RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 FERMT3Q86UX7 667 aa17.4■□□□□ 0.38
CCDC47-201ENST00000225726 GPT2Q8TD30 523 aa17.4■□□□□ 0.38
CCDC47-201ENST00000225726 TNKSO95271 1327 aa17.4■□□□□ 0.38
CCDC47-201ENST00000225726 TGFBRAP1Q8WUH2 860 aa17.4■□□□□ 0.38
CCDC47-201ENST00000225726 ZSCAN10Q96SZ4 725 aaPredicted RBP17.4■□□□□ 0.38
CCDC47-201ENST00000225726 ORC3Q9UBD5 711 aaPredicted RBP17.4■□□□□ 0.38
CCDC47-201ENST00000225726 KIF13BQ9NQT8 1826 aa17.39■□□□□ 0.38
CCDC47-201ENST00000225726 RANBP6O60518 1105 aaKnown RBP17.39■□□□□ 0.37
CCDC47-201ENST00000225726 TEX11Q8IYF3 940 aa17.39■□□□□ 0.37
CCDC47-201ENST00000225726 RGS22Q8NE09 1264 aa17.39■□□□□ 0.37
CCDC47-201ENST00000225726 GDPD2Q9HCC8 539 aa17.39■□□□□ 0.37
CCDC47-201ENST00000225726 NCLP19338 710 aaKnown RBP17.39■□□□□ 0.37
CCDC47-201ENST00000225726 IQCA1Q86XH1 822 aa17.39■□□□□ 0.37
CCDC47-201ENST00000225726 CERS5Q8N5B7 392 aa17.39■□□□□ 0.37
CCDC47-201ENST00000225726 ZNF219Q9P2Y4 722 aaPredicted RBP17.39■□□□□ 0.37
CCDC47-201ENST00000225726 CDC27P30260 824 aa17.38■□□□□ 0.37
CCDC47-201ENST00000225726 SUPT20HQ8NEM7 779 aa17.38■□□□□ 0.37
CCDC47-201ENST00000225726 DAGLAQ9Y4D2 1042 aa17.38■□□□□ 0.37
CCDC47-201ENST00000225726 MYH15Q9Y2K3 1946 aa17.38■□□□□ 0.37
CCDC47-201ENST00000225726 PRDM1O75626 825 aa17.38■□□□□ 0.37
CCDC47-201ENST00000225726 ADD1P35611 737 aaKnown RBP17.38■□□□□ 0.37
CCDC47-201ENST00000225726 RHBDL3P58872 404 aa17.38■□□□□ 0.37
CCDC47-201ENST00000225726 KRT85P78386 507 aa17.38■□□□□ 0.37
CCDC47-201ENST00000225726 EVX2Q03828 476 aa17.38■□□□□ 0.37
CCDC47-201ENST00000225726 GRIPAP1Q4V328 841 aa17.38■□□□□ 0.37
CCDC47-201ENST00000225726 ZNF646O15015 1829 aaPredicted RBP17.38■□□□□ 0.37
CCDC47-201ENST00000225726 RXRAP19793 462 aa17.38■□□□□ 0.37
CCDC47-201ENST00000225726 FKBP1AP62942 108 aaKnown RBP17.38■□□□□ 0.37
CCDC47-201ENST00000225726 MYL10Q9BUA6 226 aa17.38■□□□□ 0.37
CCDC47-201ENST00000225726 FAM217BQ9NTX9 383 aaPredicted RBP17.38■□□□□ 0.37
CCDC47-201ENST00000225726 DBNDD1Q9H9R9 158 aa17.37■□□□□ 0.37
CCDC47-201ENST00000225726 ECM29Q5VYK3 1845 aa17.37■□□□□ 0.37
CCDC47-201ENST00000225726 MAPKAPK5Q8IW41 473 aa17.37■□□□□ 0.37
CCDC47-201ENST00000225726 ZNF654Q8IZM8 581 aa17.37■□□□□ 0.37
CCDC47-201ENST00000225726 ENAHQ8N8S7 591 aaPredicted RBP17.37■□□□□ 0.37
CCDC47-201ENST00000225726 FIBPO43427 364 aa17.37■□□□□ 0.37
CCDC47-201ENST00000225726 PPFIA3O75145 1194 aa17.37■□□□□ 0.37
CCDC47-201ENST00000225726 TTF2Q9UNY4 1162 aaKnown RBP17.37■□□□□ 0.37
CCDC47-201ENST00000225726 STK36Q9NRP7 1315 aa17.36■□□□□ 0.37
CCDC47-201ENST00000225726 ECE2O60344 883 aa17.36■□□□□ 0.37
CCDC47-201ENST00000225726 FOSBP53539 338 aa17.36■□□□□ 0.37
CCDC47-201ENST00000225726 NTRK3Q16288 839 aa17.36■□□□□ 0.37
CCDC47-201ENST00000225726 CCDC144CPQ8IYA2 1237 aa17.36■□□□□ 0.37
CCDC47-201ENST00000225726 TTLL6Q8N841 843 aa17.36■□□□□ 0.37
CCDC47-201ENST00000225726 RTN1Q16799 776 aa17.36■□□□□ 0.37
CCDC47-201ENST00000225726 C8orf76Q96K31 380 aa17.36■□□□□ 0.37
CCDC47-201ENST00000225726 FLT1P17948 1338 aa17.36■□□□□ 0.37
CCDC47-201ENST00000225726 MYH1P12882 1939 aa17.36■□□□□ 0.37
CCDC47-201ENST00000225726 POLR3DP05423 398 aaPredicted RBP17.35■□□□□ 0.37
CCDC47-201ENST00000225726 GLIPR1L2Q4G1C9 344 aa17.35■□□□□ 0.37
CCDC47-201ENST00000225726 IFIT1BQ5T764 474 aaKnown RBP17.35■□□□□ 0.37
CCDC47-201ENST00000225726 STRIP1Q5VSL9 837 aa17.35■□□□□ 0.37
CCDC47-201ENST00000225726 CCDC196A0A1B0GTZ2 297 aa17.35■□□□□ 0.37
CCDC47-201ENST00000225726 GADD45BO75293 160 aaPredicted RBP17.35■□□□□ 0.37
CCDC47-201ENST00000225726 KIAA2012Q0VF49 1180 aa17.35■□□□□ 0.37
CCDC47-201ENST00000225726 PPP2R5BQ15173 497 aa17.35■□□□□ 0.37
CCDC47-201ENST00000225726 CAVIN1Q6NZI2 390 aaKnown RBP17.35■□□□□ 0.37
CCDC47-201ENST00000225726 F8W031 263 aaPredicted RBP17.35■□□□□ 0.37
CCDC47-201ENST00000225726 UBE2HP62256 183 aa17.35■□□□□ 0.37
CCDC47-201ENST00000225726 HHIPL2Q6UWX4 724 aa17.35■□□□□ 0.37
CCDC47-201ENST00000225726 MXD3Q9BW11 206 aa17.35■□□□□ 0.37
CCDC47-201ENST00000225726 IFNAR1P17181 557 aa17.34■□□□□ 0.37
CCDC47-201ENST00000225726 IARSP41252 1262 aaKnown RBP17.34■□□□□ 0.37
CCDC47-201ENST00000225726 SAP30BPQ9UHR5 308 aaKnown RBP17.34■□□□□ 0.37
CCDC47-201ENST00000225726 ELP1O95163 1332 aa17.34■□□□□ 0.37
CCDC47-201ENST00000225726 FAM173BQ6P4H8 233 aa17.34■□□□□ 0.37
CCDC47-201ENST00000225726 SCAND2PQ9GZW5 306 aaPredicted RBP17.34■□□□□ 0.37
CCDC47-201ENST00000225726 TSPY2A6NKD2 308 aa17.34■□□□□ 0.37
CCDC47-201ENST00000225726 C21orf2O43822 256 aa17.34■□□□□ 0.37
CCDC47-201ENST00000225726 FMNL1O95466 1100 aaPredicted RBP17.34■□□□□ 0.37
CCDC47-201ENST00000225726 SSRP1Q08945 709 aaKnown RBP17.34■□□□□ 0.37
CCDC47-201ENST00000225726 AOC3Q16853 763 aa17.34■□□□□ 0.37
CCDC47-201ENST00000225726 CCDC93Q567U6 631 aa17.34■□□□□ 0.37
CCDC47-201ENST00000225726 FAM47AQ5JRC9 791 aa17.34■□□□□ 0.37
CCDC47-201ENST00000225726 CATIPQ7Z7H3 387 aa17.34■□□□□ 0.37
CCDC47-201ENST00000225726 FANCBQ8NB91 859 aa17.34■□□□□ 0.37
CCDC47-201ENST00000225726 FBXO18Q8NFZ0 1043 aa17.34■□□□□ 0.37
CCDC47-201ENST00000225726 SCN9AQ15858 1988 aa17.34■□□□□ 0.37
CCDC47-201ENST00000225726 ADAMTSL1Q8N6G6 1762 aa17.33■□□□□ 0.37
CCDC47-201ENST00000225726 CALM1P0DP23 149 aa17.33■□□□□ 0.37
CCDC47-201ENST00000225726 CALM2P0DP24 149 aa17.33■□□□□ 0.37
CCDC47-201ENST00000225726 CALM3P0DP25 149 aa17.33■□□□□ 0.37
CCDC47-201ENST00000225726 SLC4A8Q2Y0W8 1093 aa17.33■□□□□ 0.37
CCDC47-201ENST00000225726 TEKT1Q969V4 418 aa17.33■□□□□ 0.37
CCDC47-201ENST00000225726 DYNLL2Q96FJ2 89 aa17.33■□□□□ 0.37
CCDC47-201ENST00000225726 ZNF287Q9HBT7 754 aa17.33■□□□□ 0.37
CCDC47-201ENST00000225726 DDAH1O94760 285 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 DPEP1P16444 411 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 GUCY1B3Q02153 619 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 CCDC178Q5BJE1 867 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 DACT2Q5SW24 774 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 RTKN2Q8IZC4 609 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 ALG1Q9BT22 464 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 MRIQ9BWK5 157 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 ISY1Q9ULR0 285 aaKnown RBP17.33■□□□□ 0.36
CCDC47-201ENST00000225726 USP17L3A6NCW0 530 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 USP17L4A6NCW7 530 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 KCNA3P22001 575 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 PLCD1P51178 756 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 ATL3Q6DD88 541 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms