RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 KIF1BO60333 1816 aa21.67■■□□□ 1.06
USP48-201ENST00000308271 ARID5AQ03989 594 aa21.67■■□□□ 1.06
USP48-201ENST00000308271 TTC38Q5R3I4 469 aa21.67■■□□□ 1.06
USP48-201ENST00000308271 ZCRB1Q8TBF4 217 aaKnown RBP21.67■■□□□ 1.06
USP48-201ENST00000308271 CTNNBL1Q8WYA6 563 aaPredicted RBP21.67■■□□□ 1.06
USP48-201ENST00000308271 PCDHA5Q9Y5H7 936 aa21.67■■□□□ 1.06
USP48-201ENST00000308271 LONRF3Q496Y0 759 aa21.67■■□□□ 1.06
USP48-201ENST00000308271 NOSTRINQ8IVI9 506 aa21.67■■□□□ 1.06
USP48-201ENST00000308271 LINC00301Q8NCQ3 95 aa21.67■■□□□ 1.06
USP48-201ENST00000308271 HAUS4Q9H6D7 363 aa21.67■■□□□ 1.06
USP48-201ENST00000308271 RRP15Q9Y3B9 282 aaKnown RBP21.67■■□□□ 1.06
USP48-201ENST00000308271 SHROOM2Q13796 1616 aa21.67■■□□□ 1.06
USP48-201ENST00000308271 A0A1B0GUA9 196 aa21.66■■□□□ 1.06
USP48-201ENST00000308271 STXBP4Q6ZWJ1 553 aa21.66■■□□□ 1.06
USP48-201ENST00000308271 MAPK8IP1Q9UQF2 711 aa21.66■■□□□ 1.06
USP48-201ENST00000308271 C6orf50Q9HD87 102 aa21.66■■□□□ 1.06
USP48-201ENST00000308271 COPRSQ9NQ92 184 aa21.66■■□□□ 1.06
USP48-201ENST00000308271 NAPAP54920 295 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 PAK2Q13177 524 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 ADCY10Q96PN6 1610 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 HNRNPH2P55795 449 aaKnown RBP21.65■■□□□ 1.06
USP48-201ENST00000308271 SPATA1Q5VX52 437 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 KRT79Q5XKE5 535 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 RSRC1Q96IZ7 334 aaKnown RBP21.65■■□□□ 1.06
USP48-201ENST00000308271 MYL10Q9BUA6 226 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 MAP3K4Q9Y6R4 1608 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 MIGA1Q8NAN2 632 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 NOX5Q96PH1 765 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 SAMD15Q9P1V8 674 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 CARMIL3Q8ND23 1372 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 CHRNA2Q15822 529 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 ZNF589Q86UQ0 364 aaPredicted RBP21.65■■□□□ 1.06
USP48-201ENST00000308271 LRRC45Q96CN5 670 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 KCNJ14Q9UNX9 436 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 TBX22Q9Y458 520 aa21.65■■□□□ 1.06
USP48-201ENST00000308271 PPP6R2O75170 966 aa21.64■■□□□ 1.06
USP48-201ENST00000308271 TBC1D5Q92609 795 aa21.64■■□□□ 1.06
USP48-201ENST00000308271 SELENOSQ9BQE4 189 aa21.64■■□□□ 1.06
USP48-201ENST00000308271 UNC13BO14795 1591 aa21.64■■□□□ 1.06
USP48-201ENST00000308271 TSPY3P0CV98 308 aa21.64■■□□□ 1.05
USP48-201ENST00000308271 TSPY8P0CW00 308 aa21.64■■□□□ 1.05
USP48-201ENST00000308271 HPDP32754 393 aaPredicted RBP21.64■■□□□ 1.05
USP48-201ENST00000308271 ARID5BQ14865 1188 aa21.64■■□□□ 1.05
USP48-201ENST00000308271 NELFBQ8WX92 580 aa21.64■■□□□ 1.05
USP48-201ENST00000308271 A0A087WWV3 80 aa21.64■■□□□ 1.05
USP48-201ENST00000308271 RUFY4Q6ZNE9 571 aa21.64■■□□□ 1.05
USP48-201ENST00000308271 V9GY48 417 aaPredicted RBP21.64■■□□□ 1.05
USP48-201ENST00000308271 MPHOSPH10O00566 681 aaKnown RBP21.63■■□□□ 1.05
USP48-201ENST00000308271 MAGEA1P43355 309 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 PDE4DQ08499 809 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 KMT5BQ4FZB7 885 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 NBPF6Q5VWK0 638 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 CCDC50Q8IVM0 306 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 ZNF594Q96JF6 807 aaPredicted RBP21.63■■□□□ 1.05
USP48-201ENST00000308271 NBPF4Q96M43 638 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 FTOQ9C0B1 505 aaKnown RBP eCLIP21.63■■□□□ 1.05
USP48-201ENST00000308271 MYO1AQ9UBC5 1043 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 TSKSQ9UJT2 592 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 IQSEC3Q9UPP2 1182 aaPredicted RBP21.63■■□□□ 1.05
USP48-201ENST00000308271 ZMYM6O95789 1325 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 CDC42BPAQ5VT25 1732 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 SLF2Q8IX21 1173 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 PARD6BQ9BYG5 372 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 UBE4AQ14139 1066 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 CCDC26Q8TAB7 109 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 DDX12PQ92771 950 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 IQCDQ96DY2 449 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 RABEP2Q9H5N1 569 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 ADD1P35611 737 aaKnown RBP21.63■■□□□ 1.05
USP48-201ENST00000308271 PLIN2Q99541 437 aa21.63■■□□□ 1.05
USP48-201ENST00000308271 KCNQ3O43525 872 aa21.62■■□□□ 1.05
USP48-201ENST00000308271 ERCC5P28715 1186 aaPredicted RBP21.62■■□□□ 1.05
USP48-201ENST00000308271 VSTM4Q8IW00 320 aa21.62■■□□□ 1.05
USP48-201ENST00000308271 ZSCAN29Q8IWY8 852 aaPredicted RBP21.62■■□□□ 1.05
USP48-201ENST00000308271 PRM3Q9NNZ6 103 aa21.62■■□□□ 1.05
USP48-201ENST00000308271 IRS4O14654 1257 aaPredicted RBP21.62■■□□□ 1.05
USP48-201ENST00000308271 TBCAO75347 108 aaKnown RBP21.62■■□□□ 1.05
USP48-201ENST00000308271 GNA11P29992 359 aa21.62■■□□□ 1.05
USP48-201ENST00000308271 ERMNQ8TAM6 284 aa21.62■■□□□ 1.05
USP48-201ENST00000308271 UBLCP1Q8WVY7 318 aaPredicted RBP21.62■■□□□ 1.05
USP48-201ENST00000308271 ZNF827Q17R98 1081 aa21.62■■□□□ 1.05
USP48-201ENST00000308271 CNNM4Q6P4Q7 775 aa21.62■■□□□ 1.05
USP48-201ENST00000308271 GDAP1L1Q96MZ0 367 aa21.62■■□□□ 1.05
USP48-201ENST00000308271 DBNLQ9UJU6 430 aaKnown RBP21.62■■□□□ 1.05
USP48-201ENST00000308271 TLDC2A0PJX2 215 aa21.62■■□□□ 1.05
USP48-201ENST00000308271 ZAP70P43403 619 aa21.62■■□□□ 1.05
USP48-201ENST00000308271 SPATS2Q86XZ4 545 aaKnown RBP21.62■■□□□ 1.05
USP48-201ENST00000308271 HELBQ8NG08 1087 aaPredicted RBP21.62■■□□□ 1.05
USP48-201ENST00000308271 CCDC77Q9BR77 488 aa21.62■■□□□ 1.05
USP48-201ENST00000308271 MADDQ8WXG6 1647 aa21.61■■□□□ 1.05
USP48-201ENST00000308271 CFAP221Q4G0U5 840 aa21.61■■□□□ 1.05
USP48-201ENST00000308271 PIK3AP1Q6ZUJ8 805 aa21.61■■□□□ 1.05
USP48-201ENST00000308271 OSBPL5Q9H0X9 879 aaPredicted RBP21.61■■□□□ 1.05
USP48-201ENST00000308271 IGSF1Q8N6C5 1336 aa21.61■■□□□ 1.05
USP48-201ENST00000308271 MAP2K2P36507 400 aa21.61■■□□□ 1.05
USP48-201ENST00000308271 CABS1Q96KC9 395 aa21.61■■□□□ 1.05
USP48-201ENST00000308271 CLIC6Q96NY7 704 aa21.61■■□□□ 1.05
USP48-201ENST00000308271 SLC52A2Q9HAB3 445 aa21.61■■□□□ 1.05
USP48-201ENST00000308271 ANKIB1Q9P2G1 1089 aa21.61■■□□□ 1.05
USP48-201ENST00000308271 MTRF1LQ9UGC7 380 aaKnown RBP21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms