RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 HAND2P61296 217 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 GPATCH11Q8N954 259 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 LRRC59Q96AG4 307 aaKnown RBP13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 GDAP1L1Q96MZ0 367 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 CEP89Q96ST8 783 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 DNAJC5Q9H3Z4 198 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 CXorf56Q9H5V9 222 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 HELLSQ9NRZ9 838 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 ADD3Q9UEY8 706 aaKnown RBP13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 KCNH3Q9ULD8 1083 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 AKAP11Q9UKA4 1901 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 KDM6AO15550 1401 aaPredicted RBP13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 SCN11AQ9UI33 1791 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 MYCNP04198 464 aaPredicted RBP13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 NTRK3Q16288 839 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 CEP112Q8N8E3 955 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 CCDC102AQ96A19 550 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 NUP188Q5SRE5 1749 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 KLF18A0A0U1RQI7 1052 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 MFAP3LO75121 409 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 SKIDA1Q1XH10 827 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 SHISA4Q96DD7 197 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 VIPAS39Q9H9C1 493 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 MED4Q9NPJ6 270 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 PAG1Q9NWQ8 432 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 RGPD5Q99666 1765 aa13.31□□□□□ -0.28
SMARCA1-201ENST00000371121 OVOS2A0A0G2JMS6 1433 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 RNMTO43148 476 aaKnown RBP13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 ACTN4O43707 911 aaKnown RBP13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 CASP14P31944 242 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 CUL4BQ13620 913 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 CDKAL1Q5VV42 579 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 MMS19Q96T76 1030 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 TMEM94Q12767 1356 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 LRP6O75581 1613 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 AKR1B15C9JRZ8 316 aaPredicted RBP13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 ZMYND10O75800 440 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 CASP1P29466 404 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 LIG3P49916 1009 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 TIMM10P62072 90 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 TRAPPC11Q7Z392 1133 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 A0A087WUV0 522 aaPredicted RBP13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 COBLO75128 1261 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 RXRAP19793 462 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 IRAK1P51617 712 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 PHKBQ93100 1093 aa13.3□□□□□ -0.28
SMARCA1-201ENST00000371121 CPDO75976 1380 aa13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 GOLGA8BA8MQT2 603 aa13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 SRGAP2O75044 1071 aa13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 PIP4K2AP48426 406 aaPredicted RBP13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 ZRSR1Q15695 479 aaKnown RBP13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 GOLGA6L1Q8N7Z2 621 aa13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 DDX21Q9NR30 783 aaKnown RBP eCLIP13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 FBXO2Q9UK22 296 aaPredicted RBP13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 PDE2AO00408 941 aaPredicted RBP13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 SH2B2O14492 632 aaPredicted RBP13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 AKAP4Q5JQC9 854 aa13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 ELOA2Q8IYF1 753 aaPredicted RBP13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 CPLX3Q8WVH0 158 aa13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 TACC3Q9Y6A5 838 aa13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 PRC1O43663 620 aa13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 USP14P54578 494 aa13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 POSTNQ15063 836 aa13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 KRT40Q6A162 431 aa13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 MICALL1Q8N3F8 863 aa13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 RABEP2Q9H5N1 569 aa13.29□□□□□ -0.28
SMARCA1-201ENST00000371121 FGAP02671 866 aa13.28□□□□□ -0.28
SMARCA1-201ENST00000371121 CCT5P48643 541 aa13.28□□□□□ -0.28
SMARCA1-201ENST00000371121 CYB5R4Q7L1T6 521 aa13.28□□□□□ -0.28
SMARCA1-201ENST00000371121 AFAP1L1Q8TED9 768 aa13.28□□□□□ -0.28
SMARCA1-201ENST00000371121 COG1Q8WTW3 980 aa13.28□□□□□ -0.28
SMARCA1-201ENST00000371121 SERTAD1Q9UHV2 236 aa13.28□□□□□ -0.28
SMARCA1-201ENST00000371121 FAM169AQ9Y6X4 670 aa13.28□□□□□ -0.28
SMARCA1-201ENST00000371121 CHD4Q14839 1912 aa13.28□□□□□ -0.28
SMARCA1-201ENST00000371121 ENC1O14682 589 aa13.28□□□□□ -0.28
SMARCA1-201ENST00000371121 HSP90AB3PQ58FF7 597 aa13.28□□□□□ -0.28
SMARCA1-201ENST00000371121 DNAJC21Q5F1R6 531 aaKnown RBP13.28□□□□□ -0.28
SMARCA1-201ENST00000371121 UBN2Q6ZU65 1347 aa13.28□□□□□ -0.28
SMARCA1-201ENST00000371121 CCDC189A1A4V9 331 aa13.27□□□□□ -0.28
SMARCA1-201ENST00000371121 CTAGE9A4FU28 777 aa13.27□□□□□ -0.28
SMARCA1-201ENST00000371121 GUCY1A2P33402 732 aa13.27□□□□□ -0.28
SMARCA1-201ENST00000371121 FOXO4P98177 505 aa13.27□□□□□ -0.28
SMARCA1-201ENST00000371121 CNPY4Q8N129 248 aa13.27□□□□□ -0.28
SMARCA1-201ENST00000371121 PRPF38AQ8NAV1 312 aaKnown RBP13.27□□□□□ -0.28
SMARCA1-201ENST00000371121 HDAC5Q9UQL6 1122 aa13.27□□□□□ -0.28
SMARCA1-201ENST00000371121 ALS2Q96Q42 1657 aa13.27□□□□□ -0.28
SMARCA1-201ENST00000371121 MAP3K15Q6ZN16 1313 aa13.27□□□□□ -0.28
SMARCA1-201ENST00000371121 EIF3JO75822 258 aaKnown RBP13.27□□□□□ -0.29
SMARCA1-201ENST00000371121 RRP36Q96EU6 259 aaKnown RBP13.27□□□□□ -0.29
SMARCA1-201ENST00000371121 CHP1Q99653 195 aa13.27□□□□□ -0.29
SMARCA1-201ENST00000371121 MYD88Q99836 296 aa13.27□□□□□ -0.29
SMARCA1-201ENST00000371121 ATP1A1P05023 1023 aaKnown RBP13.27□□□□□ -0.29
SMARCA1-201ENST00000371121 KIF4BQ2VIQ3 1234 aa13.27□□□□□ -0.29
SMARCA1-201ENST00000371121 SYNE3Q6ZMZ3 975 aa13.27□□□□□ -0.29
SMARCA1-201ENST00000371121 SMYD4Q8IYR2 804 aaPredicted RBP13.27□□□□□ -0.29
SMARCA1-201ENST00000371121 SH3GL2Q99962 352 aa13.27□□□□□ -0.29
SMARCA1-201ENST00000371121 HINFPQ9BQA5 517 aa13.27□□□□□ -0.29
SMARCA1-201ENST00000371121 PUS7LQ9H0K6 701 aaKnown RBP13.27□□□□□ -0.29
SMARCA1-201ENST00000371121 ZMYM6O95789 1325 aa13.26□□□□□ -0.29
SMARCA1-201ENST00000371121 POLR2DO15514 142 aaKnown RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms