RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 DEFB129Q9H1M3 183 aa22.98■■□□□ 1.27
USP39-218ENST00000493829 ANAPC4Q9UJX5 808 aa22.98■■□□□ 1.27
USP39-218ENST00000493829 COL2A1P02458 1487 aaPredicted RBP22.98■■□□□ 1.27
USP39-218ENST00000493829 ATRNL1Q5VV63 1379 aa22.97■■□□□ 1.27
USP39-218ENST00000493829 ROBO3Q96MS0 1386 aa22.97■■□□□ 1.27
USP39-218ENST00000493829 ANAPC15P60006 121 aa22.97■■□□□ 1.27
USP39-218ENST00000493829 AKNAD1Q5T1N1 836 aa22.97■■□□□ 1.27
USP39-218ENST00000493829 PRAMEF18Q5VWM3 479 aa22.97■■□□□ 1.27
USP39-218ENST00000493829 DCPSQ96C86 337 aaKnown RBP22.97■■□□□ 1.27
USP39-218ENST00000493829 UPF3BQ9BZI7 483 aaKnown RBP22.97■■□□□ 1.27
USP39-218ENST00000493829 DHX36Q9H2U1 1008 aaKnown RBP22.97■■□□□ 1.27
USP39-218ENST00000493829 CLEC11AQ9Y240 323 aa22.97■■□□□ 1.27
USP39-218ENST00000493829 ADM5C9JUS6 153 aa22.97■■□□□ 1.27
USP39-218ENST00000493829 SLC3A2P08195 630 aaKnown RBP22.97■■□□□ 1.27
USP39-218ENST00000493829 VEGFAP15692 232 aaPredicted RBP22.97■■□□□ 1.27
USP39-218ENST00000493829 CASTP20810 708 aaKnown RBP22.97■■□□□ 1.27
USP39-218ENST00000493829 MFSD6Q6ZSS7 791 aa22.97■■□□□ 1.27
USP39-218ENST00000493829 CRACR2BQ8N4Y2 399 aaPredicted RBP22.97■■□□□ 1.27
USP39-218ENST00000493829 KRT32Q14532 448 aa22.96■■□□□ 1.27
USP39-218ENST00000493829 DLK2Q6UY11 383 aa22.96■■□□□ 1.27
USP39-218ENST00000493829 PNMA8AQ86V59 439 aaPredicted RBP22.96■■□□□ 1.27
USP39-218ENST00000493829 NKX2-3Q8TAU0 364 aa22.96■■□□□ 1.27
USP39-218ENST00000493829 STAG1Q8WVM7 1258 aa22.96■■□□□ 1.27
USP39-218ENST00000493829 B4E1Z4 1266 aa22.95■■□□□ 1.26
USP39-218ENST00000493829 RALYLQ86SE5 291 aaKnown RBP22.95■■□□□ 1.26
USP39-218ENST00000493829 TRIM34Q9BYJ4 488 aa22.95■■□□□ 1.26
USP39-218ENST00000493829 SERPINB13Q9UIV8 391 aa22.95■■□□□ 1.26
USP39-218ENST00000493829 PITPNM2Q9BZ72 1349 aa22.95■■□□□ 1.26
USP39-218ENST00000493829 MYH8P13535 1937 aa22.94■■□□□ 1.26
USP39-218ENST00000493829 POLR2AP24928 1970 aaKnown RBP22.94■■□□□ 1.26
USP39-218ENST00000493829 TSGA10IPQ3SY00 556 aa22.94■■□□□ 1.26
USP39-218ENST00000493829 SULF1Q8IWU6 871 aa22.94■■□□□ 1.26
USP39-218ENST00000493829 TCEANC2Q96MN5 208 aa22.94■■□□□ 1.26
USP39-218ENST00000493829 NEK1Q96PY6 1258 aa22.94■■□□□ 1.26
USP39-218ENST00000493829 RNF41Q9H4P4 317 aaPredicted RBP22.94■■□□□ 1.26
USP39-218ENST00000493829 PI4KBQ9UBF8 816 aa22.94■■□□□ 1.26
USP39-218ENST00000493829 PDE4BQ07343 736 aa22.93■■□□□ 1.26
USP39-218ENST00000493829 TRDNQ13061 729 aa22.93■■□□□ 1.26
USP39-218ENST00000493829 C16orf86Q6ZW13 317 aa22.93■■□□□ 1.26
USP39-218ENST00000493829 CHST3Q7LGC8 479 aa22.93■■□□□ 1.26
USP39-218ENST00000493829 KRT26Q7Z3Y9 468 aa22.93■■□□□ 1.26
USP39-218ENST00000493829 TEPSINQ96N21 525 aa22.93■■□□□ 1.26
USP39-218ENST00000493829 CDK8P49336 464 aa22.93■■□□□ 1.26
USP39-218ENST00000493829 MIGA2Q7L4E1 593 aa22.93■■□□□ 1.26
USP39-218ENST00000493829 NCOA7Q8NI08 942 aa22.93■■□□□ 1.26
USP39-218ENST00000493829 DNAJC18Q9H819 358 aa22.93■■□□□ 1.26
USP39-218ENST00000493829 MKNK2Q9HBH9 465 aa22.93■■□□□ 1.26
USP39-218ENST00000493829 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.93■■□□□ 1.26
USP39-218ENST00000493829 RANBP6O60518 1105 aaKnown RBP22.92■■□□□ 1.26
USP39-218ENST00000493829 KDM4AO75164 1064 aa22.92■■□□□ 1.26
USP39-218ENST00000493829 NBPF12Q5TAG4 269 aaPredicted RBP22.92■■□□□ 1.26
USP39-218ENST00000493829 BLOC1S2Q6QNY1 142 aa22.92■■□□□ 1.26
USP39-218ENST00000493829 EHD4Q9H223 541 aa22.92■■□□□ 1.26
USP39-218ENST00000493829 PGAP2Q9UHJ9 254 aa22.92■■□□□ 1.26
USP39-218ENST00000493829 PSMA5P28066 241 aa22.91■■□□□ 1.26
USP39-218ENST00000493829 GABPAQ06546 454 aa22.91■■□□□ 1.26
USP39-218ENST00000493829 FAM47AQ5JRC9 791 aa22.91■■□□□ 1.26
USP39-218ENST00000493829 MAP1SQ66K74 1059 aaPredicted RBP22.91■■□□□ 1.26
USP39-218ENST00000493829 USP48Q86UV5 1035 aa22.91■■□□□ 1.26
USP39-218ENST00000493829 ZC3H15Q8WU90 426 aaKnown RBP22.91■■□□□ 1.26
USP39-218ENST00000493829 GLIS2Q9BZE0 524 aaPredicted RBP22.91■■□□□ 1.26
USP39-218ENST00000493829 CNNM2Q9H8M5 875 aa22.91■■□□□ 1.26
USP39-218ENST00000493829 CYB5R4Q7L1T6 521 aa22.9■■□□□ 1.26
USP39-218ENST00000493829 MB21D2Q8IYB1 491 aaPredicted RBP22.9■■□□□ 1.26
USP39-218ENST00000493829 LRRC2Q9BYS8 371 aa22.9■■□□□ 1.26
USP39-218ENST00000493829 KRT23Q9C075 422 aa22.9■■□□□ 1.26
USP39-218ENST00000493829 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.9■■□□□ 1.26
USP39-218ENST00000493829 CYP46A1Q9Y6A2 500 aa22.9■■□□□ 1.26
USP39-218ENST00000493829 SSC5DA1L4H1 1573 aa22.9■■□□□ 1.26
USP39-218ENST00000493829 SHMT1P34896 483 aa22.9■■□□□ 1.26
USP39-218ENST00000493829 NEK4P51957 841 aa22.9■■□□□ 1.26
USP39-218ENST00000493829 RABEP1Q15276 862 aa22.9■■□□□ 1.26
USP39-218ENST00000493829 IL17RAQ96F46 866 aa22.9■■□□□ 1.26
USP39-218ENST00000493829 GPBP1L1Q9HC44 474 aaPredicted RBP22.9■■□□□ 1.26
USP39-218ENST00000493829 ZSWIM6Q9HCJ5 1215 aa22.9■■□□□ 1.26
USP39-218ENST00000493829 ORC4O43929 436 aa22.89■■□□□ 1.25
USP39-218ENST00000493829 RASA1P20936 1047 aa22.89■■□□□ 1.25
USP39-218ENST00000493829 RPS6KB1P23443 525 aa22.89■■□□□ 1.25
USP39-218ENST00000493829 RUFY3Q7L099 469 aa22.89■■□□□ 1.25
USP39-218ENST00000493829 ESR2Q92731 530 aa22.89■■□□□ 1.25
USP39-218ENST00000493829 ZKSCAN3Q9BRR0 538 aa22.89■■□□□ 1.25
USP39-218ENST00000493829 SWAP70Q9UH65 585 aa22.89■■□□□ 1.25
USP39-218ENST00000493829 FZD1Q9UP38 647 aa22.89■■□□□ 1.25
USP39-218ENST00000493829 PPP2R3BQ9Y5P8 575 aa22.89■■□□□ 1.25
USP39-218ENST00000493829 TSPY2A6NKD2 308 aa22.88■■□□□ 1.25
USP39-218ENST00000493829 NOL8Q76FK4 1167 aaKnown RBP22.88■■□□□ 1.25
USP39-218ENST00000493829 FOXP4Q8IVH2 680 aaPredicted RBP22.88■■□□□ 1.25
USP39-218ENST00000493829 TM6SF1Q9BZW5 370 aa22.88■■□□□ 1.25
USP39-218ENST00000493829 ZNF287Q9HBT7 754 aa22.88■■□□□ 1.25
USP39-218ENST00000493829 PRC1O43663 620 aa22.87■■□□□ 1.25
USP39-218ENST00000493829 FGRP09769 529 aa22.87■■□□□ 1.25
USP39-218ENST00000493829 PCP11498 1178 aaKnown RBP22.87■■□□□ 1.25
USP39-218ENST00000493829 ANTXR2P58335 489 aa22.87■■□□□ 1.25
USP39-218ENST00000493829 PRKG1Q13976 671 aa22.87■■□□□ 1.25
USP39-218ENST00000493829 SHROOM1Q2M3G4 852 aaPredicted RBP22.87■■□□□ 1.25
USP39-218ENST00000493829 LDHDQ86WU2 507 aa22.87■■□□□ 1.25
USP39-218ENST00000493829 ZNF444Q8N0Y2 327 aaPredicted RBP22.87■■□□□ 1.25
USP39-218ENST00000493829 HERC5Q9UII4 1024 aaKnown RBP22.87■■□□□ 1.25
USP39-218ENST00000493829 RBM19Q9Y4C8 960 aaKnown RBP22.87■■□□□ 1.25
USP39-218ENST00000493829 MPHOSPH10O00566 681 aaKnown RBP22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms