RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 IGLV5-45A0A087WSX0 123 aa11.4□□□□□ -0.58
PCDH1-203ENST00000394536 A0A087WVE0 104 aa11.4□□□□□ -0.58
PCDH1-203ENST00000394536 ATOX1O00244 68 aa11.4□□□□□ -0.59
PCDH1-203ENST00000394536 CHCHD10Q8WYQ3 142 aaPredicted RBP11.4□□□□□ -0.59
PCDH1-203ENST00000394536 RPL18AQ02543 176 aaKnown RBP11.39□□□□□ -0.59
PCDH1-203ENST00000394536 FAM104AQ969W3 186 aa11.39□□□□□ -0.59
PCDH1-203ENST00000394536 NHLRC4P0CG21 123 aaPredicted RBP11.39□□□□□ -0.59
PCDH1-203ENST00000394536 RPL28P46779 137 aaKnown RBP11.39□□□□□ -0.59
PCDH1-203ENST00000394536 C6orf99Q4VX62 202 aa11.39□□□□□ -0.59
PCDH1-203ENST00000394536 MXRA5Q9NR99 2828 aa11.39□□□□□ -0.59
PCDH1-203ENST00000394536 TRAV23DV6A0A075B6W5 121 aa11.39□□□□□ -0.59
PCDH1-203ENST00000394536 hADV29S1A0JD25 119 aa11.39□□□□□ -0.59
PCDH1-203ENST00000394536 ZNF561-AS1K7EIQ3 104 aa11.39□□□□□ -0.59
PCDH1-203ENST00000394536 FHL2Q14192 279 aa11.39□□□□□ -0.59
PCDH1-203ENST00000394536 SPAG11BQ08648 103 aa11.38□□□□□ -0.59
PCDH1-203ENST00000394536 REG3AQ06141 175 aa11.38□□□□□ -0.59
PCDH1-203ENST00000394536 HELZ2Q9BYK8 2649 aaKnown RBP11.38□□□□□ -0.59
PCDH1-203ENST00000394536 WFDC9Q8NEX5 89 aa11.38□□□□□ -0.59
PCDH1-203ENST00000394536 LRRC75A-AS1Q8N1F1 130 aa11.37□□□□□ -0.59
PCDH1-203ENST00000394536 CELSR2Q9HCU4 2923 aa11.37□□□□□ -0.59
PCDH1-203ENST00000394536 UQCRQO14949 82 aa11.37□□□□□ -0.59
PCDH1-203ENST00000394536 XAGE1AQ9HD64 81 aa11.37□□□□□ -0.59
PCDH1-203ENST00000394536 A0A087WZ39 114 aa11.36□□□□□ -0.59
PCDH1-203ENST00000394536 CXCL5P42830 114 aa11.36□□□□□ -0.59
PCDH1-203ENST00000394536 DSCR8Q96T75 97 aa11.36□□□□□ -0.59
PCDH1-203ENST00000394536 C3orf22Q8N5N4 141 aa11.36□□□□□ -0.59
PCDH1-203ENST00000394536 SMR3AQ99954 134 aa11.36□□□□□ -0.59
PCDH1-203ENST00000394536 KLK5Q9Y337 293 aaPredicted RBP11.36□□□□□ -0.59
PCDH1-203ENST00000394536 IMUPQ9GZP8 106 aa11.35□□□□□ -0.59
PCDH1-203ENST00000394536 IGHV3OR16-9A0A0B4J2B5 98 aa11.35□□□□□ -0.59
PCDH1-203ENST00000394536 IGLV1-51P01701 117 aa11.34□□□□□ -0.59
PCDH1-203ENST00000394536 JMJD7-PLA2G4BH0Y9G9 81 aa11.33□□□□□ -0.6
PCDH1-203ENST00000394536 TMEM256-PLSCR3K7ERE1 68 aa11.33□□□□□ -0.6
PCDH1-203ENST00000394536 APOC4P55056 127 aa11.33□□□□□ -0.6
PCDH1-203ENST00000394536 SETXQ7Z333 2677 aaKnown RBP11.33□□□□□ -0.6
PCDH1-203ENST00000394536 A8MTW9 85 aa11.32□□□□□ -0.6
PCDH1-203ENST00000394536 LINC00846Q9NV44 126 aa11.32□□□□□ -0.6
PCDH1-203ENST00000394536 UBR5O95071 2799 aaPredicted RBP11.32□□□□□ -0.6
PCDH1-203ENST00000394536 RBM3P98179 157 aaKnown RBP11.32□□□□□ -0.6
PCDH1-203ENST00000394536 ENHOQ6UWT2 76 aa11.32□□□□□ -0.6
PCDH1-203ENST00000394536 A0A096LNT2 108 aa11.31□□□□□ -0.6
PCDH1-203ENST00000394536 FAM110AQ9BQ89 295 aa11.31□□□□□ -0.6
PCDH1-203ENST00000394536 HIGD2BQ4VC39 106 aa11.31□□□□□ -0.6
PCDH1-203ENST00000394536 IGKV2-28A0A075B6P5 120 aa11.31□□□□□ -0.6
PCDH1-203ENST00000394536 IGKV2D-28P01615 120 aa11.31□□□□□ -0.6
PCDH1-203ENST00000394536 FSHBP01225 129 aa11.3□□□□□ -0.6
PCDH1-203ENST00000394536 SPART-AS1P0CW21 52 aa11.3□□□□□ -0.6
PCDH1-203ENST00000394536 GHRHP01286 108 aa11.3□□□□□ -0.6
PCDH1-203ENST00000394536 SMCR5Q8TEV8 140 aa11.3□□□□□ -0.6
PCDH1-203ENST00000394536 PPDPFQ9H3Y8 114 aa11.3□□□□□ -0.6
PCDH1-203ENST00000394536 USP17L23D6RBM5 183 aa11.29□□□□□ -0.6
PCDH1-203ENST00000394536 CAMK2N2Q96S95 79 aa11.29□□□□□ -0.6
PCDH1-203ENST00000394536 TRBV7-7A0A0K0K1E9 115 aa11.29□□□□□ -0.6
PCDH1-203ENST00000394536 UNQ6190/PRO20217Q6UXQ8 127 aa11.29□□□□□ -0.6
PCDH1-203ENST00000394536 DEFB105AQ8NG35 78 aa11.29□□□□□ -0.6
PCDH1-203ENST00000394536 CD164L2Q6UWJ8 174 aa11.28□□□□□ -0.6
PCDH1-203ENST00000394536 COX7CP15954 63 aa11.27□□□□□ -0.6
PCDH1-203ENST00000394536 Q8N3U1 123 aa11.27□□□□□ -0.6
PCDH1-203ENST00000394536 UNC79Q9P2D8 2635 aa11.27□□□□□ -0.61
PCDH1-203ENST00000394536 SCXQ7RTU7 201 aa11.27□□□□□ -0.61
PCDH1-203ENST00000394536 C9orf66Q5T8R8 295 aa11.27□□□□□ -0.61
PCDH1-203ENST00000394536 Q8IZM0 81 aa11.27□□□□□ -0.61
PCDH1-203ENST00000394536 C20orf197Q8N268 126 aa11.27□□□□□ -0.61
PCDH1-203ENST00000394536 C6orf223Q8N319 242 aa11.26□□□□□ -0.61
PCDH1-203ENST00000394536 Q6ZQY7 126 aa11.26□□□□□ -0.61
PCDH1-203ENST00000394536 ITPR2Q14571 2701 aa11.25□□□□□ -0.61
PCDH1-203ENST00000394536 IGKV2D-24A0A075B6R9 120 aa11.25□□□□□ -0.61
PCDH1-203ENST00000394536 IGHV4-28A0A0C4DH34 117 aa11.25□□□□□ -0.61
PCDH1-203ENST00000394536 BSNQ9UPA5 3926 aa11.24□□□□□ -0.61
PCDH1-203ENST00000394536 J3QKU1 62 aa11.24□□□□□ -0.61
PCDH1-203ENST00000394536 UPK3BQ9BT76 320 aa11.24□□□□□ -0.61
PCDH1-203ENST00000394536 GIG44P09565 113 aaPredicted RBP11.23□□□□□ -0.61
PCDH1-203ENST00000394536 Q8N814 137 aa11.23□□□□□ -0.61
PCDH1-203ENST00000394536 J3KT08 172 aa11.23□□□□□ -0.61
PCDH1-203ENST00000394536 CYSRT1A8MQ03 144 aa11.22□□□□□ -0.61
PCDH1-203ENST00000394536 LOC107984640A0A0U1RRK4 108 aa11.22□□□□□ -0.61
PCDH1-203ENST00000394536 C9orf129Q5T035 196 aaKnown RBP11.22□□□□□ -0.61
PCDH1-203ENST00000394536 HILS1P60008 231 aa11.22□□□□□ -0.61
PCDH1-203ENST00000394536 DIRC1Q969H9 104 aa11.21□□□□□ -0.61
PCDH1-203ENST00000394536 LYRM9A8MSI8 78 aa11.21□□□□□ -0.61
PCDH1-203ENST00000394536 DEFB121Q5J5C9 76 aa11.21□□□□□ -0.61
PCDH1-203ENST00000394536 SERP2Q8N6R1 65 aa11.21□□□□□ -0.61
PCDH1-203ENST00000394536 FAM19A1Q7Z5A9 133 aa11.21□□□□□ -0.62
PCDH1-203ENST00000394536 SMIM9A6NGZ8 99 aa11.2□□□□□ -0.62
PCDH1-203ENST00000394536 KIR2DL5BQ8NHK3 375 aa11.2□□□□□ -0.62
PCDH1-203ENST00000394536 NKAPP1Q8N9T2 125 aa11.2□□□□□ -0.62
PCDH1-203ENST00000394536 CCKP06307 115 aa11.19□□□□□ -0.62
PCDH1-203ENST00000394536 TEP1Q99973 2627 aaKnown RBP11.19□□□□□ -0.62
PCDH1-203ENST00000394536 INAFM1C9JVW0 142 aa11.19□□□□□ -0.62
PCDH1-203ENST00000394536 Q6JHZ5 121 aa11.19□□□□□ -0.62
PCDH1-203ENST00000394536 C1orf43Q9BWL3 253 aa11.18□□□□□ -0.62
PCDH1-203ENST00000394536 NIPBLQ6KC79 2804 aaeCLIP11.18□□□□□ -0.62
PCDH1-203ENST00000394536 PLAC8L1A1L4L8 177 aa11.17□□□□□ -0.62
PCDH1-203ENST00000394536 A0A1B0GUV1 79 aa11.17□□□□□ -0.62
PCDH1-203ENST00000394536 APCP25054 2843 aa11.16□□□□□ -0.62
PCDH1-203ENST00000394536 COX7BP24311 80 aa11.15□□□□□ -0.62
PCDH1-203ENST00000394536 C10orf25Q5T742 122 aa11.15□□□□□ -0.63
PCDH1-203ENST00000394536 MAST4O15021 2626 aa11.14□□□□□ -0.63
PCDH1-203ENST00000394536 TRBV10-3A0A0K0K1G6 114 aa11.14□□□□□ -0.63
PCDH1-203ENST00000394536 IL17DQ8TAD2 202 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms