RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PRKAG2Q9UGJ0 569 aa3.66□□□□□ -1.82
HMGB1-208ENST00000490788 FANCGO15287 622 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 CYP26A1O43174 497 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 TGFB1P01137 390 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 CTSHP09668 335 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 ZNF16P17020 682 aaPredicted RBP3.65□□□□□ -1.83
HMGB1-208ENST00000490788 GP2P55259 537 aaKnown RBP3.65□□□□□ -1.83
HMGB1-208ENST00000490788 SEPT6Q14141 434 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 TSNAXIP1Q2TAA8 658 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 PPM1JQ5JR12 505 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 WIPI1Q5MNZ9 446 aaPredicted RBP3.65□□□□□ -1.83
HMGB1-208ENST00000490788 MPRIPQ6WCQ1 1025 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 AGMOQ6ZNB7 445 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 HS2ST1Q7LGA3 356 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 ZAR1Q86SH2 424 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 TMEM87AQ8NBN3 555 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 ZNF507Q8TCN5 953 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 GSX1Q9H4S2 264 aaPredicted RBP3.65□□□□□ -1.83
HMGB1-208ENST00000490788 LRRC4CQ9HCJ2 640 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 PIM2Q9P1W9 311 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 SNCAIPQ9Y6H5 919 aa3.65□□□□□ -1.83
HMGB1-208ENST00000490788 MINDY4BA8MYZ0 360 aa3.64□□□□□ -1.83
HMGB1-208ENST00000490788 F13BP05160 661 aa3.64□□□□□ -1.83
HMGB1-208ENST00000490788 PDE4BQ07343 736 aa3.64□□□□□ -1.83
HMGB1-208ENST00000490788 KRTAP1-1Q07627 177 aa3.64□□□□□ -1.83
HMGB1-208ENST00000490788 CDK5R2Q13319 367 aa3.64□□□□□ -1.83
HMGB1-208ENST00000490788 SNAP47Q5SQN1 464 aa3.64□□□□□ -1.83
HMGB1-208ENST00000490788 ZDHHC13Q8IUH4 622 aa3.64□□□□□ -1.83
HMGB1-208ENST00000490788 ISL2Q96A47 359 aa3.64□□□□□ -1.83
HMGB1-208ENST00000490788 PLPPR2Q96GM1 343 aa3.64□□□□□ -1.83
HMGB1-208ENST00000490788 GGT7Q9UJ14 662 aa3.64□□□□□ -1.83
HMGB1-208ENST00000490788 ANGEL1Q9UNK9 670 aaKnown RBP3.64□□□□□ -1.83
HMGB1-208ENST00000490788 TLR6Q9Y2C9 796 aa3.64□□□□□ -1.83
HMGB1-208ENST00000490788 PCDHB5Q9Y5E4 795 aa3.64□□□□□ -1.83
HMGB1-208ENST00000490788 PCDHGC5Q9Y5F6 944 aa3.64□□□□□ -1.83
HMGB1-208ENST00000490788 OAS3Q9Y6K5 1087 aaKnown RBP3.64□□□□□ -1.83
HMGB1-208ENST00000490788 FAM170BA6NMN3 283 aa3.63□□□□□ -1.83
HMGB1-208ENST00000490788 F6X3S4 739 aa3.63□□□□□ -1.83
HMGB1-208ENST00000490788 MED26O95402 600 aa3.63□□□□□ -1.83
HMGB1-208ENST00000490788 NEFMP07197 916 aa3.63□□□□□ -1.83
HMGB1-208ENST00000490788 FAM87AP0C7U9 286 aa3.63□□□□□ -1.83
HMGB1-208ENST00000490788 TFE3P19532 575 aaPredicted RBP3.63□□□□□ -1.83
HMGB1-208ENST00000490788 RPL6Q02878 288 aaKnown RBP3.63□□□□□ -1.83
HMGB1-208ENST00000490788 CAMK2GQ13555 558 aaPredicted RBP3.63□□□□□ -1.83
HMGB1-208ENST00000490788 ZBTB37Q5TC79 503 aa3.63□□□□□ -1.83
HMGB1-208ENST00000490788 RASIP1Q5U651 963 aa3.63□□□□□ -1.83
HMGB1-208ENST00000490788 LRFN4Q6PJG9 635 aa3.63□□□□□ -1.83
HMGB1-208ENST00000490788 OGFOD3Q6PK18 319 aa3.63□□□□□ -1.83
HMGB1-208ENST00000490788 ZNF765Q7L2R6 523 aa3.63□□□□□ -1.83
HMGB1-208ENST00000490788 CCDC84Q86UT8 332 aaPredicted RBP3.63□□□□□ -1.83
HMGB1-208ENST00000490788 PHC3Q8NDX5 983 aa3.63□□□□□ -1.83
HMGB1-208ENST00000490788 TMEM74Q96NL1 305 aa3.63□□□□□ -1.83
HMGB1-208ENST00000490788 RSRP1Q9BUV0 290 aa3.63□□□□□ -1.83
HMGB1-208ENST00000490788 CACNA2D2Q9NY47 1150 aa3.63□□□□□ -1.83
HMGB1-208ENST00000490788 RBM47A0AV96 593 aaKnown RBP3.62□□□□□ -1.83
HMGB1-208ENST00000490788 DYNC1LI2O43237 492 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-208ENST00000490788 LRIG2O94898 1065 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 PF4P02776 101 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 PGRP06401 933 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 FOSL1P15407 271 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 SPINK2P20155 84 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 GRK4P32298 578 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 ADMP35318 185 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 ZNF76P36508 570 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 CHMP4BP1P59074 171 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 LMNB2Q03252 620 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 FAM160A1Q05DH4 1040 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 PTPN11Q06124 597 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-208ENST00000490788 MLECQ14165 292 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 MRPL58Q14197 206 aaKnown RBP3.62□□□□□ -1.83
HMGB1-208ENST00000490788 INPP5AQ14642 412 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 FBLN7Q53RD9 439 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-208ENST00000490788 HID1Q8IV36 788 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 TOP6BLQ8N6T0 577 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 GOLM1Q8NBJ4 401 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 FBXO41Q8TF61 875 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 GAL3ST3Q96A11 431 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 WNT10AQ9GZT5 417 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 C1GALT1Q9NS00 363 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 KBTBD4Q9NVX7 518 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 GTF2IRD1Q9UHL9 959 aa3.62□□□□□ -1.83
HMGB1-208ENST00000490788 PRR19A6NJB7 356 aa3.61□□□□□ -1.83
HMGB1-208ENST00000490788 GNAT3A8MTJ3 354 aa3.61□□□□□ -1.83
HMGB1-208ENST00000490788 CWF19L2Q2TBE0 894 aaKnown RBP3.61□□□□□ -1.83
HMGB1-208ENST00000490788 ZNF746Q6NUN9 644 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-208ENST00000490788 SEZ6L2Q6UXD5 910 aa3.61□□□□□ -1.83
HMGB1-208ENST00000490788 ARMCX6Q7L4S7 300 aa3.61□□□□□ -1.83
HMGB1-208ENST00000490788 CYFIP1Q7L576 1253 aa3.61□□□□□ -1.83
HMGB1-208ENST00000490788 DTX1Q86Y01 620 aa3.61□□□□□ -1.83
HMGB1-208ENST00000490788 MFSD2AQ8NA29 543 aa3.61□□□□□ -1.83
HMGB1-208ENST00000490788 GATAD2BQ8WXI9 593 aa3.61□□□□□ -1.83
HMGB1-208ENST00000490788 BACH2Q9BYV9 841 aa3.61□□□□□ -1.83
HMGB1-208ENST00000490788 FOXQ1Q9C009 403 aa3.61□□□□□ -1.83
HMGB1-208ENST00000490788 PRDM10Q9NQV6 1147 aa3.61□□□□□ -1.83
HMGB1-208ENST00000490788 TPX2Q9ULW0 747 aaKnown RBP3.61□□□□□ -1.83
HMGB1-208ENST00000490788 SUPT16HQ9Y5B9 1047 aaKnown RBP3.61□□□□□ -1.83
HMGB1-208ENST00000490788 TACC3Q9Y6A5 838 aa3.61□□□□□ -1.83
HMGB1-208ENST00000490788 DISP3Q9P2K9 1392 aa3.61□□□□□ -1.83
HMGB1-208ENST00000490788 WNT11O96014 354 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms