RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 LENEPQ9Y5L5 61 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 HIVEP1P15822 2718 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 IGHV4-4A0A075B6R2 117 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 TRAV23DV6A0A075B6W5 121 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 M0QXV9 152 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 HERVK_113P63121 156 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 ZFAND2AQ8N6M9 145 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 UBL5Q9BZL1 73 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 A0A0B4J2C4 111 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 H3BT86 120 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 DAD1P61803 113 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 IGHV4-59P01825 116 aa4.04□□□□□ -1.76
LIMA1-203ENST00000547825 KRTAP21-3Q3LHN1 58 aa4.04□□□□□ -1.76
LIMA1-203ENST00000547825 SPANXA1Q9NS26 97 aa4.04□□□□□ -1.76
LIMA1-203ENST00000547825 ANKRD17O75179 2603 aaKnown RBP4.04□□□□□ -1.76
LIMA1-203ENST00000547825 IGLV10-54A0A075B6I4 117 aa4.04□□□□□ -1.76
LIMA1-203ENST00000547825 IGHV1-58A0A0C4DH39 117 aa4.04□□□□□ -1.76
LIMA1-203ENST00000547825 LOC107984640A0A0U1RRK4 108 aa4.04□□□□□ -1.76
LIMA1-203ENST00000547825 CLPSL1A2RUU4 121 aa4.04□□□□□ -1.76
LIMA1-203ENST00000547825 J3KT08 172 aa4.04□□□□□ -1.76
LIMA1-203ENST00000547825 LINC00694P0DN24 101 aa4.04□□□□□ -1.76
LIMA1-203ENST00000547825 MIR7-3HGQ8N6C7 128 aa4.04□□□□□ -1.76
LIMA1-203ENST00000547825 RBMY1FQ15415 496 aaKnown RBP4.04□□□□□ -1.76
LIMA1-203ENST00000547825 NOP10Q9NPE3 64 aaKnown RBP4.04□□□□□ -1.76
LIMA1-203ENST00000547825 ESM1Q9NQ30 184 aa4.04□□□□□ -1.76
LIMA1-203ENST00000547825 IGLV4-3A0A075B6K6 122 aa4.03□□□□□ -1.76
LIMA1-203ENST00000547825 RNASE3P12724 160 aaKnown RBP4.03□□□□□ -1.76
LIMA1-203ENST00000547825 UBE2D1P51668 147 aa4.03□□□□□ -1.76
LIMA1-203ENST00000547825 C20orf197Q8N268 126 aa4.03□□□□□ -1.76
LIMA1-203ENST00000547825 DNAJC30Q96LL9 226 aa4.03□□□□□ -1.76
LIMA1-203ENST00000547825 TMEM243Q9BU79 118 aa4.03□□□□□ -1.76
LIMA1-203ENST00000547825 FBN1P35555 2871 aaKnown RBP4.03□□□□□ -1.76
LIMA1-203ENST00000547825 TRAV13-2A0A0B4J235 113 aa4.03□□□□□ -1.76
LIMA1-203ENST00000547825 H7C423 109 aa4.03□□□□□ -1.76
LIMA1-203ENST00000547825 LINC00643Q86TS7 51 aa4.03□□□□□ -1.76
LIMA1-203ENST00000547825 VSIG2Q96IQ7 327 aa4.03□□□□□ -1.76
LIMA1-203ENST00000547825 ITPR3Q14573 2671 aa4.03□□□□□ -1.76
LIMA1-203ENST00000547825 TNFRSF13BO14836 293 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-203ENST00000547825 MIAQ16674 131 aa4.03□□□□□ -1.76
LIMA1-203ENST00000547825 C10orf99Q6UWK7 81 aa4.03□□□□□ -1.76
LIMA1-203ENST00000547825 C5orf56Q8N8D9 126 aa4.03□□□□□ -1.76
LIMA1-203ENST00000547825 TRAV25A0A0B4J276 109 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 IGHV4-61A0A0C4DH41 118 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 TMEM223A0PJW6 202 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 ATOX1O00244 68 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 POM121L12Q8N7R1 296 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 PPDPFQ9H3Y8 114 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 HECTD1Q9ULT8 2610 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 ACYP1P07311 99 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 TMEM61Q8N0U2 210 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 WFDC9Q8NEX5 89 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 NRGNQ92686 78 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 LINC00467Q9BRT7 94 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 B4DSR2 109 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 NCR3O14931 201 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 MSMBP08118 114 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 UBE2D3P61077 147 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 UBE2D2P62837 147 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 C10orf105Q8TEF2 133 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 PKIGQ9Y2B9 76 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 A0A087WVE0 104 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 M0QY20 66 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 NDUFA7O95182 113 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 DSCR8Q96T75 97 aa4.02□□□□□ -1.77
LIMA1-203ENST00000547825 FASNP49327 2511 aaKnown RBP4.01□□□□□ -1.77
LIMA1-203ENST00000547825 A0A0U1RQV1 116 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 UQCRQO14949 82 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 DEFB112Q30KQ8 113 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 ADAMTSL4-AS1Q5T5F5 129 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 COX7B2Q8TF08 81 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 TMEM263Q8WUH6 116 aaKnown RBP4.01□□□□□ -1.77
LIMA1-203ENST00000547825 PRO0461Q9UI25 63 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 IGLV2-18A0A075B6J9 118 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 TRBV30A0A0K0K1B3 111 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 POLR2KP53803 58 aaKnown RBP4.01□□□□□ -1.77
LIMA1-203ENST00000547825 C3orf22Q8N5N4 141 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 WFDC11Q8NEX6 87 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 CNFNQ9BYD5 112 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 ORMDL1Q9P0S3 153 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 TRRAPQ9Y4A5 3859 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 IGIPA6NJ69 53 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 LY6LH3BQJ8 138 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 SCXQ7RTU7 201 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 LINC00308Q8TCZ7 52 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 OVOL2Q9BRP0 275 aa4.01□□□□□ -1.77
LIMA1-203ENST00000547825 IGLV4-69A0A075B6H9 119 aa4□□□□□ -1.77
LIMA1-203ENST00000547825 IGHV4-28A0A0C4DH34 117 aa4□□□□□ -1.77
LIMA1-203ENST00000547825 COX7A2LO14548 114 aa4□□□□□ -1.77
LIMA1-203ENST00000547825 SS18Q15532 418 aa4□□□□□ -1.77
LIMA1-203ENST00000547825 NSD1Q96L73 2696 aaPredicted RBP4□□□□□ -1.77
LIMA1-203ENST00000547825 IGHV4OR15-8A0A075B7B6 117 aa4□□□□□ -1.77
LIMA1-203ENST00000547825 A0A087WW49 117 aa4□□□□□ -1.77
LIMA1-203ENST00000547825 A0A0J9YX75 114 aa4□□□□□ -1.77
LIMA1-203ENST00000547825 COX6B1P14854 86 aa4□□□□□ -1.77
LIMA1-203ENST00000547825 TRBV27A0A0K0K1C4 114 aa4□□□□□ -1.77
LIMA1-203ENST00000547825 ANGP03950 147 aaKnown RBP4□□□□□ -1.77
LIMA1-203ENST00000547825 HRCT1Q6UXD1 115 aa4□□□□□ -1.77
LIMA1-203ENST00000547825 LST1O00453 97 aa3.99□□□□□ -1.77
LIMA1-203ENST00000547825 CRYGDP07320 174 aa3.99□□□□□ -1.77
LIMA1-203ENST00000547825 DEFB113Q30KQ7 82 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms