RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 HIGD1BQ9P298 99 aa12.36□□□□□ -0.43
USP39-218ENST00000493829 LINC00308Q8TCZ7 52 aa12.35□□□□□ -0.43
USP39-218ENST00000493829 SPANXB1Q9NS25 103 aaPredicted RBP12.35□□□□□ -0.43
USP39-218ENST00000493829 DPH3Q96FX2 82 aa12.35□□□□□ -0.43
USP39-218ENST00000493829 FAM19A5Q7Z5A7 132 aaPredicted RBP12.33□□□□□ -0.44
USP39-218ENST00000493829 MUSTN1Q8IVN3 82 aa12.33□□□□□ -0.44
USP39-218ENST00000493829 SPACA4Q8TDM5 124 aa12.33□□□□□ -0.44
USP39-218ENST00000493829 FAM30AQ9NZY2 134 aa12.33□□□□□ -0.44
USP39-218ENST00000493829 HAMPP81172 84 aa12.32□□□□□ -0.44
USP39-218ENST00000493829 Q8NDZ9 215 aa12.32□□□□□ -0.44
USP39-218ENST00000493829 SERTAD4-AS1Q5TG53 156 aa12.32□□□□□ -0.44
USP39-218ENST00000493829 LINC00474Q9P2X8 69 aa12.31□□□□□ -0.44
USP39-218ENST00000493829 Q6ZVH6 145 aa12.3□□□□□ -0.44
USP39-218ENST00000493829 A0A1W2PNN7 141 aa12.29□□□□□ -0.44
USP39-218ENST00000493829 NCR3O14931 201 aa12.29□□□□□ -0.44
USP39-218ENST00000493829 IFITM1P13164 125 aa12.29□□□□□ -0.44
USP39-218ENST00000493829 CTAG1AP78358 180 aa12.29□□□□□ -0.44
USP39-218ENST00000493829 PRR3P79522 188 aaKnown RBP12.29□□□□□ -0.44
USP39-218ENST00000493829 DDTP30046 118 aa12.28□□□□□ -0.44
USP39-218ENST00000493829 HSD52Q0P140 79 aa12.28□□□□□ -0.44
USP39-218ENST00000493829 A0A087WYN8 130 aa12.27□□□□□ -0.45
USP39-218ENST00000493829 PCP4L1A6NKN8 68 aa12.27□□□□□ -0.45
USP39-218ENST00000493829 KRTAP7-1Q8IUC3 87 aa12.27□□□□□ -0.45
USP39-218ENST00000493829 COPS9Q8WXC6 57 aa12.26□□□□□ -0.45
USP39-218ENST00000493829 VPREB1P12018 145 aa12.26□□□□□ -0.45
USP39-218ENST00000493829 Q6ZSA8 131 aa12.26□□□□□ -0.45
USP39-218ENST00000493829 CEND1Q8N111 149 aa12.26□□□□□ -0.45
USP39-218ENST00000493829 LOC107984156A0A0G2JMH3 177 aa12.25□□□□□ -0.45
USP39-218ENST00000493829 TAL2Q16559 108 aa12.25□□□□□ -0.45
USP39-218ENST00000493829 ARL17AQ8IVW1 177 aa12.25□□□□□ -0.45
USP39-218ENST00000493829 A4D1N5 150 aa12.24□□□□□ -0.45
USP39-218ENST00000493829 RPL24P83731 157 aaKnown RBP12.24□□□□□ -0.45
USP39-218ENST00000493829 SCXQ7RTU7 201 aa12.24□□□□□ -0.45
USP39-218ENST00000493829 NKAPP1Q8N9T2 125 aa12.24□□□□□ -0.45
USP39-218ENST00000493829 DYNC1H1Q14204 4646 aaKnown RBP12.24□□□□□ -0.45
USP39-218ENST00000493829 GAGE10A6NGK3 116 aa12.23□□□□□ -0.45
USP39-218ENST00000493829 M0QXV9 152 aa12.23□□□□□ -0.45
USP39-218ENST00000493829 FXYD2P54710 66 aa12.23□□□□□ -0.45
USP39-218ENST00000493829 HINT1P49773 126 aaPredicted RBP12.22□□□□□ -0.45
USP39-218ENST00000493829 CIRBP-AS1Q8TBR5 109 aa12.22□□□□□ -0.45
USP39-218ENST00000493829 PLA2G2DQ9UNK4 145 aa12.22□□□□□ -0.45
USP39-218ENST00000493829 C22orf24Q9Y442 160 aa12.22□□□□□ -0.45
USP39-218ENST00000493829 LRP1BQ9NZR2 4599 aa12.21□□□□□ -0.45
USP39-218ENST00000493829 PHF5AQ7RTV0 110 aaKnown RBP12.21□□□□□ -0.45
USP39-218ENST00000493829 PLAC8Q9NZF1 115 aa12.2□□□□□ -0.46
USP39-218ENST00000493829 EPPK1P58107 5090 aaKnown RBP12.2□□□□□ -0.46
USP39-218ENST00000493829 IGKV2-28A0A075B6P5 120 aa12.19□□□□□ -0.46
USP39-218ENST00000493829 NDUFC2O95298 119 aa12.19□□□□□ -0.46
USP39-218ENST00000493829 IGKV2D-28P01615 120 aa12.19□□□□□ -0.46
USP39-218ENST00000493829 C7orf33Q8WU49 177 aa12.19□□□□□ -0.46
USP39-218ENST00000493829 PPDPFQ9H3Y8 114 aa12.19□□□□□ -0.46
USP39-218ENST00000493829 DNAH8Q96JB1 4490 aa12.19□□□□□ -0.46
USP39-218ENST00000493829 IGLV5-37A0A075B6J1 123 aa12.18□□□□□ -0.46
USP39-218ENST00000493829 MRPL55Q7Z7F7 128 aaKnown RBP12.18□□□□□ -0.46
USP39-218ENST00000493829 BATFQ16520 125 aa12.17□□□□□ -0.46
USP39-218ENST00000493829 BVES-AS1Q5T3Y7 98 aa12.17□□□□□ -0.46
USP39-218ENST00000493829 RPL37AP8A6NKH3 93 aa12.16□□□□□ -0.46
USP39-218ENST00000493829 LINC00337Q8N6G1 96 aa12.16□□□□□ -0.46
USP39-218ENST00000493829 OR13C6PQ8NH95 151 aa12.16□□□□□ -0.46
USP39-218ENST00000493829 TMEM238LA0A1B0GVL6 79 aa12.16□□□□□ -0.46
USP39-218ENST00000493829 A6NJY4 79 aa12.16□□□□□ -0.46
USP39-218ENST00000493829 M0R378 163 aa12.16□□□□□ -0.46
USP39-218ENST00000493829 NHP2Q9NX24 153 aaKnown RBP12.16□□□□□ -0.46
USP39-218ENST00000493829 K7ERJ3 54 aa12.15□□□□□ -0.46
USP39-218ENST00000493829 M0R143 59 aa12.15□□□□□ -0.46
USP39-218ENST00000493829 S100A7L2Q5SY68 101 aa12.15□□□□□ -0.46
USP39-218ENST00000493829 LINC00167Q96N53 147 aa12.15□□□□□ -0.46
USP39-218ENST00000493829 A6NDN8 102 aa12.14□□□□□ -0.47
USP39-218ENST00000493829 XGP55808 180 aa12.14□□□□□ -0.47
USP39-218ENST00000493829 UBE2BP63146 152 aa12.14□□□□□ -0.47
USP39-218ENST00000493829 TRBV10-3A0A0K0K1G6 114 aa12.13□□□□□ -0.47
USP39-218ENST00000493829 CFC1BP0CG36 223 aa12.13□□□□□ -0.47
USP39-218ENST00000493829 CFC1P0CG37 223 aa12.13□□□□□ -0.47
USP39-218ENST00000493829 TRBV10-2A0A0K0K1G8 114 aa12.13□□□□□ -0.47
USP39-218ENST00000493829 RAB37Q96AX2 223 aa12.13□□□□□ -0.47
USP39-218ENST00000493829 EPM2AB3EWF7 344 aa12.12□□□□□ -0.47
USP39-218ENST00000493829 LBHQ53QV2 105 aaPredicted RBP12.12□□□□□ -0.47
USP39-218ENST00000493829 KRTAP11-1Q8IUC1 163 aa12.12□□□□□ -0.47
USP39-218ENST00000493829 RPL13AP40429 203 aaKnown RBP12.1□□□□□ -0.47
USP39-218ENST00000493829 APOBP04114 4563 aaKnown RBP12.1□□□□□ -0.47
USP39-218ENST00000493829 H7C2G1 150 aa12.1□□□□□ -0.47
USP39-218ENST00000493829 TRAV13-2A0A0B4J235 113 aa12.09□□□□□ -0.47
USP39-218ENST00000493829 A0A0B4J2C4 111 aa12.09□□□□□ -0.47
USP39-218ENST00000493829 IGLV6-57P01721 117 aa12.08□□□□□ -0.48
USP39-218ENST00000493829 IGLV1-50A0A075B6I6 118 aa12.07□□□□□ -0.48
USP39-218ENST00000493829 SMR3BP02814 79 aaPredicted RBP12.07□□□□□ -0.48
USP39-218ENST00000493829 TMEM126AQ9H061 195 aa12.06□□□□□ -0.48
USP39-218ENST00000493829 TRAV23DV6A0A075B6W5 121 aa12.05□□□□□ -0.48
USP39-218ENST00000493829 SNHG12Q9BXW3 62 aa12.05□□□□□ -0.48
USP39-218ENST00000493829 PRO1854Q9UHT4 67 aa12.05□□□□□ -0.48
USP39-218ENST00000493829 Q1RN00 199 aa12.04□□□□□ -0.48
USP39-218ENST00000493829 A0A1B0GWB2 263 aa12.03□□□□□ -0.48
USP39-218ENST00000493829 CDK2AP2O75956 126 aa12.03□□□□□ -0.48
USP39-218ENST00000493829 LINC00528Q8N1L1 170 aa12.02□□□□□ -0.49
USP39-218ENST00000493829 PSORS1C2Q9UIG4 136 aa12.02□□□□□ -0.49
USP39-218ENST00000493829 PRYO14603 147 aa12.01□□□□□ -0.49
USP39-218ENST00000493829 REG3GQ6UW15 175 aa12.01□□□□□ -0.49
USP39-218ENST00000493829 SMIM11BQ8TCY0 68 aa12.01□□□□□ -0.49
USP39-218ENST00000493829 KCNQ1DNQ9H478 68 aa12.01□□□□□ -0.49
USP39-218ENST00000493829 ZNF73O43830 326 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms