RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 FGAP02671 866 aa20.28■□□□□ 0.84
COL7A1-202ENST00000422991 PLCD1P51178 756 aa20.28■□□□□ 0.84
COL7A1-202ENST00000422991 PTH1RQ03431 593 aa20.28■□□□□ 0.84
COL7A1-202ENST00000422991 METTL16Q86W50 562 aaKnown RBP20.28■□□□□ 0.84
COL7A1-202ENST00000422991 AMOTL1Q8IY63 956 aa20.28■□□□□ 0.84
COL7A1-202ENST00000422991 LSG1Q9H089 658 aaKnown RBP20.28■□□□□ 0.84
COL7A1-202ENST00000422991 ZNF408Q9H9D4 720 aa20.28■□□□□ 0.84
COL7A1-202ENST00000422991 MAP3K10Q02779 954 aa20.27■□□□□ 0.84
COL7A1-202ENST00000422991 CST9Q5W186 159 aa20.27■□□□□ 0.84
COL7A1-202ENST00000422991 DCAF15Q66K64 600 aa20.27■□□□□ 0.84
COL7A1-202ENST00000422991 HERC5Q9UII4 1024 aaKnown RBP20.27■□□□□ 0.84
COL7A1-202ENST00000422991 ATAD5Q96QE3 1844 aa20.26■□□□□ 0.83
COL7A1-202ENST00000422991 SMIM22K7EJ46 135 aa20.26■□□□□ 0.83
COL7A1-202ENST00000422991 TBC1D12O60347 775 aa20.26■□□□□ 0.83
COL7A1-202ENST00000422991 SLURP2P0DP57 97 aa20.26■□□□□ 0.83
COL7A1-202ENST00000422991 KIAA1211Q6ZU35 1233 aa20.26■□□□□ 0.83
COL7A1-202ENST00000422991 MIGA2Q7L4E1 593 aa20.26■□□□□ 0.83
COL7A1-202ENST00000422991 DNAJC18Q9H819 358 aa20.26■□□□□ 0.83
COL7A1-202ENST00000422991 ANO2Q9NQ90 1003 aa20.26■□□□□ 0.83
COL7A1-202ENST00000422991 SERPINB13Q9UIV8 391 aa20.26■□□□□ 0.83
COL7A1-202ENST00000422991 DOCK1Q14185 1865 aa20.25■□□□□ 0.83
COL7A1-202ENST00000422991 FAM196BA6NMK8 535 aa20.25■□□□□ 0.83
COL7A1-202ENST00000422991 MINDY4BA8MYZ0 360 aa20.25■□□□□ 0.83
COL7A1-202ENST00000422991 GABPAQ06546 454 aa20.25■□□□□ 0.83
COL7A1-202ENST00000422991 PPARAQ07869 468 aa20.25■□□□□ 0.83
COL7A1-202ENST00000422991 C8orf34Q49A92 452 aa20.25■□□□□ 0.83
COL7A1-202ENST00000422991 FOXP4Q8IVH2 680 aaPredicted RBP20.25■□□□□ 0.83
COL7A1-202ENST00000422991 CRACR2BQ8N4Y2 399 aaPredicted RBP20.25■□□□□ 0.83
COL7A1-202ENST00000422991 MAP4K1Q92918 833 aa20.25■□□□□ 0.83
COL7A1-202ENST00000422991 GBA2Q9HCG7 927 aaPredicted RBP20.25■□□□□ 0.83
COL7A1-202ENST00000422991 FZD1Q9UP38 647 aa20.25■□□□□ 0.83
COL7A1-202ENST00000422991 PPP1R12BO60237 982 aaPredicted RBP20.24■□□□□ 0.83
COL7A1-202ENST00000422991 FKBP1BP68106 108 aa20.24■□□□□ 0.83
COL7A1-202ENST00000422991 PRKG1Q13976 671 aa20.24■□□□□ 0.83
COL7A1-202ENST00000422991 DYNLL2Q96FJ2 89 aa20.24■□□□□ 0.83
COL7A1-202ENST00000422991 ZNF341Q9BYN7 854 aa20.24■□□□□ 0.83
COL7A1-202ENST00000422991 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.24■□□□□ 0.83
COL7A1-202ENST00000422991 CTNNA3Q9UI47 895 aa20.24■□□□□ 0.83
COL7A1-202ENST00000422991 ANAPC4Q9UJX5 808 aa20.24■□□□□ 0.83
COL7A1-202ENST00000422991 TAOK2Q9UL54 1235 aa20.24■□□□□ 0.83
COL7A1-202ENST00000422991 U3KPZ7 1027 aaPredicted RBP20.24■□□□□ 0.83
COL7A1-202ENST00000422991 RASSF10A6NK89 507 aa20.23■□□□□ 0.83
COL7A1-202ENST00000422991 USP2O75604 605 aaPredicted RBP20.23■□□□□ 0.83
COL7A1-202ENST00000422991 REC8O95072 547 aa20.23■□□□□ 0.83
COL7A1-202ENST00000422991 MAP3K11Q16584 847 aa20.23■□□□□ 0.83
COL7A1-202ENST00000422991 C16orf86Q6ZW13 317 aa20.23■□□□□ 0.83
COL7A1-202ENST00000422991 TRIM34Q9BYJ4 488 aa20.23■□□□□ 0.83
COL7A1-202ENST00000422991 ZNF112Q9UJU3 913 aa20.23■□□□□ 0.83
COL7A1-202ENST00000422991 ABT1Q9ULW3 272 aaKnown RBP20.23■□□□□ 0.83
COL7A1-202ENST00000422991 RBM8AQ9Y5S9 174 aaKnown RBP20.23■□□□□ 0.83
COL7A1-202ENST00000422991 PHF20L1A8MW92 1017 aa20.22■□□□□ 0.83
COL7A1-202ENST00000422991 SHMT1P34896 483 aa20.22■□□□□ 0.83
COL7A1-202ENST00000422991 IREB2P48200 963 aaKnown RBP20.22■□□□□ 0.83
COL7A1-202ENST00000422991 TTLL12Q14166 644 aaPredicted RBP20.22■□□□□ 0.83
COL7A1-202ENST00000422991 MOB2Q70IA6 237 aa20.22■□□□□ 0.83
COL7A1-202ENST00000422991 ARMC9Q7Z3E5 817 aa20.22■□□□□ 0.83
COL7A1-202ENST00000422991 C2orf69Q8N8R5 385 aa20.22■□□□□ 0.83
COL7A1-202ENST00000422991 SLC44A5Q8NCS7 719 aa20.22■□□□□ 0.83
COL7A1-202ENST00000422991 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.22■□□□□ 0.83
COL7A1-202ENST00000422991 NBPF3Q9H094 633 aa20.22■□□□□ 0.83
COL7A1-202ENST00000422991 SWAP70Q9UH65 585 aa20.22■□□□□ 0.83
COL7A1-202ENST00000422991 ANGEL1Q9UNK9 670 aaKnown RBP20.22■□□□□ 0.83
COL7A1-202ENST00000422991 HAND2P61296 217 aa20.21■□□□□ 0.83
COL7A1-202ENST00000422991 CTDSPL2Q05D32 466 aa20.21■□□□□ 0.83
COL7A1-202ENST00000422991 IMMTQ16891 758 aaKnown RBP20.21■□□□□ 0.83
COL7A1-202ENST00000422991 DEFB115Q30KQ5 88 aa20.21■□□□□ 0.83
COL7A1-202ENST00000422991 WRNIP1Q96S55 665 aa20.21■□□□□ 0.83
COL7A1-202ENST00000422991 GREB1LQ9C091 1923 aaPredicted RBP20.2■□□□□ 0.82
COL7A1-202ENST00000422991 SLC3A2P08195 630 aaKnown RBP20.2■□□□□ 0.82
COL7A1-202ENST00000422991 CDK8P49336 464 aa20.2■□□□□ 0.82
COL7A1-202ENST00000422991 TATDN1Q6P1N9 297 aa20.2■□□□□ 0.82
COL7A1-202ENST00000422991 TBC1D10CQ8IV04 446 aa20.2■□□□□ 0.82
COL7A1-202ENST00000422991 UBE2Q2LH0YL09 131 aa20.19■□□□□ 0.82
COL7A1-202ENST00000422991 ZNF213O14771 459 aa20.19■□□□□ 0.82
COL7A1-202ENST00000422991 INPP5BP32019 993 aa20.19■□□□□ 0.82
COL7A1-202ENST00000422991 VEGFBP49765 207 aa20.19■□□□□ 0.82
COL7A1-202ENST00000422991 RRP1BQ14684 758 aaKnown RBP20.19■□□□□ 0.82
COL7A1-202ENST00000422991 LDLRAD1Q5T700 205 aa20.19■□□□□ 0.82
COL7A1-202ENST00000422991 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.19■□□□□ 0.82
COL7A1-202ENST00000422991 TACC3Q9Y6A5 838 aa20.19■□□□□ 0.82
COL7A1-202ENST00000422991 EPB41L2O43491 1005 aaKnown RBP20.18■□□□□ 0.82
COL7A1-202ENST00000422991 CYP21A2P08686 494 aa20.18■□□□□ 0.82
COL7A1-202ENST00000422991 PDE4BQ07343 736 aa20.18■□□□□ 0.82
COL7A1-202ENST00000422991 NECTIN1Q15223 517 aa20.18■□□□□ 0.82
COL7A1-202ENST00000422991 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.18■□□□□ 0.82
COL7A1-202ENST00000422991 STK11IPQ8N1F8 1099 aa20.18■□□□□ 0.82
COL7A1-202ENST00000422991 TLL2Q9Y6L7 1015 aa20.18■□□□□ 0.82
COL7A1-202ENST00000422991 PHIPQ8WWQ0 1821 aa20.18■□□□□ 0.82
COL7A1-202ENST00000422991 UNCXA6NJT0 531 aa20.17■□□□□ 0.82
COL7A1-202ENST00000422991 CTNND1O60716 968 aaKnown RBP20.17■□□□□ 0.82
COL7A1-202ENST00000422991 EIF5BO60841 1220 aaKnown RBP20.17■□□□□ 0.82
COL7A1-202ENST00000422991 FGRP09769 529 aa20.17■□□□□ 0.82
COL7A1-202ENST00000422991 RASA1P20936 1047 aa20.17■□□□□ 0.82
COL7A1-202ENST00000422991 CAP2P40123 477 aa20.17■□□□□ 0.82
COL7A1-202ENST00000422991 HUNKP57058 714 aa20.17■□□□□ 0.82
COL7A1-202ENST00000422991 MAP3K9P80192 1104 aa20.17■□□□□ 0.82
COL7A1-202ENST00000422991 VGLL4Q14135 290 aa20.17■□□□□ 0.82
COL7A1-202ENST00000422991 NOL9Q5SY16 702 aaKnown RBP20.17■□□□□ 0.82
COL7A1-202ENST00000422991 AKNAD1Q5T1N1 836 aa20.17■□□□□ 0.82
COL7A1-202ENST00000422991 SAPCD2Q86UD0 394 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms