RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 Q8N814 137 aa7.21□□□□□ -1.26
USP28-201ENST00000003302 FAM110AQ9BQ89 295 aa7.21□□□□□ -1.26
USP28-201ENST00000003302 DNAH1Q9P2D7 4330 aa7.2□□□□□ -1.26
USP28-201ENST00000003302 A0A1B0GUV1 79 aa7.2□□□□□ -1.26
USP28-201ENST00000003302 C9orf153Q5TBE3 101 aa7.19□□□□□ -1.26
USP28-201ENST00000003302 CFAP161Q6P656 301 aa7.19□□□□□ -1.26
USP28-201ENST00000003302 CYSRT1A8MQ03 144 aa7.19□□□□□ -1.26
USP28-201ENST00000003302 HIST1H4AP62805 103 aaKnown RBP7.19□□□□□ -1.26
USP28-201ENST00000003302 Q8NAQ8 132 aa7.19□□□□□ -1.26
USP28-201ENST00000003302 ENHOQ6UWT2 76 aa7.19□□□□□ -1.26
USP28-201ENST00000003302 HIGD2BQ4VC39 106 aa7.18□□□□□ -1.26
USP28-201ENST00000003302 OXTP01178 125 aa7.18□□□□□ -1.26
USP28-201ENST00000003302 ACYP1P07311 99 aa7.18□□□□□ -1.26
USP28-201ENST00000003302 CD164L2Q6UWJ8 174 aa7.18□□□□□ -1.26
USP28-201ENST00000003302 INAFM2P0DMQ5 153 aa7.17□□□□□ -1.26
USP28-201ENST00000003302 C3orf22Q8N5N4 141 aa7.17□□□□□ -1.26
USP28-201ENST00000003302 TRAV23DV6A0A075B6W5 121 aa7.17□□□□□ -1.26
USP28-201ENST00000003302 A0A1B0GX51 115 aa7.17□□□□□ -1.26
USP28-201ENST00000003302 TMEM126AQ9H061 195 aa7.17□□□□□ -1.26
USP28-201ENST00000003302 ORMDL1Q9P0S3 153 aa7.17□□□□□ -1.26
USP28-201ENST00000003302 WFDC10BQ8IUB3 73 aa7.16□□□□□ -1.26
USP28-201ENST00000003302 COPS9Q8WXC6 57 aa7.16□□□□□ -1.26
USP28-201ENST00000003302 DNAH3Q8TD57 4116 aa7.16□□□□□ -1.26
USP28-201ENST00000003302 H0YGX0 51 aa7.16□□□□□ -1.26
USP28-201ENST00000003302 HUWE1Q7Z6Z7 4374 aaKnown RBP7.15□□□□□ -1.26
USP28-201ENST00000003302 C6orf48Q9UBA6 75 aa7.15□□□□□ -1.26
USP28-201ENST00000003302 DAD1P61803 113 aa7.15□□□□□ -1.26
USP28-201ENST00000003302 SPAG11BQ08648 103 aa7.15□□□□□ -1.26
USP28-201ENST00000003302 OXLD1Q5BKU9 147 aa7.15□□□□□ -1.27
USP28-201ENST00000003302 SCXQ7RTU7 201 aa7.15□□□□□ -1.27
USP28-201ENST00000003302 IMUPQ9GZP8 106 aa7.15□□□□□ -1.27
USP28-201ENST00000003302 TRBV10-3A0A0K0K1G6 114 aa7.14□□□□□ -1.27
USP28-201ENST00000003302 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.14□□□□□ -1.27
USP28-201ENST00000003302 Q6ZQY7 126 aa7.14□□□□□ -1.27
USP28-201ENST00000003302 USP17L23D6RBM5 183 aa7.14□□□□□ -1.27
USP28-201ENST00000003302 DSCR8Q96T75 97 aa7.13□□□□□ -1.27
USP28-201ENST00000003302 CCKP06307 115 aa7.13□□□□□ -1.27
USP28-201ENST00000003302 IGHV4-30-4P0DP06 118 aa7.13□□□□□ -1.27
USP28-201ENST00000003302 COX7CP15954 63 aa7.13□□□□□ -1.27
USP28-201ENST00000003302 UPK3BQ9BT76 320 aa7.13□□□□□ -1.27
USP28-201ENST00000003302 LINC00167Q96N53 147 aa7.13□□□□□ -1.27
USP28-201ENST00000003302 LINC00575Q6W349 94 aa7.12□□□□□ -1.27
USP28-201ENST00000003302 UQCRQO14949 82 aa7.12□□□□□ -1.27
USP28-201ENST00000003302 S100A7L2Q5SY68 101 aa7.12□□□□□ -1.27
USP28-201ENST00000003302 SVIPQ8NHG7 77 aa7.1□□□□□ -1.27
USP28-201ENST00000003302 Q8N9L7 120 aa7.1□□□□□ -1.27
USP28-201ENST00000003302 FRAS1Q86XX4 4008 aa7.1□□□□□ -1.27
USP28-201ENST00000003302 Q6JHZ5 121 aa7.1□□□□□ -1.27
USP28-201ENST00000003302 LYPD5Q6UWN5 251 aa7.09□□□□□ -1.27
USP28-201ENST00000003302 Q6ZTC4 211 aa7.09□□□□□ -1.27
USP28-201ENST00000003302 TRAV10A0A0B4J240 114 aa7.09□□□□□ -1.27
USP28-201ENST00000003302 CMC4P56277 68 aaPredicted RBP7.09□□□□□ -1.27
USP28-201ENST00000003302 Q6ZQT0 140 aa7.09□□□□□ -1.27
USP28-201ENST00000003302 PRB2P02812 416 aaPredicted RBP7.09□□□□□ -1.28
USP28-201ENST00000003302 PRR34Q9NV39 138 aa7.09□□□□□ -1.28
USP28-201ENST00000003302 IGLV6-57P01721 117 aa7.08□□□□□ -1.28
USP28-201ENST00000003302 KRTAP10-11P60412 298 aa7.08□□□□□ -1.28
USP28-201ENST00000003302 Q6ZRU5 148 aa7.08□□□□□ -1.28
USP28-201ENST00000003302 LYRM9A8MSI8 78 aa7.08□□□□□ -1.28
USP28-201ENST00000003302 LAMTOR3Q9UHA4 124 aa7.08□□□□□ -1.28
USP28-201ENST00000003302 NDUFC2O95298 119 aa7.07□□□□□ -1.28
USP28-201ENST00000003302 CASC10Q5T4H9 136 aa7.07□□□□□ -1.28
USP28-201ENST00000003302 KRTAP26-1Q6PEX3 210 aa7.07□□□□□ -1.28
USP28-201ENST00000003302 CRYGAP11844 174 aa7.06□□□□□ -1.28
USP28-201ENST00000003302 TMEM256-PLSCR3K7ERE1 68 aa7.06□□□□□ -1.28
USP28-201ENST00000003302 GHRHP01286 108 aa7.06□□□□□ -1.28
USP28-201ENST00000003302 C15orf56Q8N910 161 aa7.06□□□□□ -1.28
USP28-201ENST00000003302 Q6ZRP5 223 aa7.06□□□□□ -1.28
USP28-201ENST00000003302 A0A0J9YWU9 116 aa7.05□□□□□ -1.28
USP28-201ENST00000003302 HAMPP81172 84 aa7.05□□□□□ -1.28
USP28-201ENST00000003302 LELP1Q5T871 98 aa7.05□□□□□ -1.28
USP28-201ENST00000003302 SMIM9A6NGZ8 99 aa7.05□□□□□ -1.28
USP28-201ENST00000003302 J3QKU1 62 aa7.04□□□□□ -1.28
USP28-201ENST00000003302 COX17Q14061 63 aa7.04□□□□□ -1.28
USP28-201ENST00000003302 ESRGQ1W209 222 aa7.04□□□□□ -1.28
USP28-201ENST00000003302 FAM19A5Q7Z5A7 132 aaPredicted RBP7.04□□□□□ -1.28
USP28-201ENST00000003302 A0A0G2JQZ4 141 aa7.04□□□□□ -1.28
USP28-201ENST00000003302 A0A1W2PNN7 141 aa7.04□□□□□ -1.28
USP28-201ENST00000003302 FAM168BA1KXE4 195 aa7.04□□□□□ -1.28
USP28-201ENST00000003302 ATOX1O00244 68 aa7.04□□□□□ -1.28
USP28-201ENST00000003302 PLECQ15149 4684 aaKnown RBP7.04□□□□□ -1.28
USP28-201ENST00000003302 C9orf66Q5T8R8 295 aa7.04□□□□□ -1.28
USP28-201ENST00000003302 Q6ZVQ6 151 aa7.04□□□□□ -1.28
USP28-201ENST00000003302 C20orf197Q8N268 126 aa7.04□□□□□ -1.28
USP28-201ENST00000003302 LINC01547P58512 204 aaPredicted RBP7.04□□□□□ -1.28
USP28-201ENST00000003302 RBM3P98179 157 aaKnown RBP7.04□□□□□ -1.28
USP28-201ENST00000003302 KPRPQ5T749 579 aaPredicted RBP7.04□□□□□ -1.28
USP28-201ENST00000003302 SERP2Q8N6R1 65 aa7.04□□□□□ -1.28
USP28-201ENST00000003302 SPART-AS1P0CW21 52 aa7.03□□□□□ -1.28
USP28-201ENST00000003302 VPREB1P12018 145 aa7.03□□□□□ -1.28
USP28-201ENST00000003302 SNURFQ9Y675 71 aa7.03□□□□□ -1.28
USP28-201ENST00000003302 SERTAD4-AS1Q5TG53 156 aa7.03□□□□□ -1.28
USP28-201ENST00000003302 ZNF73O43830 326 aaPredicted RBP7.02□□□□□ -1.29
USP28-201ENST00000003302 JMJD7-PLA2G4BH0Y9G9 81 aa7.01□□□□□ -1.29
USP28-201ENST00000003302 MUC7Q8TAX7 377 aa7.01□□□□□ -1.29
USP28-201ENST00000003302 CAMK2N2Q96S95 79 aa7.01□□□□□ -1.29
USP28-201ENST00000003302 DPH3Q96FX2 82 aa7.01□□□□□ -1.29
USP28-201ENST00000003302 MIFP14174 115 aa7□□□□□ -1.29
USP28-201ENST00000003302 TM2D3Q9BRN9 247 aa7□□□□□ -1.29
USP28-201ENST00000003302 APOC4P55056 127 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms