RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 SRCAPQ6ZRS2 3230 aa31.57■■■□□ 2.64
MSX1-201ENST00000382723 FZD9O00144 591 aa31.56■■■□□ 2.64
MSX1-201ENST00000382723 ORC4O43929 436 aa31.56■■■□□ 2.64
MSX1-201ENST00000382723 DTNBO60941 627 aa31.56■■■□□ 2.64
MSX1-201ENST00000382723 IGDCC4Q8TDY8 1250 aa31.56■■■□□ 2.64
MSX1-201ENST00000382723 ZSCAN21Q9Y5A6 473 aaPredicted RBP31.56■■■□□ 2.64
MSX1-201ENST00000382723 ROBO3Q96MS0 1386 aa31.56■■■□□ 2.64
MSX1-201ENST00000382723 DLGAP5Q15398 846 aa31.55■■■□□ 2.64
MSX1-201ENST00000382723 BRPF3Q9ULD4 1205 aa31.55■■■□□ 2.64
MSX1-201ENST00000382723 GJA3Q9Y6H8 435 aa31.55■■■□□ 2.64
MSX1-201ENST00000382723 KLF18A0A0U1RQI7 1052 aa31.55■■■□□ 2.64
MSX1-201ENST00000382723 YBX3P16989 372 aaKnown RBP eCLIP31.55■■■□□ 2.64
MSX1-201ENST00000382723 SLC44A5Q8NCS7 719 aa31.55■■■□□ 2.64
MSX1-201ENST00000382723 OSBPL5Q9H0X9 879 aaPredicted RBP31.55■■■□□ 2.64
MSX1-201ENST00000382723 SENP2Q9HC62 589 aa31.55■■■□□ 2.64
MSX1-201ENST00000382723 SPDYE2BA6NHP3 402 aa31.54■■■□□ 2.64
MSX1-201ENST00000382723 SPDYE6P0CI01 402 aa31.54■■■□□ 2.64
MSX1-201ENST00000382723 LMNB1P20700 586 aa31.54■■■□□ 2.64
MSX1-201ENST00000382723 PDIA3P30101 505 aaKnown RBP31.54■■■□□ 2.64
MSX1-201ENST00000382723 TCP10Q12799 353 aa31.54■■■□□ 2.64
MSX1-201ENST00000382723 SART3Q15020 963 aaKnown RBP31.54■■■□□ 2.64
MSX1-201ENST00000382723 UBAC1Q9BSL1 405 aa31.54■■■□□ 2.64
MSX1-201ENST00000382723 LY9Q9HBG7 655 aa31.54■■■□□ 2.64
MSX1-201ENST00000382723 MKNK2Q9HBH9 465 aa31.54■■■□□ 2.64
MSX1-201ENST00000382723 FAM47AQ5JRC9 791 aa31.53■■■□□ 2.64
MSX1-201ENST00000382723 GTF3C6Q969F1 213 aa31.53■■■□□ 2.64
MSX1-201ENST00000382723 ZNF274Q96GC6 653 aaPredicted RBP31.53■■■□□ 2.64
MSX1-201ENST00000382723 DDX60LQ5H9U9 1706 aaKnown RBP31.53■■■□□ 2.64
MSX1-201ENST00000382723 NFXL1Q6ZNB6 911 aa31.53■■■□□ 2.64
MSX1-201ENST00000382723 ZFPM1Q8IX07 1006 aa31.53■■■□□ 2.64
MSX1-201ENST00000382723 SHTN1A0MZ66 631 aa31.52■■■□□ 2.64
MSX1-201ENST00000382723 ERICH2A1L162 156 aa31.52■■■□□ 2.64
MSX1-201ENST00000382723 PFKFB2O60825 505 aa31.52■■■□□ 2.64
MSX1-201ENST00000382723 EVCP57679 992 aa31.52■■■□□ 2.64
MSX1-201ENST00000382723 CCT2P78371 535 aaKnown RBP31.52■■■□□ 2.64
MSX1-201ENST00000382723 IDI2Q9BXS1 227 aa31.52■■■□□ 2.64
MSX1-201ENST00000382723 FAM198AQ9UFP1 575 aa31.52■■■□□ 2.64
MSX1-201ENST00000382723 CIZ1Q9ULV3 898 aaPredicted RBP31.52■■■□□ 2.64
MSX1-201ENST00000382723 SMC3Q9UQE7 1217 aa31.52■■■□□ 2.64
MSX1-201ENST00000382723 FOCADQ5VW36 1801 aa31.52■■■□□ 2.64
MSX1-201ENST00000382723 SCRN1Q12765 414 aa31.51■■■□□ 2.64
MSX1-201ENST00000382723 TTC6Q86TZ1 520 aa31.51■■■□□ 2.64
MSX1-201ENST00000382723 RAB11FIP4Q86YS3 637 aa31.51■■■□□ 2.64
MSX1-201ENST00000382723 UTRNP46939 3433 aa31.51■■■□□ 2.64
MSX1-201ENST00000382723 ZNF541Q9H0D2 1346 aa31.51■■■□□ 2.63
MSX1-201ENST00000382723 GOLGA8BA8MQT2 603 aa31.51■■■□□ 2.63
MSX1-201ENST00000382723 TSPY2A6NKD2 308 aa31.5■■■□□ 2.63
MSX1-201ENST00000382723 WTAPQ15007 396 aa31.5■■■□□ 2.63
MSX1-201ENST00000382723 C16orf86Q6ZW13 317 aa31.5■■■□□ 2.63
MSX1-201ENST00000382723 ZSCAN10Q96SZ4 725 aaPredicted RBP31.5■■■□□ 2.63
MSX1-201ENST00000382723 CLRN2A0PK11 232 aa31.49■■■□□ 2.63
MSX1-201ENST00000382723 RPS12P25398 132 aaKnown RBP31.49■■■□□ 2.63
MSX1-201ENST00000382723 CDK8P49336 464 aa31.49■■■□□ 2.63
MSX1-201ENST00000382723 GMPSP49915 693 aaPredicted RBP31.49■■■□□ 2.63
MSX1-201ENST00000382723 IQCA1Q86XH1 822 aa31.49■■■□□ 2.63
MSX1-201ENST00000382723 NCOA5Q9HCD5 579 aaKnown RBP31.49■■■□□ 2.63
MSX1-201ENST00000382723 TNKSO95271 1327 aa31.49■■■□□ 2.63
MSX1-201ENST00000382723 LIFRP42702 1097 aa31.49■■■□□ 2.63
MSX1-201ENST00000382723 MTA3Q9BTC8 594 aa31.49■■■□□ 2.63
MSX1-201ENST00000382723 ZNF287Q9HBT7 754 aa31.49■■■□□ 2.63
MSX1-201ENST00000382723 MYH1P12882 1939 aa31.48■■■□□ 2.63
MSX1-201ENST00000382723 CCDC69A6NI79 296 aa31.48■■■□□ 2.63
MSX1-201ENST00000382723 ZNF444Q8N0Y2 327 aaPredicted RBP31.48■■■□□ 2.63
MSX1-201ENST00000382723 MYOZ2Q9NPC6 264 aa31.48■■■□□ 2.63
MSX1-201ENST00000382723 TMOD2Q9NZR1 351 aa31.48■■■□□ 2.63
MSX1-201ENST00000382723 ECM29Q5VYK3 1845 aa31.48■■■□□ 2.63
MSX1-201ENST00000382723 TFAP4Q01664 338 aa31.47■■■□□ 2.63
MSX1-201ENST00000382723 SGMS1Q86VZ5 419 aa31.47■■■□□ 2.63
MSX1-201ENST00000382723 HLA-DOAP06340 250 aa31.47■■■□□ 2.63
MSX1-201ENST00000382723 GJB2P29033 226 aa31.47■■■□□ 2.63
MSX1-201ENST00000382723 ZSCAN29Q8IWY8 852 aaPredicted RBP31.47■■■□□ 2.63
MSX1-201ENST00000382723 MTMR14Q8NCE2 650 aa31.47■■■□□ 2.63
MSX1-201ENST00000382723 ZNF70Q9UC06 446 aaPredicted RBP31.47■■■□□ 2.63
MSX1-201ENST00000382723 HPS5Q9UPZ3 1129 aa31.47■■■□□ 2.63
MSX1-201ENST00000382723 NMT2O60551 498 aa31.46■■■□□ 2.63
MSX1-201ENST00000382723 APOA5Q6Q788 366 aa31.46■■■□□ 2.63
MSX1-201ENST00000382723 ENAHQ8N8S7 591 aaPredicted RBP31.46■■■□□ 2.63
MSX1-201ENST00000382723 TCP10L2B9ZVM9 353 aa31.45■■■□□ 2.63
MSX1-201ENST00000382723 RASA1P20936 1047 aa31.45■■■□□ 2.63
MSX1-201ENST00000382723 SEC23AQ15436 765 aa31.45■■■□□ 2.63
MSX1-201ENST00000382723 RBM26Q5T8P6 1007 aaKnown RBP31.45■■■□□ 2.63
MSX1-201ENST00000382723 SLC12A7Q9Y666 1083 aa31.45■■■□□ 2.63
MSX1-201ENST00000382723 RXRAP19793 462 aa31.45■■■□□ 2.62
MSX1-201ENST00000382723 PKP1Q13835 747 aa31.45■■■□□ 2.62
MSX1-201ENST00000382723 MICALL2Q8IY33 904 aa31.45■■■□□ 2.62
MSX1-201ENST00000382723 MYL10Q9BUA6 226 aa31.45■■■□□ 2.62
MSX1-201ENST00000382723 SERPINB13Q9UIV8 391 aa31.45■■■□□ 2.62
MSX1-201ENST00000382723 DDTLA6NHG4 134 aaPredicted RBP31.44■■■□□ 2.62
MSX1-201ENST00000382723 NPM3O75607 178 aaKnown RBP31.44■■■□□ 2.62
MSX1-201ENST00000382723 TSPY3P0CV98 308 aa31.44■■■□□ 2.62
MSX1-201ENST00000382723 TSPY8P0CW00 308 aa31.44■■■□□ 2.62
MSX1-201ENST00000382723 ZNF280AP59817 542 aaPredicted RBP31.44■■■□□ 2.62
MSX1-201ENST00000382723 MICU3Q86XE3 530 aa31.44■■■□□ 2.62
MSX1-201ENST00000382723 TMTC2Q8N394 836 aa31.44■■■□□ 2.62
MSX1-201ENST00000382723 DHX36Q9H2U1 1008 aaKnown RBP31.44■■■□□ 2.62
MSX1-201ENST00000382723 VEZTQ9HBM0 779 aa31.44■■■□□ 2.62
MSX1-201ENST00000382723 GABPAQ06546 454 aa31.43■■■□□ 2.62
MSX1-201ENST00000382723 NBPF9Q3BBW0 867 aa31.43■■■□□ 2.62
MSX1-201ENST00000382723 SPDYE2Q495Y8 402 aa31.43■■■□□ 2.62
MSX1-201ENST00000382723 SH3BP5LQ7L8J4 393 aa31.43■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms