RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 A0A1W2PPR1 153 aa7.15□□□□□ -1.26
CCDC88A-202ENST00000336838 CENPEQ02224 2701 aa7.15□□□□□ -1.26
CCDC88A-202ENST00000336838 NANOS2P60321 138 aaKnown RBP7.15□□□□□ -1.26
CCDC88A-202ENST00000336838 IGLV6-57P01721 117 aa7.14□□□□□ -1.27
CCDC88A-202ENST00000336838 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.13□□□□□ -1.27
CCDC88A-202ENST00000336838 Q6ZRX8 168 aa7.13□□□□□ -1.27
CCDC88A-202ENST00000336838 Q8NBF4 154 aa7.13□□□□□ -1.27
CCDC88A-202ENST00000336838 NHLRC4P0CG21 123 aaPredicted RBP7.13□□□□□ -1.27
CCDC88A-202ENST00000336838 A0A096LNI7 61 aa7.12□□□□□ -1.27
CCDC88A-202ENST00000336838 TRBV7-4A0A0J9YYF1 115 aa7.12□□□□□ -1.27
CCDC88A-202ENST00000336838 LINC01600Q96MT4 127 aa7.12□□□□□ -1.27
CCDC88A-202ENST00000336838 IGLV9-49A0A0B4J1Y8 123 aa7.12□□□□□ -1.27
CCDC88A-202ENST00000336838 PLA2G2AP14555 144 aa7.12□□□□□ -1.27
CCDC88A-202ENST00000336838 A0A087WSZ3 146 aa7.11□□□□□ -1.27
CCDC88A-202ENST00000336838 KLKP1Q107X0 134 aa7.11□□□□□ -1.27
CCDC88A-202ENST00000336838 FAM218AQ96MZ4 157 aa7.11□□□□□ -1.27
CCDC88A-202ENST00000336838 C1orf64Q8NEQ6 169 aa7.11□□□□□ -1.27
CCDC88A-202ENST00000336838 SOSTDC1Q6X4U4 206 aa7.1□□□□□ -1.27
CCDC88A-202ENST00000336838 Q6ZTC4 211 aa7.1□□□□□ -1.27
CCDC88A-202ENST00000336838 Q6ZRU5 148 aa7.09□□□□□ -1.27
CCDC88A-202ENST00000336838 TRANK1O15050 2925 aa7.09□□□□□ -1.27
CCDC88A-202ENST00000336838 C6orf48Q9UBA6 75 aa7.09□□□□□ -1.27
CCDC88A-202ENST00000336838 MOBPQ13875 183 aa7.09□□□□□ -1.27
CCDC88A-202ENST00000336838 SRCAPQ6ZRS2 3230 aa7.09□□□□□ -1.27
CCDC88A-202ENST00000336838 SPINK6Q6UWN8 80 aa7.08□□□□□ -1.28
CCDC88A-202ENST00000336838 IGHV6-1A0A0B4J1U7 121 aa7.08□□□□□ -1.28
CCDC88A-202ENST00000336838 PRR4Q16378 134 aa7.08□□□□□ -1.28
CCDC88A-202ENST00000336838 ACYP2P14621 99 aa7.07□□□□□ -1.28
CCDC88A-202ENST00000336838 CYP4F30PQ9H0H9 118 aa7.07□□□□□ -1.28
CCDC88A-202ENST00000336838 PSPHP1O15172 72 aa7.07□□□□□ -1.28
CCDC88A-202ENST00000336838 TRAV22A0A0B4J277 110 aa7.07□□□□□ -1.28
CCDC88A-202ENST00000336838 KIAA0087Q14695 138 aa7.06□□□□□ -1.28
CCDC88A-202ENST00000336838 SMIM29Q86T20 159 aa7.06□□□□□ -1.28
CCDC88A-202ENST00000336838 C22orf24Q9Y442 160 aa7.06□□□□□ -1.28
CCDC88A-202ENST00000336838 FSHBP01225 129 aa7.06□□□□□ -1.28
CCDC88A-202ENST00000336838 CR1P17927 2039 aa7.05□□□□□ -1.28
CCDC88A-202ENST00000336838 ITPR3Q14573 2671 aa7.05□□□□□ -1.28
CCDC88A-202ENST00000336838 VPREB1P12018 145 aa7.04□□□□□ -1.28
CCDC88A-202ENST00000336838 IGLV5-52A0A0A0MRZ9 124 aa7.04□□□□□ -1.28
CCDC88A-202ENST00000336838 C16orf90A8MZG2 172 aa7.04□□□□□ -1.28
CCDC88A-202ENST00000336838 RPL37AP61513 92 aaKnown RBP7.04□□□□□ -1.28
CCDC88A-202ENST00000336838 LINC00167Q96N53 147 aa7.03□□□□□ -1.28
CCDC88A-202ENST00000336838 ATRQ13535 2644 aa7.02□□□□□ -1.29
CCDC88A-202ENST00000336838 DNAH10OSP0CZ25 163 aa7.02□□□□□ -1.29
CCDC88A-202ENST00000336838 X6R8D5 127 aa7.02□□□□□ -1.29
CCDC88A-202ENST00000336838 LOC101927531A0A1B0GV80 90 aa7.02□□□□□ -1.29
CCDC88A-202ENST00000336838 KCNQ1DNQ9H478 68 aa7.02□□□□□ -1.29
CCDC88A-202ENST00000336838 AKAP13Q12802 2813 aa7.01□□□□□ -1.29
CCDC88A-202ENST00000336838 CIRBP-AS1Q8TBR5 109 aa7.01□□□□□ -1.29
CCDC88A-202ENST00000336838 LRCOL1A6NCL2 159 aa7.01□□□□□ -1.29
CCDC88A-202ENST00000336838 SMCR5Q8TEV8 140 aa7.01□□□□□ -1.29
CCDC88A-202ENST00000336838 OXLD1Q5BKU9 147 aa7□□□□□ -1.29
CCDC88A-202ENST00000336838 GOLGB1Q14789 3259 aaKnown RBP7□□□□□ -1.29
CCDC88A-202ENST00000336838 CFAP46Q8IYW2 2715 aa7□□□□□ -1.29
CCDC88A-202ENST00000336838 A8MWP4 228 aa6.99□□□□□ -1.29
CCDC88A-202ENST00000336838 Q6ZRP5 223 aa6.99□□□□□ -1.29
CCDC88A-202ENST00000336838 MAST4O15021 2626 aa6.99□□□□□ -1.29
CCDC88A-202ENST00000336838 Q8NAQ8 132 aa6.99□□□□□ -1.29
CCDC88A-202ENST00000336838 PLA2G2DQ9UNK4 145 aa6.99□□□□□ -1.29
CCDC88A-202ENST00000336838 PRLHP81277 87 aa6.99□□□□□ -1.29
CCDC88A-202ENST00000336838 ZNF292O60281 2723 aa6.99□□□□□ -1.29
CCDC88A-202ENST00000336838 CSNK1G2-AS1Q8NCQ2 148 aa6.98□□□□□ -1.29
CCDC88A-202ENST00000336838 KMT2BQ9UMN6 2715 aaPredicted RBP6.98□□□□□ -1.29
CCDC88A-202ENST00000336838 LINC00476Q8WZB0 136 aa6.98□□□□□ -1.29
CCDC88A-202ENST00000336838 TM2D3Q9BRN9 247 aa6.98□□□□□ -1.29
CCDC88A-202ENST00000336838 PRR34Q9NV39 138 aa6.98□□□□□ -1.29
CCDC88A-202ENST00000336838 OBSCN-AS1Q96MR7 158 aa6.98□□□□□ -1.29
CCDC88A-202ENST00000336838 C4orf26Q17RF5 130 aa6.97□□□□□ -1.29
CCDC88A-202ENST00000336838 HELZ2Q9BYK8 2649 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-202ENST00000336838 A0A1B0GU69 56 aa6.97□□□□□ -1.29
CCDC88A-202ENST00000336838 LINC00612Q8N6U2 182 aa6.97□□□□□ -1.29
CCDC88A-202ENST00000336838 KRTAP10-9P60411 292 aa6.96□□□□□ -1.29
CCDC88A-202ENST00000336838 LINC00528Q8N1L1 170 aa6.96□□□□□ -1.29
CCDC88A-202ENST00000336838 C8orf87E5RJ46 101 aa6.96□□□□□ -1.3
CCDC88A-202ENST00000336838 C1orf134Q5TEV5 83 aa6.95□□□□□ -1.3
CCDC88A-202ENST00000336838 SPANXA2-OT1Q8N9U9 137 aa6.95□□□□□ -1.3
CCDC88A-202ENST00000336838 TLX1NBP0CAT3 122 aa6.95□□□□□ -1.3
CCDC88A-202ENST00000336838 PCOTHQ58A44 107 aa6.95□□□□□ -1.3
CCDC88A-202ENST00000336838 RETNQ9HD89 108 aa6.95□□□□□ -1.3
CCDC88A-202ENST00000336838 GCN1Q92616 2671 aaKnown RBP6.94□□□□□ -1.3
CCDC88A-202ENST00000336838 FAM229AH3BQW9 127 aa6.94□□□□□ -1.3
CCDC88A-202ENST00000336838 FLNBO75369 2602 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-202ENST00000336838 SPAG11AQ6PDA7 123 aa6.92□□□□□ -1.3
CCDC88A-202ENST00000336838 H7BZZ5 65 aa6.91□□□□□ -1.3
CCDC88A-202ENST00000336838 EPM2AB3EWF7 344 aa6.91□□□□□ -1.3
CCDC88A-202ENST00000336838 LY6G6CO95867 125 aa6.9□□□□□ -1.3
CCDC88A-202ENST00000336838 Q9UF83 564 aa6.9□□□□□ -1.3
CCDC88A-202ENST00000336838 C7orf65Q6ZTY9 151 aa6.9□□□□□ -1.31
CCDC88A-202ENST00000336838 MGAM2Q2M2H8 2515 aa6.9□□□□□ -1.31
CCDC88A-202ENST00000336838 ATP11AUNQ6ZP68 121 aa6.9□□□□□ -1.31
CCDC88A-202ENST00000336838 M0R2N4 97 aa6.89□□□□□ -1.31
CCDC88A-202ENST00000336838 IGLV1-50A0A075B6I6 118 aa6.89□□□□□ -1.31
CCDC88A-202ENST00000336838 PRR15Q8IV56 129 aa6.88□□□□□ -1.31
CCDC88A-202ENST00000336838 LINC00313P59037 77 aa6.87□□□□□ -1.31
CCDC88A-202ENST00000336838 WIPF1O43516 503 aa6.87□□□□□ -1.31
CCDC88A-202ENST00000336838 DEFB116Q30KQ4 102 aa6.87□□□□□ -1.31
CCDC88A-202ENST00000336838 CHD6Q8TD26 2715 aa6.86□□□□□ -1.31
CCDC88A-202ENST00000336838 SMR3AQ99954 134 aa6.86□□□□□ -1.31
CCDC88A-202ENST00000336838 K7EQZ3 153 aa6.85□□□□□ -1.31
CCDC88A-202ENST00000336838 RETNLBQ9BQ08 111 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms