RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	TRBV7-6	A0A0J9YX20	115 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	LOC107986453	A0A1B0GWG9	222 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488		A0A1W2PRE2	83 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	BBIP1	A8MTZ0	92 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	PGRMC1	O00264	195 aa	Known RBP	0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	SPART-AS1	P0CW21	52 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	APELA	P0DMC3	54 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	CCL3L1	P16619	93 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	RPS3	P23396	243 aa	Known RBP eCLIP	0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	S100A11	P31949	105 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	GNG10	P50151	68 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	LSM3	P62310	102 aa	Known RBP	0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	QRFP	P83859	136 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	SPINK13	Q1W4C9	94 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	DEFB114	Q30KQ6	69 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	XAF1	Q6GPH4	301 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	C3orf62	Q6ZUJ4	267 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	LINC00305	Q7Z4B0	112 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	WFDC10B	Q8IUB3	73 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	TCTEX1D1	Q8N7M0	179 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	TMEM229B	Q8NBD8	167 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	CLEC2B	Q92478	149 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	MRPL35	Q9NZE8	188 aa	Known RBP	0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	MPC1	Q9Y5U8	109 aa		0.24	□□□□□ -2.37
PRKDC-210	ENST00000541488	TRAV13-1	A0A0B4J241	112 aa		0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488	PRORSD1P	A6NEY8	169 aa		0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488	IFITM5	A6NNB3	132 aa		0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488		M0QZK8	103 aa		0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488		M0R1W7	72 aa		0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488	CCL22	O00626	93 aa		0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488	EVI2A	P22794	236 aa		0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488	G0S2	P27469	103 aa		0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488	TPPP2	P59282	170 aa		0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488	SNRPD3	P62318	126 aa	Known RBP	0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488	ZNF720	Q7Z2F6	126 aa		0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488	SKA2	Q8WVK7	121 aa	Predicted RBP	0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488	WFDC6	Q9BQY6	131 aa		0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488	FAM103A1	Q9BTL3	118 aa	Known RBP	0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488	MED31	Q9Y3C7	131 aa		0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488		V9GYQ6	96 aa		0.23	□□□□□ -2.37
PRKDC-210	ENST00000541488		A0A096LPF7	62 aa		0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488		A0A1B0GV72	72 aa		0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488	DEFB130B	P0DP73	79 aa		0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488	DEFB130A	P0DP74	79 aa		0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488	PIP	P12273	146 aa	Predicted RBP	0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488	ETV6	P41212	452 aa		0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488		Q5VV11	94 aa		0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488	PPP1R2P3	Q6NXS1	205 aa		0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488	TOMM20L	Q6UXN7	152 aa		0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488	TSKU	Q8WUA8	353 aa		0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488	THEM6	Q8WUY1	208 aa		0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488	TTTY10	Q9BZA0	68 aa		0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488	TMEM14B	Q9NUH8	114 aa		0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488	SMPX	Q9UHP9	88 aa		0.22	□□□□□ -2.37
PRKDC-210	ENST00000541488		H3BMG7	143 aa		0.21	□□□□□ -2.38
PRKDC-210	ENST00000541488	S100A5	P33763	92 aa		0.21	□□□□□ -2.38
PRKDC-210	ENST00000541488	POLR2H	P52434	150 aa	Known RBP	0.21	□□□□□ -2.38
PRKDC-210	ENST00000541488	GLYATL3	Q5SZD4	288 aa		0.21	□□□□□ -2.38
PRKDC-210	ENST00000541488	OR8J3	Q8NGG0	315 aa		0.21	□□□□□ -2.38
PRKDC-210	ENST00000541488	OR9Q1	Q8NGQ5	310 aa		0.21	□□□□□ -2.38
PRKDC-210	ENST00000541488	UBE2D4	Q9Y2X8	147 aa		0.21	□□□□□ -2.38
PRKDC-210	ENST00000541488	C9orf92	A6NGG3	77 aa		0.2	□□□□□ -2.38
PRKDC-210	ENST00000541488	HIGD1C	A8MV81	97 aa		0.2	□□□□□ -2.38
PRKDC-210	ENST00000541488		H0YAA0	97 aa		0.2	□□□□□ -2.38
PRKDC-210	ENST00000541488	EDF1	O60869	148 aa	Known RBP	0.2	□□□□□ -2.38
PRKDC-210	ENST00000541488	CBLN1	P23435	193 aa		0.2	□□□□□ -2.38
PRKDC-210	ENST00000541488	MINOS1	Q5TGZ0	78 aa		0.2	□□□□□ -2.38
PRKDC-210	ENST00000541488	CSAG1	Q6PB30	78 aa		0.2	□□□□□ -2.38
PRKDC-210	ENST00000541488	HRCT1	Q6UXD1	115 aa		0.2	□□□□□ -2.38
PRKDC-210	ENST00000541488	RPS27L	Q71UM5	84 aa	Known RBP	0.2	□□□□□ -2.38
PRKDC-210	ENST00000541488	OR51A4	Q8NGJ6	313 aa		0.2	□□□□□ -2.38
PRKDC-210	ENST00000541488	GAFA1	Q96PS6	74 aa		0.2	□□□□□ -2.38
PRKDC-210	ENST00000541488	SMIM7	Q9BQ49	75 aa		0.2	□□□□□ -2.38
PRKDC-210	ENST00000541488	KAAG1	Q9UBP8	84 aa		0.2	□□□□□ -2.38
PRKDC-210	ENST00000541488	LOC107984156	A0A0G2JMH3	177 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	LOC107984640	A0A0U1RRK4	108 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	TMEM30CP	A0ZSE6	113 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	TMEM189	A5PLL7	270 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	NDUFA2	O43678	99 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	FABP1	P07148	127 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	PAEP	P09466	180 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	SLC25A4	P12235	298 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	RPL22	P35268	128 aa	Known RBP	0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	GTF2A1	P52655	376 aa	Predicted RBP	0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	RPL37	P61927	97 aa	Known RBP	0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	FXYD3	Q14802	87 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	LINC01556	Q5JQF7	62 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	OR2T2	Q6IF00	324 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	ARL17A	Q8IVW1	177 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	OR5A2	Q8NGI9	324 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	DMAC1	Q96GE9	116 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	CCDC115	Q96NT0	180 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	FKBP11	Q9NYL4	201 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	MRPL36	Q9P0J6	103 aa	Known RBP	0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	NDUFAF1	Q9Y375	327 aa		0.19	□□□□□ -2.38
PRKDC-210	ENST00000541488	PNMA8C	A0A1B0GUJ8	204 aa		0.18	□□□□□ -2.38
PRKDC-210	ENST00000541488	C20orf202	A1L168	122 aa		0.18	□□□□□ -2.38
PRKDC-210	ENST00000541488	UQCRQ	O14949	82 aa		0.18	□□□□□ -2.38

Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms