RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 LINC00575Q6W349 94 aa4.4□□□□□ -1.7
SCN1A-203ENST00000409050 PMAIP1Q13794 54 aa4.4□□□□□ -1.71
SCN1A-203ENST00000409050 LINC00310P59036 64 aa4.4□□□□□ -1.71
SCN1A-203ENST00000409050 TMEM254Q8TBM7 123 aa4.4□□□□□ -1.71
SCN1A-203ENST00000409050 PRO0628Q9UI54 55 aa4.4□□□□□ -1.71
SCN1A-203ENST00000409050 PRB2P02812 416 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-203ENST00000409050 Q6ZVQ6 151 aa4.39□□□□□ -1.71
SCN1A-203ENST00000409050 LINC00208Q96KT6 92 aa4.39□□□□□ -1.71
SCN1A-203ENST00000409050 MED13Q9UHV7 2174 aa4.39□□□□□ -1.71
SCN1A-203ENST00000409050 A0A0U1RQV1 116 aa4.39□□□□□ -1.71
SCN1A-203ENST00000409050 Q8N3U1 123 aa4.39□□□□□ -1.71
SCN1A-203ENST00000409050 URB1-AS1Q96HZ7 61 aa4.39□□□□□ -1.71
SCN1A-203ENST00000409050 ESRGQ1W209 222 aa4.39□□□□□ -1.71
SCN1A-203ENST00000409050 ALPK3Q96L96 1907 aa4.39□□□□□ -1.71
SCN1A-203ENST00000409050 CACNA1HO95180 2353 aa4.39□□□□□ -1.71
SCN1A-203ENST00000409050 IGLV5-39A0A0G2JS06 123 aa4.39□□□□□ -1.71
SCN1A-203ENST00000409050 H3BNG1 76 aa4.39□□□□□ -1.71
SCN1A-203ENST00000409050 COL6A6A6NMZ7 2263 aa4.38□□□□□ -1.71
SCN1A-203ENST00000409050 NRGNQ92686 78 aa4.38□□□□□ -1.71
SCN1A-203ENST00000409050 DIDO1Q9BTC0 2240 aaKnown RBP4.38□□□□□ -1.71
SCN1A-203ENST00000409050 IGKV2-28A0A075B6P5 120 aa4.38□□□□□ -1.71
SCN1A-203ENST00000409050 IGKV2D-28P01615 120 aa4.38□□□□□ -1.71
SCN1A-203ENST00000409050 PLA2G5P39877 138 aa4.38□□□□□ -1.71
SCN1A-203ENST00000409050 WFDC11Q8NEX6 87 aa4.38□□□□□ -1.71
SCN1A-203ENST00000409050 ODF3L2Q3SX64 289 aa4.37□□□□□ -1.71
SCN1A-203ENST00000409050 ZNF843Q8N446 348 aa4.37□□□□□ -1.71
SCN1A-203ENST00000409050 NCOR1O75376 2440 aa4.37□□□□□ -1.71
SCN1A-203ENST00000409050 PROK1P58294 105 aa4.37□□□□□ -1.71
SCN1A-203ENST00000409050 FHL2Q14192 279 aa4.37□□□□□ -1.71
SCN1A-203ENST00000409050 H0Y9P7 68 aa4.37□□□□□ -1.71
SCN1A-203ENST00000409050 ROS1P08922 2347 aa4.37□□□□□ -1.71
SCN1A-203ENST00000409050 ERC2-IT1O76042 136 aa4.37□□□□□ -1.71
SCN1A-203ENST00000409050 C2orf16Q68DN1 1984 aa4.36□□□□□ -1.71
SCN1A-203ENST00000409050 NHLRC4P0CG21 123 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-203ENST00000409050 KIF26AQ9ULI4 1882 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-203ENST00000409050 IGLV5-45A0A087WSX0 123 aa4.36□□□□□ -1.71
SCN1A-203ENST00000409050 DOCK7Q96N67 2140 aa4.36□□□□□ -1.71
SCN1A-203ENST00000409050 KIAA1549LQ6ZVL6 1849 aa4.36□□□□□ -1.71
SCN1A-203ENST00000409050 C19orf84I3L1E1 186 aa4.36□□□□□ -1.71
SCN1A-203ENST00000409050 NOTCH4Q99466 2003 aa4.36□□□□□ -1.71
SCN1A-203ENST00000409050 LOC110117498A0A087WWA1 95 aa4.36□□□□□ -1.71
SCN1A-203ENST00000409050 LINC01547P58512 204 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-203ENST00000409050 UNQ6190/PRO20217Q6UXQ8 127 aa4.36□□□□□ -1.71
SCN1A-203ENST00000409050 Q9BRP9 147 aa4.36□□□□□ -1.71
SCN1A-203ENST00000409050 HRCT1Q6UXD1 115 aa4.35□□□□□ -1.71
SCN1A-203ENST00000409050 A0A096LNI7 61 aa4.35□□□□□ -1.71
SCN1A-203ENST00000409050 SBSPONQ8IVN8 264 aa4.35□□□□□ -1.71
SCN1A-203ENST00000409050 PRO3102Q9H379 93 aa4.35□□□□□ -1.71
SCN1A-203ENST00000409050 A0A096LNJ9 63 aa4.35□□□□□ -1.71
SCN1A-203ENST00000409050 A8MZ25 164 aa4.34□□□□□ -1.71
SCN1A-203ENST00000409050 SPINK6Q6UWN8 80 aa4.34□□□□□ -1.71
SCN1A-203ENST00000409050 A0A087WYN8 130 aa4.34□□□□□ -1.71
SCN1A-203ENST00000409050 IGHV4-30-4P0DP06 118 aa4.34□□□□□ -1.71
SCN1A-203ENST00000409050 ACYP2P14621 99 aa4.34□□□□□ -1.71
SCN1A-203ENST00000409050 MUC22E2RYF6 1773 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-203ENST00000409050 C11orf72Q8NBR9 251 aa4.34□□□□□ -1.71
SCN1A-203ENST00000409050 CADP27708 2225 aa4.34□□□□□ -1.71
SCN1A-203ENST00000409050 LY6G6DO95868 133 aa4.34□□□□□ -1.72
SCN1A-203ENST00000409050 TSPEAR-AS2P59090 65 aa4.34□□□□□ -1.72
SCN1A-203ENST00000409050 C22orf34Q6ZV56 151 aa4.34□□□□□ -1.72
SCN1A-203ENST00000409050 KIF25-AS1Q9Y6Z4 181 aa4.34□□□□□ -1.72
SCN1A-203ENST00000409050 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.33□□□□□ -1.728e-7■■■■□ 21.2
SCN1A-203ENST00000409050 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-203ENST00000409050 LOC100131303A0A0U1RQF7 123 aa4.33□□□□□ -1.72
SCN1A-203ENST00000409050 KLK9Q2XQG4 91 aa4.33□□□□□ -1.72
SCN1A-203ENST00000409050 NOTCH3Q9UM47 2321 aa4.33□□□□□ -1.72
SCN1A-203ENST00000409050 IGLV9-49A0A0B4J1Y8 123 aa4.33□□□□□ -1.72
SCN1A-203ENST00000409050 FSHBP01225 129 aa4.33□□□□□ -1.72
SCN1A-203ENST00000409050 INAFM1C9JVW0 142 aa4.33□□□□□ -1.72
SCN1A-203ENST00000409050 PCNX2A6NKB5 2137 aa4.32□□□□□ -1.72
SCN1A-203ENST00000409050 LINC01556Q5JQF7 62 aa4.32□□□□□ -1.72
SCN1A-203ENST00000409050 ADAMTSL4-AS1Q5T5F5 129 aa4.32□□□□□ -1.72
SCN1A-203ENST00000409050 ZGRF1Q86YA3 2104 aa4.32□□□□□ -1.72
SCN1A-203ENST00000409050 CDIP1Q9H305 208 aa4.32□□□□□ -1.72
SCN1A-203ENST00000409050 RETNQ9HD89 108 aa4.32□□□□□ -1.72
SCN1A-203ENST00000409050 LINC00846Q9NV44 126 aa4.32□□□□□ -1.72
SCN1A-203ENST00000409050 NCOA6Q14686 2063 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-203ENST00000409050 FAM19A4Q96LR4 140 aa4.32□□□□□ -1.72
SCN1A-203ENST00000409050 CYP4F30PQ9H0H9 118 aa4.32□□□□□ -1.72
SCN1A-203ENST00000409050 COX6A2Q02221 97 aa4.31□□□□□ -1.72
SCN1A-203ENST00000409050 C6orf223Q8N319 242 aa4.31□□□□□ -1.72
SCN1A-203ENST00000409050 C1orf64Q8NEQ6 169 aa4.31□□□□□ -1.72
SCN1A-203ENST00000409050 COL5A1P20908 1838 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-203ENST00000409050 Q6ZTC4 211 aa4.31□□□□□ -1.72
SCN1A-203ENST00000409050 A0A087WSZ3 146 aa4.31□□□□□ -1.72
SCN1A-203ENST00000409050 IGLV4-60A0A075B6I1 120 aa4.31□□□□□ -1.72
SCN1A-203ENST00000409050 A0A0J9YWU9 116 aa4.31□□□□□ -1.72
SCN1A-203ENST00000409050 LYPD5Q6UWN5 251 aa4.31□□□□□ -1.72
SCN1A-203ENST00000409050 IGHV6-1A0A0B4J1U7 121 aa4.31□□□□□ -1.72
SCN1A-203ENST00000409050 LRCOL1A6NCL2 159 aa4.31□□□□□ -1.72
SCN1A-203ENST00000409050 GAS8-AS1O95177 125 aa4.31□□□□□ -1.72
SCN1A-203ENST00000409050 NBASA2RRP1 2371 aa4.31□□□□□ -1.72
SCN1A-203ENST00000409050 GVQW2A0A096LPI5 108 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-203ENST00000409050 C8orf87E5RJ46 101 aa4.3□□□□□ -1.72
SCN1A-203ENST00000409050 VPREB1P12018 145 aa4.3□□□□□ -1.72
SCN1A-203ENST00000409050 FHL3Q13643 280 aa4.3□□□□□ -1.72
SCN1A-203ENST00000409050 IGLV5-52A0A0A0MRZ9 124 aa4.3□□□□□ -1.72
SCN1A-203ENST00000409050 IGHV3OR16-9A0A0B4J2B5 98 aa4.3□□□□□ -1.72
SCN1A-203ENST00000409050 ATG2AQ2TAZ0 1938 aa4.3□□□□□ -1.72
SCN1A-203ENST00000409050 ACACBO00763 2458 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 152.9 ms