RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ARPP21Q9UBL0 812 aaPredicted RBP26.47■■□□□ 1.83
SHMT1-203ENST00000354098 MINDY4BA8MYZ0 360 aa26.47■■□□□ 1.83
SHMT1-203ENST00000354098 SBK1Q52WX2 424 aa26.47■■□□□ 1.83
SHMT1-203ENST00000354098 CASC1Q6TDU7 716 aa26.47■■□□□ 1.83
SHMT1-203ENST00000354098 METTL16Q86W50 562 aaKnown RBP26.47■■□□□ 1.83
SHMT1-203ENST00000354098 FOXP4Q8IVH2 680 aaPredicted RBP26.47■■□□□ 1.83
SHMT1-203ENST00000354098 XPO5Q9HAV4 1204 aaKnown RBP eCLIP26.47■■□□□ 1.83
SHMT1-203ENST00000354098 TBC1D12O60347 775 aa26.46■■□□□ 1.83
SHMT1-203ENST00000354098 FKBP1BP68106 108 aa26.46■■□□□ 1.83
SHMT1-203ENST00000354098 HTRA3P83110 453 aa26.46■■□□□ 1.83
SHMT1-203ENST00000354098 PTH1RQ03431 593 aa26.46■■□□□ 1.83
SHMT1-203ENST00000354098 ALX1Q15699 326 aa26.46■■□□□ 1.83
SHMT1-203ENST00000354098 ARMC9Q7Z3E5 817 aa26.46■■□□□ 1.83
SHMT1-203ENST00000354098 CRACR2BQ8N4Y2 399 aaPredicted RBP26.46■■□□□ 1.83
SHMT1-203ENST00000354098 KLRG1Q96E93 195 aa26.46■■□□□ 1.83
SHMT1-203ENST00000354098 DYNLL2Q96FJ2 89 aa26.46■■□□□ 1.83
SHMT1-203ENST00000354098 ZNF341Q9BYN7 854 aa26.46■■□□□ 1.83
SHMT1-203ENST00000354098 SERPINB13Q9UIV8 391 aa26.46■■□□□ 1.83
SHMT1-203ENST00000354098 PAPPA2Q9BXP8 1791 aa26.45■■□□□ 1.83
SHMT1-203ENST00000354098 MAP3K11Q16584 847 aa26.45■■□□□ 1.82
SHMT1-203ENST00000354098 SAPCD2Q86UD0 394 aa26.45■■□□□ 1.82
SHMT1-203ENST00000354098 AMOTL1Q8IY63 956 aa26.45■■□□□ 1.82
SHMT1-203ENST00000354098 DSCC1Q9BVC3 393 aa26.45■■□□□ 1.82
SHMT1-203ENST00000354098 EHD4Q9H223 541 aa26.45■■□□□ 1.82
SHMT1-203ENST00000354098 ABT1Q9ULW3 272 aaKnown RBP26.45■■□□□ 1.82
SHMT1-203ENST00000354098 PHF20L1A8MW92 1017 aa26.44■■□□□ 1.82
SHMT1-203ENST00000354098 GABPAQ06546 454 aa26.44■■□□□ 1.82
SHMT1-203ENST00000354098 STK11IPQ8N1F8 1099 aa26.44■■□□□ 1.82
SHMT1-203ENST00000354098 CREBZFQ9NS37 354 aa26.44■■□□□ 1.82
SHMT1-203ENST00000354098 HERC5Q9UII4 1024 aaKnown RBP26.44■■□□□ 1.82
SHMT1-203ENST00000354098 TLL2Q9Y6L7 1015 aa26.44■■□□□ 1.82
SHMT1-203ENST00000354098 IREB2P48200 963 aaKnown RBP26.44■■□□□ 1.82
SHMT1-203ENST00000354098 HUNKP57058 714 aa26.44■■□□□ 1.82
SHMT1-203ENST00000354098 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.44■■□□□ 1.82
SHMT1-203ENST00000354098 WRNIP1Q96S55 665 aa26.44■■□□□ 1.82
SHMT1-203ENST00000354098 ZNF112Q9UJU3 913 aa26.44■■□□□ 1.82
SHMT1-203ENST00000354098 HSPA6P17066 643 aa26.43■■□□□ 1.82
SHMT1-203ENST00000354098 INPP5BP32019 993 aa26.43■■□□□ 1.82
SHMT1-203ENST00000354098 RRP1BQ14684 758 aaKnown RBP26.43■■□□□ 1.82
SHMT1-203ENST00000354098 SLC44A5Q8NCS7 719 aa26.43■■□□□ 1.82
SHMT1-203ENST00000354098 ZKSCAN4Q969J2 545 aaPredicted RBP26.43■■□□□ 1.82
SHMT1-203ENST00000354098 TRIM34Q9BYJ4 488 aa26.43■■□□□ 1.82
SHMT1-203ENST00000354098 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.43■■□□□ 1.82
SHMT1-203ENST00000354098 LDLRAD1Q5T700 205 aa26.42■■□□□ 1.82
SHMT1-203ENST00000354098 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.42■■□□□ 1.82
SHMT1-203ENST00000354098 MAP3K9P80192 1104 aa26.41■■□□□ 1.82
SHMT1-203ENST00000354098 PPARAQ07869 468 aa26.41■■□□□ 1.82
SHMT1-203ENST00000354098 CLMNQ96JQ2 1002 aa26.41■■□□□ 1.82
SHMT1-203ENST00000354098 LSG1Q9H089 658 aaKnown RBP26.41■■□□□ 1.82
SHMT1-203ENST00000354098 KIAA1211Q6ZU35 1233 aa26.41■■□□□ 1.82
SHMT1-203ENST00000354098 ANO2Q9NQ90 1003 aa26.41■■□□□ 1.82
SHMT1-203ENST00000354098 ZMYM6O95789 1325 aa26.41■■□□□ 1.82
SHMT1-203ENST00000354098 SHMT1P34896 483 aa26.4■■□□□ 1.82
SHMT1-203ENST00000354098 CTDSPL2Q05D32 466 aa26.4■■□□□ 1.82
SHMT1-203ENST00000354098 CDK8P49336 464 aa26.39■■□□□ 1.82
SHMT1-203ENST00000354098 HAND2P61296 217 aa26.39■■□□□ 1.82
SHMT1-203ENST00000354098 VGLL4Q14135 290 aa26.39■■□□□ 1.82
SHMT1-203ENST00000354098 TATDN1Q6P1N9 297 aa26.39■■□□□ 1.82
SHMT1-203ENST00000354098 C16orf86Q6ZW13 317 aa26.39■■□□□ 1.82
SHMT1-203ENST00000354098 ANKRD13AQ8IZ07 590 aa26.39■■□□□ 1.82
SHMT1-203ENST00000354098 MAP4K1Q92918 833 aa26.39■■□□□ 1.82
SHMT1-203ENST00000354098 OTOFQ9HC10 1997 aa26.38■■□□□ 1.81
SHMT1-203ENST00000354098 SHROOM1Q2M3G4 852 aaPredicted RBP26.38■■□□□ 1.81
SHMT1-203ENST00000354098 INCENPQ9NQS7 918 aa26.38■■□□□ 1.81
SHMT1-203ENST00000354098 ROBO3Q96MS0 1386 aa26.38■■□□□ 1.81
SHMT1-203ENST00000354098 LAMB1P07942 1786 aa26.38■■□□□ 1.81
SHMT1-203ENST00000354098 JAG1P78504 1218 aa26.38■■□□□ 1.81
SHMT1-203ENST00000354098 NBPF3Q9H094 633 aa26.38■■□□□ 1.81
SHMT1-203ENST00000354098 TACC3Q9Y6A5 838 aa26.38■■□□□ 1.81
SHMT1-203ENST00000354098 FRMD4AQ9P2Q2 1039 aaPredicted RBP26.37■■□□□ 1.81
SHMT1-203ENST00000354098 SWAP70Q9UH65 585 aa26.37■■□□□ 1.81
SHMT1-203ENST00000354098 ANAPC4Q9UJX5 808 aa26.37■■□□□ 1.81
SHMT1-203ENST00000354098 SNCAIPQ9Y6H5 919 aa26.37■■□□□ 1.81
SHMT1-203ENST00000354098 CTNND1O60716 968 aaKnown RBP26.36■■□□□ 1.81
SHMT1-203ENST00000354098 GDF11O95390 407 aa26.36■■□□□ 1.81
SHMT1-203ENST00000354098 CAP2P40123 477 aa26.36■■□□□ 1.81
SHMT1-203ENST00000354098 ELP3Q9H9T3 547 aa26.36■■□□□ 1.81
SHMT1-203ENST00000354098 CTNNA3Q9UI47 895 aa26.36■■□□□ 1.81
SHMT1-203ENST00000354098 CSADQ9Y600 493 aa26.36■■□□□ 1.81
SHMT1-203ENST00000354098 ZNF213O14771 459 aa26.35■■□□□ 1.81
SHMT1-203ENST00000354098 PRDM1O75626 825 aa26.35■■□□□ 1.81
SHMT1-203ENST00000354098 CERKLQ49MI3 558 aaPredicted RBP26.35■■□□□ 1.81
SHMT1-203ENST00000354098 RGMBQ6NW40 437 aa26.35■■□□□ 1.81
SHMT1-203ENST00000354098 RBM8AQ9Y5S9 174 aaKnown RBP26.35■■□□□ 1.81
SHMT1-203ENST00000354098 U3KPZ7 1027 aaPredicted RBP26.35■■□□□ 1.81
SHMT1-203ENST00000354098 RASSF10A6NK89 507 aa26.34■■□□□ 1.81
SHMT1-203ENST00000354098 ZNF157P51786 506 aaPredicted RBP26.34■■□□□ 1.81
SHMT1-203ENST00000354098 DEFB115Q30KQ5 88 aa26.34■■□□□ 1.81
SHMT1-203ENST00000354098 SCYL3Q8IZE3 742 aa26.34■■□□□ 1.81
SHMT1-203ENST00000354098 CNKSR2Q8WXI2 1034 aa26.34■■□□□ 1.81
SHMT1-203ENST00000354098 SLC10A4Q96EP9 437 aa26.34■■□□□ 1.81
SHMT1-203ENST00000354098 UNCXA6NJT0 531 aa26.34■■□□□ 1.81
SHMT1-203ENST00000354098 NOL9Q5SY16 702 aaKnown RBP26.34■■□□□ 1.81
SHMT1-203ENST00000354098 TBC1D10CQ8IV04 446 aa26.34■■□□□ 1.81
SHMT1-203ENST00000354098 SLC3A2P08195 630 aaKnown RBP26.33■■□□□ 1.81
SHMT1-203ENST00000354098 IMMTQ16891 758 aaKnown RBP26.33■■□□□ 1.81
SHMT1-203ENST00000354098 CYP4F22Q6NT55 531 aa26.33■■□□□ 1.81
SHMT1-203ENST00000354098 HHIPL1Q96JK4 782 aa26.33■■□□□ 1.81
SHMT1-203ENST00000354098 MKNK2Q9HBH9 465 aa26.33■■□□□ 1.81
SHMT1-203ENST00000354098 RASA1P20936 1047 aa26.32■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms