RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 SBK1Q52WX2 424 aa16.34■□□□□ 0.21
CD44-224ENST00000526669 C12orf60Q5U649 245 aa16.34■□□□□ 0.21
CD44-224ENST00000526669 CRACR2BQ8N4Y2 399 aaPredicted RBP16.34■□□□□ 0.21
CD44-224ENST00000526669 SLC44A5Q8NCS7 719 aa16.34■□□□□ 0.21
CD44-224ENST00000526669 U3KPZ7 1027 aaPredicted RBP16.34■□□□□ 0.21
CD44-224ENST00000526669 GREB1LQ9C091 1923 aaPredicted RBP16.34■□□□□ 0.21
CD44-224ENST00000526669 ZMYM6O95789 1325 aa16.34■□□□□ 0.21
CD44-224ENST00000526669 TOMM70O94826 608 aa16.33■□□□□ 0.2
CD44-224ENST00000526669 TTC6Q86TZ1 520 aa16.33■□□□□ 0.2
CD44-224ENST00000526669 SMC1BQ8NDV3 1235 aa16.33■□□□□ 0.2
CD44-224ENST00000526669 RBM46Q8TBY0 533 aaKnown RBP16.33■□□□□ 0.2
CD44-224ENST00000526669 TRIM34Q9BYJ4 488 aa16.33■□□□□ 0.2
CD44-224ENST00000526669 DHX36Q9H2U1 1008 aaKnown RBP16.33■□□□□ 0.2
CD44-224ENST00000526669 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.33■□□□□ 0.2
CD44-224ENST00000526669 TACC3Q9Y6A5 838 aa16.33■□□□□ 0.2
CD44-224ENST00000526669 PTPRFP10586 1907 aa16.33■□□□□ 0.2
CD44-224ENST00000526669 ITGBL1O95965 494 aaPredicted RBP16.32■□□□□ 0.2
CD44-224ENST00000526669 NBPF3Q9H094 633 aa16.32■□□□□ 0.2
CD44-224ENST00000526669 DNAJC18Q9H819 358 aa16.32■□□□□ 0.2
CD44-224ENST00000526669 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.32■□□□□ 0.2
CD44-224ENST00000526669 INCENPQ9NQS7 918 aa16.32■□□□□ 0.2
CD44-224ENST00000526669 PI4KBQ9UBF8 816 aa16.32■□□□□ 0.2
CD44-224ENST00000526669 CTNNA3Q9UI47 895 aa16.32■□□□□ 0.2
CD44-224ENST00000526669 TAF6LQ9Y6J9 622 aa16.32■□□□□ 0.2
CD44-224ENST00000526669 ROBO3Q96MS0 1386 aa16.31■□□□□ 0.2
CD44-224ENST00000526669 ZNF213O14771 459 aa16.31■□□□□ 0.2
CD44-224ENST00000526669 SLC27A2O14975 620 aa16.31■□□□□ 0.2
CD44-224ENST00000526669 CYP21A2P08686 494 aa16.31■□□□□ 0.2
CD44-224ENST00000526669 TTLL12Q14166 644 aaPredicted RBP16.31■□□□□ 0.2
CD44-224ENST00000526669 IMMTQ16891 758 aaKnown RBP16.31■□□□□ 0.2
CD44-224ENST00000526669 SUPT20HL1Q3ZLR7 823 aa16.31■□□□□ 0.2
CD44-224ENST00000526669 CREB3L3Q68CJ9 461 aa16.31■□□□□ 0.2
CD44-224ENST00000526669 MOB2Q70IA6 237 aa16.31■□□□□ 0.2
CD44-224ENST00000526669 TBC1D10CQ8IV04 446 aa16.31■□□□□ 0.2
CD44-224ENST00000526669 USP26Q9BXU7 913 aa16.31■□□□□ 0.2
CD44-224ENST00000526669 SERPINB13Q9UIV8 391 aa16.31■□□□□ 0.2
CD44-224ENST00000526669 PRDM1O75626 825 aa16.3■□□□□ 0.2
CD44-224ENST00000526669 CELF2O95319 508 aaKnown RBP16.3■□□□□ 0.2
CD44-224ENST00000526669 NF2P35240 595 aa16.3■□□□□ 0.2
CD44-224ENST00000526669 CDK8P49336 464 aa16.3■□□□□ 0.2
CD44-224ENST00000526669 C16orf86Q6ZW13 317 aa16.3■□□□□ 0.2
CD44-224ENST00000526669 BACH2Q9BYV9 841 aa16.3■□□□□ 0.2
CD44-224ENST00000526669 TOMM22Q9NS69 142 aa16.3■□□□□ 0.2
CD44-224ENST00000526669 NEDD4P46934 1319 aa16.29■□□□□ 0.2
CD44-224ENST00000526669 GDF11O95390 407 aa16.29■□□□□ 0.2
CD44-224ENST00000526669 SHMT1P34896 483 aa16.29■□□□□ 0.2
CD44-224ENST00000526669 GABPAQ06546 454 aa16.29■□□□□ 0.2
CD44-224ENST00000526669 NECTIN1Q15223 517 aa16.29■□□□□ 0.2
CD44-224ENST00000526669 RRP12Q5JTH9 1297 aaKnown RBP16.29■□□□□ 0.2
CD44-224ENST00000526669 DCAF15Q66K64 600 aa16.29■□□□□ 0.2
CD44-224ENST00000526669 ZNF341Q9BYN7 854 aa16.29■□□□□ 0.2
CD44-224ENST00000526669 EHD4Q9H223 541 aa16.29■□□□□ 0.2
CD44-224ENST00000526669 ANAPC4Q9UJX5 808 aa16.29■□□□□ 0.2
CD44-224ENST00000526669 ANGEL1Q9UNK9 670 aaKnown RBP16.29■□□□□ 0.2
CD44-224ENST00000526669 PASKQ96RG2 1323 aa16.28■□□□□ 0.2
CD44-224ENST00000526669 USP2O75604 605 aaPredicted RBP16.28■□□□□ 0.2
CD44-224ENST00000526669 SLC3A2P08195 630 aaKnown RBP16.28■□□□□ 0.2
CD44-224ENST00000526669 RRP1BQ14684 758 aaKnown RBP16.28■□□□□ 0.2
CD44-224ENST00000526669 SHROOM1Q2M3G4 852 aaPredicted RBP16.28■□□□□ 0.2
CD44-224ENST00000526669 STOX1Q6ZVD7 989 aa16.28■□□□□ 0.2
CD44-224ENST00000526669 FOXP4Q8IVH2 680 aaPredicted RBP16.28■□□□□ 0.2
CD44-224ENST00000526669 RASEFQ8IZ41 740 aa16.28■□□□□ 0.2
CD44-224ENST00000526669 HOOK2Q96ED9 719 aa16.28■□□□□ 0.2
CD44-224ENST00000526669 MKNK2Q9HBH9 465 aa16.28■□□□□ 0.2
CD44-224ENST00000526669 HERC5Q9UII4 1024 aaKnown RBP16.28■□□□□ 0.2
CD44-224ENST00000526669 INPP5BP32019 993 aa16.27■□□□□ 0.2
CD44-224ENST00000526669 HSPA4P34932 840 aa16.27■□□□□ 0.2
CD44-224ENST00000526669 AKNAD1Q5T1N1 836 aa16.27■□□□□ 0.2
CD44-224ENST00000526669 METTL16Q86W50 562 aaKnown RBP16.27■□□□□ 0.2
CD44-224ENST00000526669 NKX2-3Q8TAU0 364 aa16.27■□□□□ 0.2
CD44-224ENST00000526669 STAG1Q8WVM7 1258 aa16.27■□□□□ 0.2
CD44-224ENST00000526669 WRNIP1Q96S55 665 aa16.27■□□□□ 0.2
CD44-224ENST00000526669 GBA2Q9HCG7 927 aaPredicted RBP16.27■□□□□ 0.2
CD44-224ENST00000526669 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.27■□□□□ 0.2
CD44-224ENST00000526669 SWAP70Q9UH65 585 aa16.27■□□□□ 0.2
CD44-224ENST00000526669 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.27■□□□□ 0.2
CD44-224ENST00000526669 E7EWF7 191 aa16.26■□□□□ 0.19
CD44-224ENST00000526669 UBE2Q2LH0YL09 131 aa16.26■□□□□ 0.19
CD44-224ENST00000526669 PPP1R12BO60237 982 aaPredicted RBP16.26■□□□□ 0.19
CD44-224ENST00000526669 TBC1D12O60347 775 aa16.26■□□□□ 0.19
CD44-224ENST00000526669 AKR1B1P15121 316 aa16.26■□□□□ 0.19
CD44-224ENST00000526669 RASA1P20936 1047 aa16.26■□□□□ 0.19
CD44-224ENST00000526669 MCCP23508 829 aa16.26■□□□□ 0.19
CD44-224ENST00000526669 PDE4BQ07343 736 aa16.26■□□□□ 0.19
CD44-224ENST00000526669 FSTL1Q12841 308 aa16.26■□□□□ 0.19
CD44-224ENST00000526669 FAM47AQ5JRC9 791 aa16.26■□□□□ 0.19
CD44-224ENST00000526669 RNF20Q5VTR2 975 aa16.26■□□□□ 0.19
CD44-224ENST00000526669 CST9Q5W186 159 aa16.26■□□□□ 0.19
CD44-224ENST00000526669 MFSD6Q6ZSS7 791 aa16.26■□□□□ 0.19
CD44-224ENST00000526669 SNX14Q9Y5W7 946 aa16.26■□□□□ 0.19
CD44-224ENST00000526669 PHF20L1A8MW92 1017 aa16.25■□□□□ 0.19
CD44-224ENST00000526669 B4E1Z4 1266 aa16.25■□□□□ 0.19
CD44-224ENST00000526669 MPHOSPH10O00566 681 aaKnown RBP16.25■□□□□ 0.19
CD44-224ENST00000526669 RANBP6O60518 1105 aaKnown RBP16.25■□□□□ 0.19
CD44-224ENST00000526669 EIF5BO60841 1220 aaKnown RBP16.25■□□□□ 0.19
CD44-224ENST00000526669 IREB2P48200 963 aaKnown RBP16.25■□□□□ 0.19
CD44-224ENST00000526669 JAG1P78504 1218 aa16.25■□□□□ 0.19
CD44-224ENST00000526669 MAP3K10Q02779 954 aa16.25■□□□□ 0.19
CD44-224ENST00000526669 CERKLQ49MI3 558 aaPredicted RBP16.25■□□□□ 0.19
CD44-224ENST00000526669 ARMC9Q7Z3E5 817 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms