLR-206ENST00000557958 PPP4CP60510 307 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 PDE4BQ07343 736 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 USP17L1Q7RTZ2 530 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 CERS5Q8N5B7 392 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 TTF2Q9UNY4 1162 aaKnown RBP19.62■□□□□ 0.73
LDLR-206ENST00000557958 MROH7-TTC4A0A0A0MT08 1334 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 SNED1Q8TER0 1413 aa19.62■□□□□ 0.73
LDLR-206ENST00000557958 USP5P45974 858 aa19.61■□□□□ 0.73
LDLR-206ENST00000557958 SCNN1DP51172 638 aa19.61■□□□□ 0.73
LDLR-206ENST00000557958 CCDC183Q5T5S1 534 aa19.61■□□□□ 0.73
LDLR-206ENST00000557958 WASF1Q92558 559 aa19.61■□□□□ 0.73
LDLR-206ENST00000557958 TACC3Q9Y6A5 838 aa19.61■□□□□ 0.73
LDLR-206ENST00000557958 TCHHQ07283 1943 aa19.61■□□□□ 0.73
LDLR-206ENST00000557958 ORC4O43929 436 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 RAD17O75943 681 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 IARSP41252 1262 aaKnown RBP19.6■□□□□ 0.73
LDLR-206ENST00000557958 RAB11FIP4Q86YS3 637 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 FAM43AQ8N2R8 423 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 FBXO18Q8NFZ0 1043 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 SUGT1Q9Y2Z0 365 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 STK36Q9NRP7 1315 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 YDJCA8MPS7 323 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 RANBP6O60518 1105 aaKnown RBP19.6■□□□□ 0.73
LDLR-206ENST00000557958 XRCC6P12956 609 aaKnown RBP eCLIP19.6■□□□□ 0.73
LDLR-206ENST00000557958 STRIP1Q5VSL9 837 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 LRSAM1Q6UWE0 723 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 BRAPQ7Z569 592 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 TTC6Q86TZ1 520 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 KIAA0825Q8IV33 1275 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 NIM1KQ8IY84 436 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 STK11IPQ8N1F8 1099 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 ZSCAN10Q96SZ4 725 aaPredicted RBP19.6■□□□□ 0.73
LDLR-206ENST00000557958 TNKSO95271 1327 aa19.6■□□□□ 0.73
LDLR-206ENST00000557958 ADD1P35611 737 aaKnown RBP19.59■□□□□ 0.73
LDLR-206ENST00000557958 FOSBP53539 338 aa19.59■□□□□ 0.73
LDLR-206ENST00000557958 RASSF7Q02833 373 aa19.59■□□□□ 0.73
LDLR-206ENST00000557958 TRIM29Q14134 588 aa19.59■□□□□ 0.73
LDLR-206ENST00000557958 RTN1Q16799 776 aa19.59■□□□□ 0.73
LDLR-206ENST00000557958 FAM173BQ6P4H8 233 aa19.59■□□□□ 0.73
LDLR-206ENST00000557958 GAS2L3Q86XJ1 694 aa19.59■□□□□ 0.73
LDLR-206ENST00000557958 TRIM22Q8IYM9 498 aa19.59■□□□□ 0.73
LDLR-206ENST00000557958 NKX2-3Q8TAU0 364 aa19.59■□□□□ 0.73
LDLR-206ENST00000557958 LEO1Q8WVC0 666 aaPredicted RBP19.59■□□□□ 0.73
LDLR-206ENST00000557958 MCM9Q9NXL9 1143 aa19.59■□□□□ 0.73
LDLR-206ENST00000557958 LAMB1P07942 1786 aa19.59■□□□□ 0.73
LDLR-206ENST00000557958 SYCE3A1L190 88 aa19.58■□□□□ 0.73
LDLR-206ENST00000557958 BTDP43251 543 aa19.58■□□□□ 0.73
LDLR-206ENST00000557958 SSRP1Q08945 709 aaKnown RBP19.58■□□□□ 0.73
LDLR-206ENST00000557958 ZKSCAN3Q9BRR0 538 aa19.58■□□□□ 0.73
LDLR-206ENST00000557958 SENP2Q9HC62 589 aa19.58■□□□□ 0.73
LDLR-206ENST00000557958 CALM1P0DP23 149 aa19.58■□□□□ 0.72
LDLR-206ENST00000557958 CALM2P0DP24 149 aa19.58■□□□□ 0.72
LDLR-206ENST00000557958 CALM3P0DP25 149 aa19.58■□□□□ 0.72
LDLR-206ENST00000557958 DACT2Q5SW24 774 aa19.58■□□□□ 0.72
LDLR-206ENST00000557958 ZNF654Q8IZM8 581 aa19.58■□□□□ 0.72
LDLR-206ENST00000557958 JDP2Q8WYK2 163 aa19.58■□□□□ 0.72
LDLR-206ENST00000557958 ANP32BQ92688 251 aaKnown RBP19.58■□□□□ 0.72
LDLR-206ENST00000557958 SYT17Q9BSW7 474 aa19.58■□□□□ 0.72
LDLR-206ENST00000557958 ALG1Q9BT22 464 aa19.58■□□□□ 0.72
LDLR-206ENST00000557958 TFIP11Q9UBB9 837 aaKnown RBP19.58■□□□□ 0.72
LDLR-206ENST00000557958 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms