RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 FGAP02671 866 aa17.83■□□□□ 0.44
NUP54-213ENST00000513352 SLURP2P0DP57 97 aa17.83■□□□□ 0.44
NUP54-213ENST00000513352 EVX2Q03828 476 aa17.83■□□□□ 0.44
NUP54-213ENST00000513352 ALX1Q15699 326 aa17.83■□□□□ 0.44
NUP54-213ENST00000513352 ARMC9Q7Z3E5 817 aa17.83■□□□□ 0.44
NUP54-213ENST00000513352 C2orf69Q8N8R5 385 aa17.83■□□□□ 0.44
NUP54-213ENST00000513352 ZNF341Q9BYN7 854 aa17.83■□□□□ 0.44
NUP54-213ENST00000513352 GBA2Q9HCG7 927 aaPredicted RBP17.83■□□□□ 0.44
NUP54-213ENST00000513352 SERPINB13Q9UIV8 391 aa17.83■□□□□ 0.44
NUP54-213ENST00000513352 ANGEL1Q9UNK9 670 aaKnown RBP17.83■□□□□ 0.44
NUP54-213ENST00000513352 PAPPA2Q9BXP8 1791 aa17.82■□□□□ 0.44
NUP54-213ENST00000513352 IREB2P48200 963 aaKnown RBP17.82■□□□□ 0.44
NUP54-213ENST00000513352 HAND2P61296 217 aa17.82■□□□□ 0.44
NUP54-213ENST00000513352 SBK1Q52WX2 424 aa17.82■□□□□ 0.44
NUP54-213ENST00000513352 C12orf60Q5U649 245 aa17.82■□□□□ 0.44
NUP54-213ENST00000513352 MOB2Q70IA6 237 aa17.82■□□□□ 0.44
NUP54-213ENST00000513352 DYNLL2Q96FJ2 89 aa17.82■□□□□ 0.44
NUP54-213ENST00000513352 CTNNA3Q9UI47 895 aa17.82■□□□□ 0.44
NUP54-213ENST00000513352 U3KPZ7 1027 aaPredicted RBP17.82■□□□□ 0.44
NUP54-213ENST00000513352 REC8O95072 547 aa17.81■□□□□ 0.44
NUP54-213ENST00000513352 SLC3A2P08195 630 aaKnown RBP17.81■□□□□ 0.44
NUP54-213ENST00000513352 CTDSPL2Q05D32 466 aa17.81■□□□□ 0.44
NUP54-213ENST00000513352 PPARAQ07869 468 aa17.81■□□□□ 0.44
NUP54-213ENST00000513352 FOXP4Q8IVH2 680 aaPredicted RBP17.81■□□□□ 0.44
NUP54-213ENST00000513352 WRNIP1Q96S55 665 aa17.81■□□□□ 0.44
NUP54-213ENST00000513352 LSG1Q9H089 658 aaKnown RBP17.81■□□□□ 0.44
NUP54-213ENST00000513352 HERC5Q9UII4 1024 aaKnown RBP17.81■□□□□ 0.44
NUP54-213ENST00000513352 RBM8AQ9Y5S9 174 aaKnown RBP17.81■□□□□ 0.44
NUP54-213ENST00000513352 LAMA4Q16363 1823 aa17.81■□□□□ 0.44
NUP54-213ENST00000513352 ZMYM6O95789 1325 aa17.8■□□□□ 0.44
NUP54-213ENST00000513352 SMIM22K7EJ46 135 aa17.8■□□□□ 0.44
NUP54-213ENST00000513352 IMMTQ16891 758 aaKnown RBP17.8■□□□□ 0.44
NUP54-213ENST00000513352 CST9Q5W186 159 aa17.8■□□□□ 0.44
NUP54-213ENST00000513352 EHD4Q9H223 541 aa17.8■□□□□ 0.44
NUP54-213ENST00000513352 ABT1Q9ULW3 272 aaKnown RBP17.8■□□□□ 0.44
NUP54-213ENST00000513352 OTOFQ9HC10 1997 aa17.79■□□□□ 0.44
NUP54-213ENST00000513352 TMEM88BA6NKF7 163 aa17.79■□□□□ 0.44
NUP54-213ENST00000513352 UBE2Q2LH0YL09 131 aa17.79■□□□□ 0.44
NUP54-213ENST00000513352 ZNF213O14771 459 aa17.79■□□□□ 0.44
NUP54-213ENST00000513352 USP2O75604 605 aaPredicted RBP17.79■□□□□ 0.44
NUP54-213ENST00000513352 SLC44A5Q8NCS7 719 aa17.79■□□□□ 0.44
NUP54-213ENST00000513352 TOMM22Q9NS69 142 aa17.79■□□□□ 0.44
NUP54-213ENST00000513352 TBC1D12O60347 775 aa17.78■□□□□ 0.44
NUP54-213ENST00000513352 APLP1P51693 650 aa17.78■□□□□ 0.44
NUP54-213ENST00000513352 FKBP1BP68106 108 aa17.78■□□□□ 0.44
NUP54-213ENST00000513352 C16orf86Q6ZW13 317 aa17.78■□□□□ 0.44
NUP54-213ENST00000513352 MAP4K1Q92918 833 aa17.78■□□□□ 0.44
NUP54-213ENST00000513352 DNAJC18Q9H819 358 aa17.78■□□□□ 0.44
NUP54-213ENST00000513352 MKNK2Q9HBH9 465 aa17.78■□□□□ 0.44
NUP54-213ENST00000513352 SWAP70Q9UH65 585 aa17.78■□□□□ 0.44
NUP54-213ENST00000513352 CSADQ9Y600 493 aa17.78■□□□□ 0.44
NUP54-213ENST00000513352 ROBO3Q96MS0 1386 aa17.78■□□□□ 0.44
NUP54-213ENST00000513352 ATAD5Q96QE3 1844 aa17.77■□□□□ 0.44
NUP54-213ENST00000513352 INPP5BP32019 993 aa17.77■□□□□ 0.44
NUP54-213ENST00000513352 CDK8P49336 464 aa17.77■□□□□ 0.44
NUP54-213ENST00000513352 HUNKP57058 714 aa17.77■□□□□ 0.44
NUP54-213ENST00000513352 PDE4BQ07343 736 aa17.77■□□□□ 0.44
NUP54-213ENST00000513352 C8orf34Q49A92 452 aa17.77■□□□□ 0.44
NUP54-213ENST00000513352 KLRG1Q96E93 195 aa17.77■□□□□ 0.44
NUP54-213ENST00000513352 ZNF287Q9HBT7 754 aa17.77■□□□□ 0.44
NUP54-213ENST00000513352 MPHOSPH10O00566 681 aaKnown RBP17.76■□□□□ 0.43
NUP54-213ENST00000513352 EIF5BO60841 1220 aaKnown RBP17.76■□□□□ 0.43
NUP54-213ENST00000513352 PRDM1O75626 825 aa17.76■□□□□ 0.43
NUP54-213ENST00000513352 GDF11O95390 407 aa17.76■□□□□ 0.43
NUP54-213ENST00000513352 C1QTNF8P60827 252 aa17.76■□□□□ 0.43
NUP54-213ENST00000513352 MAP3K9P80192 1104 aa17.76■□□□□ 0.43
NUP54-213ENST00000513352 GABPAQ06546 454 aa17.76■□□□□ 0.43
NUP54-213ENST00000513352 CERKLQ49MI3 558 aaPredicted RBP17.76■□□□□ 0.43
NUP54-213ENST00000513352 RRP12Q5JTH9 1297 aaKnown RBP17.76■□□□□ 0.43
NUP54-213ENST00000513352 PAXIP1Q6ZW49 1069 aaPredicted RBP17.76■□□□□ 0.43
NUP54-213ENST00000513352 METTL16Q86W50 562 aaKnown RBP17.76■□□□□ 0.43
NUP54-213ENST00000513352 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.76■□□□□ 0.43
NUP54-213ENST00000513352 ZKSCAN4Q969J2 545 aaPredicted RBP17.76■□□□□ 0.43
NUP54-213ENST00000513352 ANAPC4Q9UJX5 808 aa17.76■□□□□ 0.43
NUP54-213ENST00000513352 DOCK1Q14185 1865 aa17.75■□□□□ 0.43
NUP54-213ENST00000513352 PHF20L1A8MW92 1017 aa17.75■□□□□ 0.43
NUP54-213ENST00000513352 SHMT1P34896 483 aa17.75■□□□□ 0.43
NUP54-213ENST00000513352 MAP3K10Q02779 954 aa17.75■□□□□ 0.43
NUP54-213ENST00000513352 TBC1D10CQ8IV04 446 aa17.75■□□□□ 0.43
NUP54-213ENST00000513352 ANKRD13AQ8IZ07 590 aa17.75■□□□□ 0.43
NUP54-213ENST00000513352 CLMNQ96JQ2 1002 aa17.75■□□□□ 0.43
NUP54-213ENST00000513352 RNF41Q9H4P4 317 aaPredicted RBP17.75■□□□□ 0.43
NUP54-213ENST00000513352 CYP21A2P08686 494 aa17.74■□□□□ 0.43
NUP54-213ENST00000513352 VGLL4Q14135 290 aa17.74■□□□□ 0.43
NUP54-213ENST00000513352 MAP3K11Q16584 847 aa17.74■□□□□ 0.43
NUP54-213ENST00000513352 AKNAD1Q5T1N1 836 aa17.74■□□□□ 0.43
NUP54-213ENST00000513352 RNF20Q5VTR2 975 aa17.74■□□□□ 0.43
NUP54-213ENST00000513352 CREB3L3Q68CJ9 461 aa17.74■□□□□ 0.43
NUP54-213ENST00000513352 MFSD6Q6ZSS7 791 aa17.74■□□□□ 0.43
NUP54-213ENST00000513352 ZNF444Q8N0Y2 327 aaPredicted RBP17.74■□□□□ 0.43
NUP54-213ENST00000513352 ELP3Q9H9T3 547 aa17.74■□□□□ 0.43
NUP54-213ENST00000513352 CABP5Q9NP86 173 aa17.74■□□□□ 0.43
NUP54-213ENST00000513352 INCENPQ9NQS7 918 aa17.74■□□□□ 0.43
NUP54-213ENST00000513352 PICK1Q9NRD5 415 aa17.74■□□□□ 0.43
NUP54-213ENST00000513352 CREBZFQ9NS37 354 aa17.74■□□□□ 0.43
NUP54-213ENST00000513352 ZNF112Q9UJU3 913 aa17.74■□□□□ 0.43
NUP54-213ENST00000513352 TLL2Q9Y6L7 1015 aa17.74■□□□□ 0.43
NUP54-213ENST00000513352 SLC27A2O14975 620 aa17.73■□□□□ 0.43
NUP54-213ENST00000513352 RANBP6O60518 1105 aaKnown RBP17.73■□□□□ 0.43
NUP54-213ENST00000513352 CTNND1O60716 968 aaKnown RBP17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms