RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 Q8N9L7 120 aa13.26□□□□□ -0.29
SFSWAP-203ENST00000535236 SMIM11BQ8TCY0 68 aa13.26□□□□□ -0.29
SFSWAP-203ENST00000535236 SERP1Q9Y6X1 66 aa13.26□□□□□ -0.29
SFSWAP-203ENST00000535236 Q8IZM0 81 aa13.25□□□□□ -0.29
SFSWAP-203ENST00000535236 FAM19A3Q7Z5A8 133 aa13.25□□□□□ -0.29
SFSWAP-203ENST00000535236 POLR2KP53803 58 aaKnown RBP13.24□□□□□ -0.29
SFSWAP-203ENST00000535236 NDUFC2-KCTD14E9PQ53 114 aa13.24□□□□□ -0.29
SFSWAP-203ENST00000535236 MRPS12O15235 138 aaKnown RBP13.24□□□□□ -0.29
SFSWAP-203ENST00000535236 CYSRT1A8MQ03 144 aa13.24□□□□□ -0.29
SFSWAP-203ENST00000535236 MUC7Q8TAX7 377 aa13.23□□□□□ -0.29
SFSWAP-203ENST00000535236 CACNA1AO00555 2505 aa13.23□□□□□ -0.29
SFSWAP-203ENST00000535236 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.23□□□□□ -0.29
SFSWAP-203ENST00000535236 CDC42SE2Q9NRR3 84 aa13.23□□□□□ -0.29
SFSWAP-203ENST00000535236 AVPP01185 164 aa13.22□□□□□ -0.29
SFSWAP-203ENST00000535236 FAM240AA0A1B0GVK7 77 aa13.22□□□□□ -0.29
SFSWAP-203ENST00000535236 C10orf25Q5T742 122 aa13.22□□□□□ -0.29
SFSWAP-203ENST00000535236 RPL28P46779 137 aaKnown RBP13.21□□□□□ -0.29
SFSWAP-203ENST00000535236 V9GYY9 64 aa13.21□□□□□ -0.29
SFSWAP-203ENST00000535236 CDSNQ15517 529 aa13.21□□□□□ -0.29
SFSWAP-203ENST00000535236 M0QXV9 152 aa13.21□□□□□ -0.29
SFSWAP-203ENST00000535236 RETNQ9HD89 108 aa13.21□□□□□ -0.29
SFSWAP-203ENST00000535236 MRPL55Q7Z7F7 128 aaKnown RBP13.21□□□□□ -0.3
SFSWAP-203ENST00000535236 LST1O00453 97 aa13.2□□□□□ -0.3
SFSWAP-203ENST00000535236 KIAA1549LQ6ZVL6 1849 aa13.2□□□□□ -0.3
SFSWAP-203ENST00000535236 ODF3L2Q3SX64 289 aa13.19□□□□□ -0.3
SFSWAP-203ENST00000535236 MED12LQ86YW9 2145 aa13.19□□□□□ -0.3
SFSWAP-203ENST00000535236 HIVEP3Q5T1R4 2406 aa13.19□□□□□ -0.3
SFSWAP-203ENST00000535236 NDUFC1O43677 76 aa13.18□□□□□ -0.3
SFSWAP-203ENST00000535236 SNURFQ9Y675 71 aa13.18□□□□□ -0.3
SFSWAP-203ENST00000535236 ATP5EP56381 51 aaPredicted RBP13.18□□□□□ -0.3
SFSWAP-203ENST00000535236 KRTAP10-9P60411 292 aa13.17□□□□□ -0.3
SFSWAP-203ENST00000535236 COL4A4P53420 1690 aaPredicted RBP13.17□□□□□ -0.3
SFSWAP-203ENST00000535236 IGLV5-52A0A0A0MRZ9 124 aa13.16□□□□□ -0.3
SFSWAP-203ENST00000535236 EGFEM1PQ0D2K5 195 aa13.16□□□□□ -0.3
SFSWAP-203ENST00000535236 CHCHD7Q9BUK0 85 aa13.16□□□□□ -0.3
SFSWAP-203ENST00000535236 UNQ6190/PRO20217Q6UXQ8 127 aa13.16□□□□□ -0.3
SFSWAP-203ENST00000535236 POM121L12Q8N7R1 296 aa13.16□□□□□ -0.3
SFSWAP-203ENST00000535236 PRR4Q16378 134 aa13.16□□□□□ -0.3
SFSWAP-203ENST00000535236 EDN2P20800 178 aa13.15□□□□□ -0.3
SFSWAP-203ENST00000535236 SERP2Q8N6R1 65 aa13.15□□□□□ -0.3
SFSWAP-203ENST00000535236 BRI3O95415 125 aa13.14□□□□□ -0.31
SFSWAP-203ENST00000535236 IGLV1-51P01701 117 aa13.14□□□□□ -0.31
SFSWAP-203ENST00000535236 GAS8-AS1O95177 125 aa13.14□□□□□ -0.31
SFSWAP-203ENST00000535236 KIAA1549Q9HCM3 1950 aa13.14□□□□□ -0.31
SFSWAP-203ENST00000535236 CIRBP-AS1Q8TBR5 109 aa13.14□□□□□ -0.31
SFSWAP-203ENST00000535236 FAM30AQ9NZY2 134 aa13.14□□□□□ -0.31
SFSWAP-203ENST00000535236 C6orf223Q8N319 242 aa13.14□□□□□ -0.31
SFSWAP-203ENST00000535236 REG3GQ6UW15 175 aa13.13□□□□□ -0.31
SFSWAP-203ENST00000535236 Q6ZVQ6 151 aa13.13□□□□□ -0.31
SFSWAP-203ENST00000535236 NUP210LQ5VU65 1888 aa13.13□□□□□ -0.31
SFSWAP-203ENST00000535236 LINC00242Q5T6M2 205 aa13.12□□□□□ -0.31
SFSWAP-203ENST00000535236 PCDH15Q96QU1 1955 aa13.12□□□□□ -0.31
SFSWAP-203ENST00000535236 A6NED7 52 aa13.11□□□□□ -0.31
SFSWAP-203ENST00000535236 NAV2Q8IVL1 2488 aa13.11□□□□□ -0.31
SFSWAP-203ENST00000535236 IMUPQ9GZP8 106 aa13.11□□□□□ -0.31
SFSWAP-203ENST00000535236 Q6ZTC4 211 aa13.1□□□□□ -0.31
SFSWAP-203ENST00000535236 NAV3Q8IVL0 2385 aa13.1□□□□□ -0.31
SFSWAP-203ENST00000535236 CNFNQ9BYD5 112 aa13.09□□□□□ -0.31
SFSWAP-203ENST00000535236 ESRGQ1W209 222 aa13.09□□□□□ -0.31
SFSWAP-203ENST00000535236 C9orf116Q5BN46 136 aaPredicted RBP13.09□□□□□ -0.31
SFSWAP-203ENST00000535236 C2orf91Q6ZV80 131 aa13.09□□□□□ -0.31
SFSWAP-203ENST00000535236 IGIPA6NJ69 53 aa13.09□□□□□ -0.31
SFSWAP-203ENST00000535236 NTM-AS1Q6ZSK4 140 aa13.09□□□□□ -0.31
SFSWAP-203ENST00000535236 TRBV10-3A0A0K0K1G6 114 aa13.08□□□□□ -0.31
SFSWAP-203ENST00000535236 A0A0U1RQV1 116 aa13.08□□□□□ -0.32
SFSWAP-203ENST00000535236 C1orf137Q5JT78 98 aa13.07□□□□□ -0.32
SFSWAP-203ENST00000535236 C16orf95Q9H693 158 aa13.07□□□□□ -0.32
SFSWAP-203ENST00000535236 YPEL4Q96NS1 127 aa13.07□□□□□ -0.32
SFSWAP-203ENST00000535236 FSHBP01225 129 aa13.07□□□□□ -0.32
SFSWAP-203ENST00000535236 SMIM1B2RUZ4 78 aa13.06□□□□□ -0.32
SFSWAP-203ENST00000535236 FHL2Q14192 279 aa13.06□□□□□ -0.32
SFSWAP-203ENST00000535236 CRIP2P52943 208 aaPredicted RBP13.05□□□□□ -0.32
SFSWAP-203ENST00000535236 MYO18BQ8IUG5 2567 aa13.05□□□□□ -0.32
SFSWAP-203ENST00000535236 CELA1Q9UNI1 258 aa13.05□□□□□ -0.32
SFSWAP-203ENST00000535236 TANC2Q9HCD6 1990 aa13.05□□□□□ -0.32
SFSWAP-203ENST00000535236 IGLV4-60A0A075B6I1 120 aa13.05□□□□□ -0.32
SFSWAP-203ENST00000535236 LINC01556Q5JQF7 62 aa13.05□□□□□ -0.32
SFSWAP-203ENST00000535236 Q6JHZ5 121 aa13.05□□□□□ -0.32
SFSWAP-203ENST00000535236 C1orf134Q5TEV5 83 aa13.04□□□□□ -0.32
SFSWAP-203ENST00000535236 Q8N814 137 aa13.03□□□□□ -0.32
SFSWAP-203ENST00000535236 IGHV6-1A0A0B4J1U7 121 aa13.03□□□□□ -0.32
SFSWAP-203ENST00000535236 COX6A2Q02221 97 aa13.02□□□□□ -0.32
SFSWAP-203ENST00000535236 CCDC168Q8NDH2 2452 aa13.02□□□□□ -0.33
SFSWAP-203ENST00000535236 PRRC2AP48634 2157 aaKnown RBP13.01□□□□□ -0.33
SFSWAP-203ENST00000535236 COX7CP15954 63 aa13.01□□□□□ -0.33
SFSWAP-203ENST00000535236 LINC00694P0DN24 101 aa13□□□□□ -0.33
SFSWAP-203ENST00000535236 PCNX3Q9H6A9 2034 aa13□□□□□ -0.33
SFSWAP-203ENST00000535236 PLXNB1O43157 2135 aa13□□□□□ -0.33
SFSWAP-203ENST00000535236 PRR3P79522 188 aaKnown RBP12.99□□□□□ -0.33
SFSWAP-203ENST00000535236 Q9BRP9 147 aa12.99□□□□□ -0.33
SFSWAP-203ENST00000535236 F8WDY8 70 aa12.99□□□□□ -0.33
SFSWAP-203ENST00000535236 LINC00208Q96KT6 92 aa12.98□□□□□ -0.33
SFSWAP-203ENST00000535236 CEP192Q8TEP8 1941 aa12.98□□□□□ -0.33
SFSWAP-203ENST00000535236 RETNLBQ9BQ08 111 aa12.97□□□□□ -0.33
SFSWAP-203ENST00000535236 ABCA2Q9BZC7 2435 aa12.96□□□□□ -0.33
SFSWAP-203ENST00000535236 X6R8D5 127 aa12.96□□□□□ -0.33
SFSWAP-203ENST00000535236 LYPD5Q6UWN5 251 aa12.95□□□□□ -0.34
SFSWAP-203ENST00000535236 ZNF580Q9UK33 172 aa12.95□□□□□ -0.34
SFSWAP-203ENST00000535236 CSDC2Q9Y534 153 aaKnown RBP12.95□□□□□ -0.34
SFSWAP-203ENST00000535236 A0A087WYN8 130 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms