RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 DNAJC18Q9H819 358 aa22.91■■□□□ 1.26
PTCD3-210ENST00000473829 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.91■■□□□ 1.26
PTCD3-210ENST00000473829 TESPA1A2RU30 521 aaPredicted RBP22.9■■□□□ 1.26
PTCD3-210ENST00000473829 IRF6O14896 467 aa22.9■■□□□ 1.26
PTCD3-210ENST00000473829 PPIL2Q13356 520 aa22.9■■□□□ 1.26
PTCD3-210ENST00000473829 RRP1BQ14684 758 aaKnown RBP22.9■■□□□ 1.26
PTCD3-210ENST00000473829 UBE3CQ15386 1083 aa22.9■■□□□ 1.26
PTCD3-210ENST00000473829 IFNL1Q8IU54 200 aa22.9■■□□□ 1.26
PTCD3-210ENST00000473829 SCYL3Q8IZE3 742 aa22.9■■□□□ 1.26
PTCD3-210ENST00000473829 KBTBD3Q8NAB2 608 aa22.9■■□□□ 1.26
PTCD3-210ENST00000473829 BRI3BPQ8WY22 251 aa22.9■■□□□ 1.26
PTCD3-210ENST00000473829 ARMT1Q9H993 441 aa22.9■■□□□ 1.26
PTCD3-210ENST00000473829 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.9■■□□□ 1.26
PTCD3-210ENST00000473829 PI4KBQ9UBF8 816 aa22.9■■□□□ 1.26
PTCD3-210ENST00000473829 ZBTB47Q9UFB7 747 aaPredicted RBP22.9■■□□□ 1.26
PTCD3-210ENST00000473829 ERC2O15083 957 aa22.89■■□□□ 1.25
PTCD3-210ENST00000473829 GLRX3O76003 335 aaKnown RBP22.89■■□□□ 1.25
PTCD3-210ENST00000473829 MBD4O95243 580 aa22.89■■□□□ 1.25
PTCD3-210ENST00000473829 PPATQ06203 517 aa22.89■■□□□ 1.25
PTCD3-210ENST00000473829 TBC1D8O95759 1140 aa22.88■■□□□ 1.25
PTCD3-210ENST00000473829 INHBEP58166 350 aa22.88■■□□□ 1.25
PTCD3-210ENST00000473829 SDR42E1Q8WUS8 393 aa22.88■■□□□ 1.25
PTCD3-210ENST00000473829 CRNKL1Q9BZJ0 848 aaKnown RBP22.88■■□□□ 1.25
PTCD3-210ENST00000473829 R3HDMLQ9H3Y0 253 aa22.88■■□□□ 1.25
PTCD3-210ENST00000473829 STAP2Q9UGK3 403 aa22.88■■□□□ 1.25
PTCD3-210ENST00000473829 HERC5Q9UII4 1024 aaKnown RBP22.88■■□□□ 1.25
PTCD3-210ENST00000473829 PTPRFP10586 1907 aa22.88■■□□□ 1.25
PTCD3-210ENST00000473829 BAZ2AQ9UIF9 1905 aaKnown RBP22.88■■□□□ 1.25
PTCD3-210ENST00000473829 CCL15-CCL14A0A0B4J2E2 113 aa22.87■■□□□ 1.25
PTCD3-210ENST00000473829 CTNND1O60716 968 aaKnown RBP22.87■■□□□ 1.25
PTCD3-210ENST00000473829 GTF2A2P52657 109 aa22.87■■□□□ 1.25
PTCD3-210ENST00000473829 PDE1AP54750 535 aa22.87■■□□□ 1.25
PTCD3-210ENST00000473829 NUCB1Q02818 461 aa22.87■■□□□ 1.25
PTCD3-210ENST00000473829 CCL15Q16663 113 aa22.87■■□□□ 1.25
PTCD3-210ENST00000473829 CCDC84Q86UT8 332 aaPredicted RBP22.87■■□□□ 1.25
PTCD3-210ENST00000473829 METTL16Q86W50 562 aaKnown RBP22.87■■□□□ 1.25
PTCD3-210ENST00000473829 PUS7LQ9H0K6 701 aaKnown RBP22.87■■□□□ 1.25
PTCD3-210ENST00000473829 PRKAB2O43741 272 aa22.86■■□□□ 1.25
PTCD3-210ENST00000473829 PTPRAP18433 802 aa22.86■■□□□ 1.25
PTCD3-210ENST00000473829 EVX2Q03828 476 aa22.86■■□□□ 1.25
PTCD3-210ENST00000473829 ZSCAN25Q6NSZ9 544 aa22.86■■□□□ 1.25
PTCD3-210ENST00000473829 CHD1LQ86WJ1 897 aa22.86■■□□□ 1.25
PTCD3-210ENST00000473829 CFHR5Q9BXR6 569 aa22.85■■□□□ 1.25
PTCD3-210ENST00000473829 PICK1Q9NRD5 415 aa22.85■■□□□ 1.25
PTCD3-210ENST00000473829 KCNH4Q9UQ05 1017 aa22.85■■□□□ 1.25
PTCD3-210ENST00000473829 HLA-DOAP06340 250 aa22.84■■□□□ 1.25
PTCD3-210ENST00000473829 CAP2P40123 477 aa22.84■■□□□ 1.25
PTCD3-210ENST00000473829 JAG1P78504 1218 aa22.84■■□□□ 1.25
PTCD3-210ENST00000473829 SNAPC2Q13487 334 aa22.84■■□□□ 1.25
PTCD3-210ENST00000473829 SHROOM1Q2M3G4 852 aaPredicted RBP22.84■■□□□ 1.25
PTCD3-210ENST00000473829 FOXP4Q8IVH2 680 aaPredicted RBP22.84■■□□□ 1.25
PTCD3-210ENST00000473829 FAM43AQ8N2R8 423 aa22.84■■□□□ 1.25
PTCD3-210ENST00000473829 CRACR2BQ8N4Y2 399 aaPredicted RBP22.84■■□□□ 1.25
PTCD3-210ENST00000473829 OSBP2Q969R2 916 aa22.84■■□□□ 1.25
PTCD3-210ENST00000473829 DCP1AQ9NPI6 582 aaPredicted RBP22.84■■□□□ 1.25
PTCD3-210ENST00000473829 RNF113AO15541 343 aaKnown RBP22.83■■□□□ 1.25
PTCD3-210ENST00000473829 ALDH1A1P00352 501 aa22.83■■□□□ 1.25
PTCD3-210ENST00000473829 CETPP11597 493 aa22.83■■□□□ 1.25
PTCD3-210ENST00000473829 PLCD1P51178 756 aa22.83■■□□□ 1.25
PTCD3-210ENST00000473829 MOGSQ13724 837 aa22.83■■□□□ 1.25
PTCD3-210ENST00000473829 ZHX2Q9Y6X8 837 aa22.83■■□□□ 1.25
PTCD3-210ENST00000473829 CYP2D6P10635 497 aa22.82■■□□□ 1.24
PTCD3-210ENST00000473829 APPBP2Q92624 585 aa22.82■■□□□ 1.24
PTCD3-210ENST00000473829 FSD1Q9BTV5 496 aa22.82■■□□□ 1.24
PTCD3-210ENST00000473829 EHD4Q9H223 541 aa22.82■■□□□ 1.24
PTCD3-210ENST00000473829 MCM9Q9NXL9 1143 aa22.82■■□□□ 1.24
PTCD3-210ENST00000473829 AFG3L2Q9Y4W6 797 aa22.82■■□□□ 1.24
PTCD3-210ENST00000473829 BTBD19C9JJ37 291 aa22.81■■□□□ 1.24
PTCD3-210ENST00000473829 M0R2C6 588 aa22.81■■□□□ 1.24
PTCD3-210ENST00000473829 CRHR2Q13324 411 aa22.81■■□□□ 1.24
PTCD3-210ENST00000473829 TNS4Q8IZW8 715 aa22.81■■□□□ 1.24
PTCD3-210ENST00000473829 SERPINB13Q9UIV8 391 aa22.81■■□□□ 1.24
PTCD3-210ENST00000473829 GPR25O00155 361 aa22.8■■□□□ 1.24
PTCD3-210ENST00000473829 GDF11O95390 407 aa22.8■■□□□ 1.24
PTCD3-210ENST00000473829 ZFYP08048 801 aaPredicted RBP22.8■■□□□ 1.24
PTCD3-210ENST00000473829 OTUD7BQ6GQQ9 843 aa22.8■■□□□ 1.24
PTCD3-210ENST00000473829 TTC6Q86TZ1 520 aa22.8■■□□□ 1.24
PTCD3-210ENST00000473829 PLEKHM2Q8IWE5 1019 aa22.8■■□□□ 1.24
PTCD3-210ENST00000473829 ZNF296Q8WUU4 475 aaPredicted RBP22.8■■□□□ 1.24
PTCD3-210ENST00000473829 STRBPQ96SI9 672 aaKnown RBP22.8■■□□□ 1.24
PTCD3-210ENST00000473829 TRIM34Q9BYJ4 488 aa22.8■■□□□ 1.24
PTCD3-210ENST00000473829 SLC4A4Q9Y6R1 1079 aa22.8■■□□□ 1.24
PTCD3-210ENST00000473829 LOC285556D6RIA3 1793 aa22.79■■□□□ 1.24
PTCD3-210ENST00000473829 SMIM22K7EJ46 135 aa22.79■■□□□ 1.24
PTCD3-210ENST00000473829 CXCL11O14625 94 aa22.79■■□□□ 1.24
PTCD3-210ENST00000473829 POLR3DP05423 398 aaPredicted RBP22.79■■□□□ 1.24
PTCD3-210ENST00000473829 GABPAQ06546 454 aa22.79■■□□□ 1.24
PTCD3-210ENST00000473829 SEC62Q99442 399 aaKnown RBP22.79■■□□□ 1.24
PTCD3-210ENST00000473829 ATP8A2Q9NTI2 1148 aa22.79■■□□□ 1.24
PTCD3-210ENST00000473829 CYP2D7A0A087X1C5 515 aa22.78■■□□□ 1.24
PTCD3-210ENST00000473829 A0A0G2JLL6 359 aaPredicted RBP22.78■■□□□ 1.24
PTCD3-210ENST00000473829 TRIM75PA6NK02 468 aa22.78■■□□□ 1.24
PTCD3-210ENST00000473829 SHMT1P34896 483 aa22.78■■□□□ 1.24
PTCD3-210ENST00000473829 NOM1Q5C9Z4 860 aaKnown RBP22.78■■□□□ 1.24
PTCD3-210ENST00000473829 TATDN1Q6P1N9 297 aa22.78■■□□□ 1.24
PTCD3-210ENST00000473829 PRRT2Q7Z6L0 340 aaPredicted RBP22.78■■□□□ 1.24
PTCD3-210ENST00000473829 MYH8P13535 1937 aa22.78■■□□□ 1.24
PTCD3-210ENST00000473829 GPAA1O43292 621 aa22.77■■□□□ 1.24
PTCD3-210ENST00000473829 PDE4AP27815 886 aa22.77■■□□□ 1.24
PTCD3-210ENST00000473829 TAF1CQ15572 869 aaPredicted RBP22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms