RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 APBA3O96018 575 aa15.82■□□□□ 0.12
CCDC88A-211ENST00000471947 STX1AQ16623 288 aa15.82■□□□□ 0.12
CCDC88A-211ENST00000471947 JMYQ8N9B5 988 aa15.82■□□□□ 0.12
CCDC88A-211ENST00000471947 UBA5Q9GZZ9 404 aa15.82■□□□□ 0.12
CCDC88A-211ENST00000471947 SMYD4Q8IYR2 804 aaPredicted RBP15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 VGLL2Q8N8G2 317 aa15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 NYXQ9GZU5 481 aa15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 LY9Q9HBG7 655 aa15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 PCDHB6Q9Y5E3 794 aa15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 ABCC12Q96J65 1359 aa15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 SERPINB2P05120 415 aa15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 SSBP05455 408 aaKnown RBP eCLIP15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 USP49Q70CQ1 688 aa15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 TEX11Q8IYF3 940 aa15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 KCNB2Q92953 911 aa15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 PLA2G12BQ9BX93 195 aa15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 CNNM2Q9H8M5 875 aa15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 BRMS1Q9HCU9 246 aa15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 NOL7Q9UMY1 257 aaKnown RBP15.81■□□□□ 0.12
CCDC88A-211ENST00000471947 WDHD1O75717 1129 aaPredicted RBP15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 LINC00301Q8NCQ3 95 aa15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 NAT10Q9H0A0 1025 aaKnown RBP15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 BLZF1Q9H2G9 400 aa15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 PDE4BQ07343 736 aa15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 TSGA10IPQ3SY00 556 aa15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 DBNDD1Q9H9R9 158 aa15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 RPS6KA4O75676 772 aa15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 KIAA0825Q8IV33 1275 aa15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 SMARCC2Q8TAQ2 1214 aa15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 KCNG4Q8TDN1 519 aa15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 SH3RF3Q8TEJ3 882 aaPredicted RBP15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 TMEM87BQ96K49 555 aa15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 TRIM34Q9BYJ4 488 aa15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 TACC3Q9Y6A5 838 aa15.8■□□□□ 0.12
CCDC88A-211ENST00000471947 VEGFAP15692 232 aaPredicted RBP15.79■□□□□ 0.12
CCDC88A-211ENST00000471947 ST5P78524 1137 aa15.79■□□□□ 0.12
CCDC88A-211ENST00000471947 GPCPD1Q9NPB8 672 aa15.79■□□□□ 0.12
CCDC88A-211ENST00000471947 ZMYM6O95789 1325 aa15.79■□□□□ 0.12
CCDC88A-211ENST00000471947 CCDC196A0A1B0GTZ2 297 aa15.79■□□□□ 0.12
CCDC88A-211ENST00000471947 NARFQ9UHQ1 456 aa15.79■□□□□ 0.12
CCDC88A-211ENST00000471947 ARID4AP29374 1257 aaPredicted RBP15.79■□□□□ 0.12
CCDC88A-211ENST00000471947 ZC3H12CQ9C0D7 883 aaKnown RBP15.79■□□□□ 0.12
CCDC88A-211ENST00000471947 BSDC1Q9NW68 430 aaPredicted RBP15.79■□□□□ 0.12
CCDC88A-211ENST00000471947 FRMPD2Q68DX3 1309 aaPredicted RBP15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 ATP1A3P13637 1013 aa15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 CCDC96Q2M329 555 aa15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 ILDR1Q86SU0 546 aaPredicted RBP15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 IGDCC4Q8TDY8 1250 aa15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 GJD4Q96KN9 370 aaPredicted RBP15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 ZSCAN10Q96SZ4 725 aaPredicted RBP15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 ZHX3Q9H4I2 956 aa15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 FBXO3Q9UK99 471 aa15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 LRRC47Q8N1G4 583 aaKnown RBP15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 BCL2L12Q9HB09 334 aa15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 SERTAD1Q9UHV2 236 aa15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 RCOR1Q9UKL0 485 aa15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 KCNH3Q9ULD8 1083 aa15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 FGFR2P21802 821 aa15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 UBE4AQ14139 1066 aa15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 ENAHQ8N8S7 591 aaPredicted RBP15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 LRRC4BQ9NT99 713 aa15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 RIC1Q4ADV7 1423 aa15.78■□□□□ 0.12
CCDC88A-211ENST00000471947 TNS2Q63HR2 1409 aa15.77■□□□□ 0.12
CCDC88A-211ENST00000471947 EPSTI1Q96J88 318 aa15.77■□□□□ 0.11
CCDC88A-211ENST00000471947 PCMTD1Q96MG8 357 aaPredicted RBP15.77■□□□□ 0.11
CCDC88A-211ENST00000471947 GGA1Q9UJY5 639 aa15.77■□□□□ 0.11
CCDC88A-211ENST00000471947 MARF1Q9Y4F3 1742 aaKnown RBP15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 GNAT2P19087 354 aa15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 LONRF3Q496Y0 759 aa15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 STRCP1A6NGW2 1772 aa15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 BAG3O95817 575 aa15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 SKILP12757 684 aa15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 BTDP43251 543 aa15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 JAKMIP3Q5VZ66 844 aa15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 CRACR2BQ8N4Y2 399 aaPredicted RBP15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 CCDC194A0A1B0GVG4 234 aa15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 CTR9Q6PD62 1173 aa15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 ZNF804AQ7Z570 1209 aa15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 NOSTRINQ8IVI9 506 aa15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 STAG2Q8N3U4 1231 aa15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 WASF1Q92558 559 aa15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.76■□□□□ 0.11
CCDC88A-211ENST00000471947 C5P01031 1676 aa15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 TRIM75PA6NK02 468 aa15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 ZNF75DP51815 510 aa15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 USP17L2Q6R6M4 530 aa15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 TMEM87AQ8NBN3 555 aa15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 DCP1AQ9NPI6 582 aaPredicted RBP15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 THRAP3Q9Y2W1 955 aaKnown RBP15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 TCRBV5S4A2TA0A5A2 114 aa15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 ZYXQ15942 572 aaKnown RBP15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 RBM26Q5T8P6 1007 aaKnown RBP15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 ADALQ6DHV7 355 aa15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 TNNT1P13805 278 aa15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 GPSM2P81274 684 aa15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 CCDC144BQ3MJ40 725 aa15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 ANKRD2Q9GZV1 360 aa15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 PCDHA5Q9Y5H7 936 aa15.75■□□□□ 0.11
CCDC88A-211ENST00000471947 CACNA1FO60840 1977 aa15.74■□□□□ 0.11
CCDC88A-211ENST00000471947 NRDCO43847 1150 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms