RNA–Protein interactions for RNA: ENST00000520948.5

VEGFA-222, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,199 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-222	ENST00000520948	ZC2HC1B	Q5TFG8	222 aa		11.84	□□□□□ -0.51
VEGFA-222	ENST00000520948	TEX43	Q6ZNM6	134 aa		11.84	□□□□□ -0.51
VEGFA-222	ENST00000520948	VCX2	Q9H322	139 aa		11.84	□□□□□ -0.51
VEGFA-222	ENST00000520948	IFITM10	A6NMD0	228 aa		11.83	□□□□□ -0.52
VEGFA-222	ENST00000520948	LINC00310	P59036	64 aa		11.83	□□□□□ -0.52
VEGFA-222	ENST00000520948	PMCHL1	Q16048	86 aa		11.83	□□□□□ -0.52
VEGFA-222	ENST00000520948	C14orf177	Q52M58	125 aa		11.83	□□□□□ -0.52
VEGFA-222	ENST00000520948	FAM19A3	Q7Z5A8	133 aa		11.83	□□□□□ -0.52
VEGFA-222	ENST00000520948	C15orf56	Q8N910	161 aa		11.83	□□□□□ -0.52
VEGFA-222	ENST00000520948	HBD	P02042	147 aa		11.82	□□□□□ -0.52
VEGFA-222	ENST00000520948	UBE2D1	P51668	147 aa		11.82	□□□□□ -0.52
VEGFA-222	ENST00000520948	PAPPA-AS1	Q5QFB9	102 aa		11.82	□□□□□ -0.52
VEGFA-222	ENST00000520948	LINC00242	Q5T6M2	205 aa		11.82	□□□□□ -0.52
VEGFA-222	ENST00000520948		Q6ZN92	141 aa		11.82	□□□□□ -0.52
VEGFA-222	ENST00000520948	BAGE3	Q86Y29	109 aa		11.82	□□□□□ -0.52
VEGFA-222	ENST00000520948	IGHV3OR16-9	A0A0B4J2B5	98 aa		11.81	□□□□□ -0.52
VEGFA-222	ENST00000520948	VPS13B	Q7Z7G8	4022 aa		11.81	□□□□□ -0.52
VEGFA-222	ENST00000520948	MYCBP2	O75592	4640 aa		11.8	□□□□□ -0.52
VEGFA-222	ENST00000520948	COX6A2	Q02221	97 aa		11.8	□□□□□ -0.52
VEGFA-222	ENST00000520948	CFAP161	Q6P656	301 aa		11.8	□□□□□ -0.52
VEGFA-222	ENST00000520948	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	NUPR1	O60356	82 aa		11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	HIST1H2BK	O60814	126 aa		11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	HIST1H2BJ	P06899	126 aa		11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	HIST1H2BO	P23527	126 aa		11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	HIST1H2BB	P33778	126 aa		11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	HIST1H2BD	P58876	126 aa		11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	HIST1H2BC	P62807	126 aa		11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	HIST2H2BE	Q16778	126 aa		11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	HIST1H2BH	Q93079	126 aa		11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	HIST1H2BN	Q99877	126 aa		11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	HIST1H2BM	Q99879	126 aa		11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	C2orf88	Q9BSF0	95 aa		11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	FLG2	Q5D862	2391 aa	Predicted RBP	11.79	□□□□□ -0.52
VEGFA-222	ENST00000520948	IGLV5-52	A0A0A0MRZ9	124 aa		11.78	□□□□□ -0.52
VEGFA-222	ENST00000520948	COX7A2L	O14548	114 aa		11.78	□□□□□ -0.52
VEGFA-222	ENST00000520948	SERF1A	O75920	110 aa		11.78	□□□□□ -0.52
VEGFA-222	ENST00000520948	CST9L	Q9H4G1	147 aa		11.78	□□□□□ -0.52
VEGFA-222	ENST00000520948	GVQW2	A0A096LPI5	108 aa	Predicted RBP	11.77	□□□□□ -0.53
VEGFA-222	ENST00000520948	IGHV1-58	A0A0C4DH39	117 aa		11.77	□□□□□ -0.53
VEGFA-222	ENST00000520948	FAM229A	H3BQW9	127 aa		11.77	□□□□□ -0.53
VEGFA-222	ENST00000520948	SLPI	P03973	132 aa		11.77	□□□□□ -0.53
VEGFA-222	ENST00000520948	C5orf38	Q86SI9	138 aa		11.77	□□□□□ -0.53
VEGFA-222	ENST00000520948	HSBP1	O75506	76 aa		11.76	□□□□□ -0.53
VEGFA-222	ENST00000520948	PMVK	Q15126	192 aa		11.76	□□□□□ -0.53
VEGFA-222	ENST00000520948	FAM19A2	Q8N3H0	131 aa		11.76	□□□□□ -0.53
VEGFA-222	ENST00000520948		A0A087WZ39	114 aa		11.75	□□□□□ -0.53
VEGFA-222	ENST00000520948	hDV102S1	A0JD36	115 aa		11.75	□□□□□ -0.53
VEGFA-222	ENST00000520948	ATP5L	O75964	103 aa		11.75	□□□□□ -0.53
VEGFA-222	ENST00000520948	CNBP	P62633	177 aa	Known RBP	11.75	□□□□□ -0.53
VEGFA-222	ENST00000520948		A0A0J9YXV3	536 aa		11.74	□□□□□ -0.53
VEGFA-222	ENST00000520948	SRRM2	Q9UQ35	2752 aa	Known RBP	11.74	□□□□□ -0.53
VEGFA-222	ENST00000520948	MAL	P21145	153 aa		11.73	□□□□□ -0.53
VEGFA-222	ENST00000520948	SEC11A	P67812	179 aa		11.73	□□□□□ -0.53
VEGFA-222	ENST00000520948	HIGD2B	Q4VC39	106 aa		11.73	□□□□□ -0.53
VEGFA-222	ENST00000520948	LINC01561	Q8N1V8	128 aa		11.73	□□□□□ -0.53
VEGFA-222	ENST00000520948	C9orf163	Q8N9P6	203 aa		11.73	□□□□□ -0.53
VEGFA-222	ENST00000520948	IGHV3-64	A0A075B6Q5	118 aa		11.72	□□□□□ -0.53
VEGFA-222	ENST00000520948	TINCR	A0A1B0GVN0	87 aa		11.72	□□□□□ -0.53
VEGFA-222	ENST00000520948	HERVK_113	P63121	156 aa		11.72	□□□□□ -0.53
VEGFA-222	ENST00000520948	FAM30A	Q9NZY2	134 aa		11.72	□□□□□ -0.53
VEGFA-222	ENST00000520948	APOM	O95445	188 aa		11.71	□□□□□ -0.53
VEGFA-222	ENST00000520948	IGLV5-45	A0A087WSX0	123 aa		11.7	□□□□□ -0.54
VEGFA-222	ENST00000520948	LINC01620	Q4KN68	170 aa		11.7	□□□□□ -0.54
VEGFA-222	ENST00000520948	COA6	Q5JTJ3	125 aa	Known RBP	11.7	□□□□□ -0.54
VEGFA-222	ENST00000520948	OR10D4P	Q8NGN7	298 aa		11.7	□□□□□ -0.54
VEGFA-222	ENST00000520948	IFI27L1	Q96BM0	104 aa		11.7	□□□□□ -0.54
VEGFA-222	ENST00000520948	CDKN2A-AS1	Q9UH64	79 aa		11.7	□□□□□ -0.54
VEGFA-222	ENST00000520948		J3QL48	77 aa		11.69	□□□□□ -0.54
VEGFA-222	ENST00000520948	LINC00526	Q96FQ7	95 aa		11.69	□□□□□ -0.54
VEGFA-222	ENST00000520948	IGLV4-69	A0A075B6H9	119 aa		11.68	□□□□□ -0.54
VEGFA-222	ENST00000520948	ZNF561-AS1	K7EIQ3	104 aa		11.68	□□□□□ -0.54
VEGFA-222	ENST00000520948	LEPROTL1	O95214	131 aa		11.68	□□□□□ -0.54
VEGFA-222	ENST00000520948	IGLC3	P0DOY3	106 aa		11.68	□□□□□ -0.54
VEGFA-222	ENST00000520948	KIAA0087	Q14695	138 aa		11.68	□□□□□ -0.54
VEGFA-222	ENST00000520948	GEMIN7	Q9H840	131 aa	Known RBP	11.68	□□□□□ -0.54
VEGFA-222	ENST00000520948	TRAV12-1	A0A0B4J245	112 aa		11.67	□□□□□ -0.54
VEGFA-222	ENST00000520948	NDUFA6	P56556	154 aa		11.67	□□□□□ -0.54
VEGFA-222	ENST00000520948	ORAOV1	Q8WV07	137 aa		11.67	□□□□□ -0.54
VEGFA-222	ENST00000520948	C2orf48	Q96LS8	159 aa		11.67	□□□□□ -0.54
VEGFA-222	ENST00000520948	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	11.66	□□□□□ -0.54
VEGFA-222	ENST00000520948	SDIM1	Q6ZPB5	146 aa		11.66	□□□□□ -0.54
VEGFA-222	ENST00000520948	DNAH8	Q96JB1	4490 aa		11.66	□□□□□ -0.54
VEGFA-222	ENST00000520948	SPAG11B	Q08648	103 aa		11.65	□□□□□ -0.54
VEGFA-222	ENST00000520948		Q6ZSA8	131 aa		11.65	□□□□□ -0.54
VEGFA-222	ENST00000520948		F8WDY8	70 aa		11.64	□□□□□ -0.55
VEGFA-222	ENST00000520948	SYCN	Q0VAF6	134 aa		11.64	□□□□□ -0.55
VEGFA-222	ENST00000520948	LINC00469	Q8N7U9	141 aa		11.64	□□□□□ -0.55
VEGFA-222	ENST00000520948	FABP4	P15090	132 aa		11.63	□□□□□ -0.55
VEGFA-222	ENST00000520948	HSPB8	Q9UJY1	196 aa		11.63	□□□□□ -0.55
VEGFA-222	ENST00000520948	CHTOP	Q9Y3Y2	248 aa	Known RBP	11.63	□□□□□ -0.55
VEGFA-222	ENST00000520948	SMIM1	B2RUZ4	78 aa		11.62	□□□□□ -0.55
VEGFA-222	ENST00000520948	ZNF22	P17026	224 aa	Predicted RBP	11.62	□□□□□ -0.55
VEGFA-222	ENST00000520948		Q6ZRU5	148 aa		11.62	□□□□□ -0.55
VEGFA-222	ENST00000520948	LINC00528	Q8N1L1	170 aa		11.62	□□□□□ -0.55
VEGFA-222	ENST00000520948	CARD19	Q96LW7	228 aa		11.62	□□□□□ -0.55
VEGFA-222	ENST00000520948	PACRG	Q96M98	296 aa	Predicted RBP	11.62	□□□□□ -0.55
VEGFA-222	ENST00000520948	CHAC1	Q9BUX1	264 aa		11.62	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms